mRNA_S-ischiensis_contig11.2021.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2021.1
Unique NamemRNA_S-ischiensis_contig11.2021.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig11.2021.1 vs. uniprot
Match: D8LHU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHU3_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 2.510e-32
Identity = 55/119 (46.22%), Postives = 81/119 (68.07%), Query Frame = 2 
Query:   26 WRADGTTVVGNRIRVYWDGDDKWFIGRIIDF-DLERGEHLISYDEDGDEEWTDLSQALGIISCKIVWAKMRSFPWWPAQIYEPIGKSTVKKGVHEHRPGHAYCVFFGTDECAWVAYGED 379
            W  D   +VG+R+RVYWDGD++W+ GRI+ F   +R  +L+ YDEDG  EW +L +   I++ ++VW KMRS PWWPAQ+Y+P G   ++ G+ E +  HA+ VFF TDE  +V  G++
Sbjct:  264 WAEDSYEMVGSRVRVYWDGDNEWYSGRIVRFKSTQREPYLVRYDEDGSVEWLNLPEQPAIVARQVVWVKMRSHPWWPAQVYQPTGPKAMQDGMIEVKERHAFVVFFKTDESGFVPVGQN 382
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BLAST of mRNA_S-ischiensis_contig11.2021.1 vs. uniprot
Match: A0A7S3YHW1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YHW1_HETAK)

HSP 1 Score: 64.7 bits (156), Expect = 8.460e-10
Identity = 30/84 (35.71%), Postives = 47/84 (55.95%), Query Frame = 2 
Query:   26 WRADGTTVVGNRIRVYWDGDDK---WFIGRIIDFDLERGEHLISYDEDGDEEWTDLSQALGIISCKIVWAKMRSFPWWPAQIYE 268
            W A G   VG R R + + + K   W+  RI+D+D     HL+ + +   E W  L +   ++   +VWAK++ FPWWPAQ++E
Sbjct:  130 WEAYGWKHVGARCRAFKEKEGKKGKWYSARIVDYDPVGRRHLLVFRKSQREWWCRLWEEPVLVGGALVWAKLKGFPWWPAQVFE 213
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BLAST of mRNA_S-ischiensis_contig11.2021.1 vs. uniprot
Match: A0A5J5C717_9ASTE (Uncharacterized protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5C717_9ASTE)

HSP 1 Score: 62.0 bits (149), Expect = 2.280e-8
Identity = 28/50 (56.00%), Postives = 35/50 (70.00%), Query Frame = 2 
Query:   35 DGTTVVGNRIRVYWDGDDKWFIGRIIDFDLERGEHLISYDEDGDEEWTDL 184
            D T +VG R++VYW G  KWF+G I  FD+E+G H I YD DGD+E  DL
Sbjct:   98 DNTRIVGTRVKVYWSGSRKWFLGSIKSFDMEKGLHKILYD-DGDKEELDL 146
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BLAST of mRNA_S-ischiensis_contig11.2021.1 vs. uniprot
Match: A0A5J5AFU8_9ASTE (Uncharacterized protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5AFU8_9ASTE)

HSP 1 Score: 58.9 bits (141), Expect = 2.910e-7
Identity = 27/52 (51.92%), Postives = 35/52 (67.31%), Query Frame = 2 
Query:   35 DGTTVVGNRIRVYWDGDDKWFIGRIIDFDLERGEHLISYDEDGDEEWTDLSQ 190
            D   +VG R++VYW G  +WF+G I  FD+E+G H I YD DGD+E  DL Q
Sbjct:   75 DTQRIVGMRVKVYWSGSRRWFVGSIKSFDVEKGLHKIHYD-DGDKEELDLRQ 125
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BLAST of mRNA_S-ischiensis_contig11.2021.1 vs. uniprot
Match: A0A5B7B686_DAVIN (Putative midasin n=2 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7B686_DAVIN)

HSP 1 Score: 58.5 bits (140), Expect = 3.750e-7
Identity = 26/50 (52.00%), Postives = 34/50 (68.00%), Query Frame = 2 
Query:   35 DGTTVVGNRIRVYWDGDDKWFIGRIIDFDLERGEHLISYDEDGDEEWTDL 184
            D   +VG R++VYW G  +WF+G I  FD+E+G H I YD DGD+E  DL
Sbjct:  122 DNKRIVGMRVKVYWSGSRRWFVGSIKSFDIEKGLHKIHYD-DGDKEELDL 170
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BLAST of mRNA_S-ischiensis_contig11.2021.1 vs. uniprot
Match: UPI000C1D1529 (uncharacterized protein LOC111392351 n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D1529)

HSP 1 Score: 58.2 bits (139), Expect = 5.710e-7
Identity = 41/144 (28.47%), Postives = 58/144 (40.28%), Query Frame = 2 
Query:   17 GQAWRADGTTVVGNRIRVYWDGDDKWFIGRIIDFDL---ERGEHLISYDEDG------------DEEWTDLSQALGIISCKIVWAKMRSFPWWPAQIYEPIGKST-VKKGVHEHRPGHAYCVFFGTDECAWVAYGEDPPALRLF 400
            G+   A+   V+G        GD +   G + D D    + GE ++    DG            + E   + Q  G     IVW K+RS PWWP QI+ P+  S   +K  H  + G     FFG   CAW    +  P +  F
Sbjct:  139 GEGSSAENVVVLG--------GDYEQLNGSVTDMDKNAGQNGEEVMKVGVDGNTEIMVADIEKIENEERFVGQEHGFHVGDIVWGKIRSHPWWPGQIHNPLDASEFAEKHAHSGQAGRLLVGFFGDHSCAWCLPSQLIPFVENF 274
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BLAST of mRNA_S-ischiensis_contig11.2021.1 vs. uniprot
Match: A0A061GT97_THECC (Uncharacterized protein isoform 1 n=3 Tax=Byttnerioideae TaxID=214909 RepID=A0A061GT97_THECC)

HSP 1 Score: 57.8 bits (138), Expect = 7.410e-7
Identity = 28/51 (54.90%), Postives = 34/51 (66.67%), Query Frame = 2 
Query:   32 ADGTTVVGNRIRVYWDGDDKWFIGRIIDFDLERGEHLISYDEDGDEEWTDL 184
            +D   VVG R++VYW G  +WFIGRI+ FD +   H I Y EDGDEE  DL
Sbjct:  172 SDNEFVVGKRVKVYWSGSRRWFIGRIVAFDNKNRLHRILY-EDGDEEVLDL 221
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BLAST of mRNA_S-ischiensis_contig11.2021.1 vs. uniprot
Match: A0A6A1WV84_9ROSI (DNA mismatch repair protein MSH6 n=1 Tax=Morella rubra TaxID=262757 RepID=A0A6A1WV84_9ROSI)

HSP 1 Score: 57.4 bits (137), Expect = 1.000e-6
Identity = 29/50 (58.00%), Postives = 32/50 (64.00%), Query Frame = 2 
Query:   35 DGTTVVGNRIRVYWDGDDKWFIGRIIDFDLERGEHLISYDEDGDEEWTDL 184
            D   VVG R++VYW G  KWFIGRI  FD E+  H I Y EDGD E  DL
Sbjct:  257 DNDRVVGKRVKVYWSGSRKWFIGRIKAFDNEKRLHNILY-EDGDREMLDL 305
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BLAST of mRNA_S-ischiensis_contig11.2021.1 vs. uniprot
Match: A0A7S3Q114_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q114_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.120e-6
Identity = 43/131 (32.82%), Postives = 63/131 (48.09%), Query Frame = 2 
Query:   35 DGTTVVGNRIRVYWDGDDKWFIGRIIDFDLERGEHLISYDEDGD-------EEWTDLSQALGIISCKIVWAKMRSFPWWPAQIY-------EPI-GKSTVKKGVHEH-RPGHAYCVFFGTDECAWVAYGED 379
            DG+ V G R+RV+ D    W  GRI+ +D    +H + + E  +       EEW  L++    +  K VWA ++ F WWPAQ+        +P+  KS VK    +  R G+    FF +DE A V    D
Sbjct:  199 DGSKV-GYRLRVWDDTKSYWRSGRIVRYDPISHKHKVIFFEFSNAGESSYTEEWRYLNEENVQMGGKFVWALVKGFAWWPAQVLRCTFSKSKPLKSKSNVKDLTSQPVRDGYVLVEFFDSDEVASVKDSSD 328
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BLAST of mRNA_S-ischiensis_contig11.2021.1 vs. uniprot
Match: A0A1U8QBI5_NELNU (uncharacterized protein LOC104585916 isoform X1 n=2 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8QBI5_NELNU)

HSP 1 Score: 55.5 bits (132), Expect = 4.680e-6
Identity = 25/52 (48.08%), Postives = 34/52 (65.38%), Query Frame = 2 
Query:   35 DGTTVVGNRIRVYWDGDDKWFIGRIIDFDLERGEHLISYDEDGDEEWTDLSQ 190
            D   +VG R++++W G  KWF+GRI  FD E+  H I YD DGD+E  DL +
Sbjct:  196 DYDRIVGKRVKIFWSGSRKWFVGRIKSFDTEKKLHKIFYD-DGDKEELDLKK 246
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D8LHU3_ECTSI2.510e-3246.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3YHW1_HETAK8.460e-1035.71Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A5J5C717_9ASTE2.280e-856.00Uncharacterized protein n=1 Tax=Nyssa sinensis Tax... [more]
A0A5J5AFU8_9ASTE2.910e-751.92Uncharacterized protein n=1 Tax=Nyssa sinensis Tax... [more]
A0A5B7B686_DAVIN3.750e-752.00Putative midasin n=2 Tax=Davidia involucrata TaxID... [more]
UPI000C1D15295.710e-728.47uncharacterized protein LOC111392351 n=1 Tax=Olea ... [more]
A0A061GT97_THECC7.410e-754.90Uncharacterized protein isoform 1 n=3 Tax=Byttneri... [more]
A0A6A1WV84_9ROSI1.000e-658.00DNA mismatch repair protein MSH6 n=1 Tax=Morella r... [more]
A0A7S3Q114_9STRA1.120e-632.82Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A1U8QBI5_NELNU4.680e-648.08uncharacterized protein LOC104585916 isoform X1 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:527156..529522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size461
Cds size459
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2021.1prot_S-ischiensis_contig11.2021.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 527156..529521 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815576.3926115-CDS-S-ischiensis_contig11:527155..5273021622815576.3926115-CDS-S-ischiensis_contig11:527155..527302Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 527156..527302 +
1695739780.8420773-CDS-S-ischiensis_contig11:527155..5273021695739780.8420773-CDS-S-ischiensis_contig11:527155..527302Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 527156..527302 +
1622815576.4095123-CDS-S-ischiensis_contig11:527819..5279311622815576.4095123-CDS-S-ischiensis_contig11:527819..527931Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 527820..527931 +
1695739780.85158-CDS-S-ischiensis_contig11:527819..5279311695739780.85158-CDS-S-ischiensis_contig11:527819..527931Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 527820..527931 +
1622815576.421109-CDS-S-ischiensis_contig11:529321..5295211622815576.421109-CDS-S-ischiensis_contig11:529321..529521Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 529322..529521 +
1695739780.8615038-CDS-S-ischiensis_contig11:529321..5295211695739780.8615038-CDS-S-ischiensis_contig11:529321..529521Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 529322..529521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2021.1

>prot_S-ischiensis_contig11.2021.1 ID=prot_S-ischiensis_contig11.2021.1|Name=mRNA_S-ischiensis_contig11.2021.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=153bp
ETAGLGAGVEGRRHHGGGQPHTGVLGRGRQVVHREDHRLRPGARRAPHQL
RRGWRRGMDRPVPGAGHHLVQDCLGQDAVFPMVARADLRAHRQVHREEGR
ARAPARARLLRVFRHGRVRLGGLRGGPAGPSPFHPRGRGHARSGGGGGRG
GAQ
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mRNA from alignment at S-ischiensis_contig11:527156..529522+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2021.1 ID=mRNA_S-ischiensis_contig11.2021.1|Name=mRNA_S-ischiensis_contig11.2021.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2367bp|location=Sequence derived from alignment at S-ischiensis_contig11:527156..529522+ (Schizocladia ischiensis KU_0333)
GAAACTGCCGGCCTGGGGGCAGGCGTGGAGGGCCGACGGCACCACGGTGG
TGGGCAACCGCATACGGGTGTATTGGGACGGGGACGACAAGTGGTTCATC
GGGAGGATCATCGACTTCGACCTGGAGCGCGGCGAGCACCTCATCAGGTG
GGTGCGGTCGGCGTTTTTAAAACTGTGTATGTACTGGGAGGGAGGGGTCC
TGCTCCGTCTCAACAGAGGCGCGTAGTCAATGCTCTCGGGACTACGGCAA
GCACCACGTGCGTATATATATATATATATATATATATATATATATATATG
CCGTGCTTCGATCGATGTCCTGTGCTGTTACGATTTCTCGAGGGGCGGTT
CGACTGACTGCCTGTTTTTCCTCCCCTCTGCGTGCGCGCCTGGGCATTTG
TTTGATCGTGCCATCGTCCTCTTTACTCTAATGGGTTACGGATACTTGTG
CTGCATCCCCCACACACCCTGGGCCTGACCGCTGCCGGCGCCCCCGCCGT
TGCGCGCTGCCGCCTCCCCGGCCGCGGCATTCCTCATTGTAACCACGCCT
GATGGGGCGTGGGCCGGGCTCGTGCAACTTCTCACCCCGCACGCCTTTCG
ATGTATTCTATTGCTGCTCCCTAACTGGTGGCGGGCGGCGGCGGCGGTGG
CTGGGGGGCTGCAGCTACGACGAGGATGGAGACGAGGAATGGACCGACCT
GTCCCAGGCGCTGGGCATCATCTCGTGCAAGATTGTTTGGGCCAAGATGC
GGTCTTTCCCATGGTGGCCCGCGCAGGTGCAGCGCTCGTGTGTGATTCAT
ATAAATTGTAATGAGGTACAATCGCATGTGTGTGAGATTGAGCGTCCTGG
CATACTTGGTTATCCCATTTAAGAATTGAGTGTTCTTGTATTAGCGGTTA
TCGCATTAAAGAACTAAAAACAAGGCCCCCCATCTGTGTCGTGTGCTTGC
GCTGCGCACGCCTGAGCTACAGCAGTCGGGAGACCGCTGTCCCTGCGCCC
CTTCCGAGAAGGGAGGGAAACGCCTCCCGACCCTGGGTGGCTGCGACTGC
TGCACAGTACGAGTGCCCGTACAGTAGTACAGTACTGTAAGGGCCACTGT
TGAGGTCTTTAGTGACATGGCCTGCACCTCGCCGCCGTGTTCTTCCGGTT
CGTGCTGCAGTGTACTGAAGCACTGTACTGTACTGTACGTGTACACTGCG
TGTACAGTAGTACTGTACGGTGCATTTAGTGCTTGGCTTGTCCCTTGCGG
GGCTGTCACGGTGCACGACTGACTCTACGTGCTGCGGGTACTGACGTTTC
AGTACAGTCGTCGATAACGCCTGGTTTGGCGAGCCGAGCGACACGTGATT
ATATAGATATGAACACATGTGTACTTCCAAGTATACCTATTGTAGTCTCC
CAACTGCTTGGGTTATTTGAAACTCCTTCTCCTTAGCTACTTAGGGTACT
TTTCCAAAAAGCGATCTCGGGACAAGTACGCACAGTGTACTGACTGCCTT
AGCATGTGCCGTAGTTTACAGTACAAGTATGCACGGCGCCGTGTCGTCCT
CTGAGGGGTACTCTGCCGCGCCCAACCCAGACAGGCGTGGGGAGAAGAAA
GGGCAGGCTGCTCTCGCCCGGGCCGCACCCACACATTGTAAGTTCGTGGG
CCAGAGTCGGTCTTCTGAATGTCAGTTGCGGGACCTTCGCTTCTGGGGCC
CACTACCTACTTGTGGAAGTACCTGCTGTACAACTTTCCTTGCTGCTGCT
TCCAAGTACGTGCAATACTACTATACAGTGCCTTGGAAGTATGTACGCCC
CGTGCGTCCCCGAGGTCTTCTGTAAGCGGCAGACTTGAAGGCCCTGGTGG
CCTGGTCTGCCCTTTGGAAAAACGTTTAAAAGGAGACTTTATTGCTGTAG
TCCCAGCGCTGCTGCTTGCAGACACTACAGTAAGTACACCGCCCCCACCG
GCATCATCATCATCAACAACAACAACAACAAGGCAGAGATTTCCCGCTGC
TGACCGCCCGCGCCTCCCCTCCCCCCCCCGCCCCGCCCCACCTCCCAACC
TGGCGGTCGCGCTGACGGTGGCCACCTGTGGCGGCGGTTCCTCGATCCCT
CCGTGATACACACGTCATGCCCTGCGATTCCTGTACGACAAAATGATGGG
TCGTGTCGTGTTGAAGATCTACGAGCCCATCGGCAAGTCCACCGTGAAGA
AGGGCGTGCACGAGCACCGGCCCGGGCACGCCTACTGCGTGTTTTTCGGC
ACGGACGAGTGCGCCTGGGTGGCCTACGGGGAGGACCCGCCGGCCCTTCG
CCTTTTCACCCCCGGGGACGAGGGCATGCACGCAGCGGTGGCGGCGGCGG
CCGGGGGGGGGCGCAAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:527156..529522+

>mRNA_S-ischiensis_contig11.2021.1 ID=mRNA_S-ischiensis_contig11.2021.1|Name=mRNA_S-ischiensis_contig11.2021.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=918bp|location=Sequence derived from alignment at S-ischiensis_contig11:527156..529522+ (Schizocladia ischiensis KU_0333)
GAAACTGCCGGCCTGGGGGCAGGCGTGGAGGGCCGACGGCACCACGGTGG
TGGGCAACCGCATACGGGTGTATTGGGACGGGGACGACAAGTGGTTCATC
GGGAGGATCATCGACTTCGACCTGGAGCGCGGCGAGCACCTCATCAGGAA
ACTGCCGGCCTGGGGGCAGGCGTGGAGGGCCGACGGCACCACGGTGGTGG
GCAACCGCATACGGGTGTATTGGGACGGGGACGACAAGTGGTTCATCGGG
AGGATCATCGACTTCGACCTGGAGCGCGGCGAGCACCTCATCAGCTACGA
CGAGGATGGAGACGAGGAATGGACCGACCTGTCCCAGGCGCTGGGCATCA
TCTCGTGCAAGATTGTTTGGGCCAAGATGCGGTCTTTCCCATGGTGGCCC
GCGCAGCTACGACGAGGATGGAGACGAGGAATGGACCGACCTGTCCCAGG
CGCTGGGCATCATCTCGTGCAAGATTGTTTGGGCCAAGATGCGGTCTTTC
CCATGGTGGCCCGCGCAGATCTACGAGCCCATCGGCAAGTCCACCGTGAA
GAAGGGCGTGCACGAGCACCGGCCCGGGCACGCCTACTGCGTGTTTTTCG
GCACGGACGAGTGCGCCTGGGTGGCCTACGGGGAGGACCCGCCGGCCCTT
CGCCTTTTCACCCCCGGGGACGAGGGCATGCACGCAGCGGTGGCGGCGGC
GGCCGGGGGGGGGCGCAAATCTACGAGCCCATCGGCAAGTCCACCGTGAA
GAAGGGCGTGCACGAGCACCGGCCCGGGCACGCCTACTGCGTGTTTTTCG
GCACGGACGAGTGCGCCTGGGTGGCCTACGGGGAGGACCCGCCGGCCCTT
CGCCTTTTCACCCCCGGGGACGAGGGCATGCACGCAGCGGTGGCGGCGGC
GGCCGGGGGGGGGCGCAA
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