mRNA_S-ischiensis_contig11.2015.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2015.1
Unique NamemRNA_S-ischiensis_contig11.2015.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig11.2015.1 vs. uniprot
Match: D7FRY5_ECTSI (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, chloroplast n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRY5_ECTSI)

HSP 1 Score: 922 bits (2384), Expect = 0.000e+0
Identity = 463/596 (77.68%), Postives = 528/596 (88.59%), Query Frame = 1 
Query:    1 GYDTPLVADIHFQPKVAMLVAEAFEKIRVNPGNFVDGRKTFDEFVYETKEEYDEEREFIEESFKPLVLKCKELGRAIRIGTNHGSLSARVLSFYGDTPRGMVESAVEFAEICRRYDFHNFVFSMKASNPLVMAQAYRLLAAEQYRRGWDYPLHLGVTEAGEGEDGRMKSAIGIGALLQDGLGDTIRVSLTEDPELELEPCYTLAQIGKEAVANQDMHTAVPAFTETSRDFKDFQRRAGALPAQQEGDPIDVRGFLHRDGSVLTHVSLDDLKNPDLLYRKLGCKLAVGMPFKDIATSDSLYLPEVPPASDKQARTALRRLQEVGVGVLAPLAALQATPLPNAVAVVTLEEAAAAGGKLSLPEGAVRLAVDIKGTEPDLSVLDSMSPAPVMGLLTVPEGVSRVHAARRVFQYLADTNNDLAVIHRVAMSGATASEISQDRFILTVGSEVGGCLVDGLGDGVLLQSPGQDMDVLRTTSFGLLQGSRMRNTKTEYVSCPSCGRTLFDLQEVTAQIQEKTGHLPGVSIAIMGCIVNGVGEMADADFGYVGGAPGKVDLYVGKEVVQRAIPNEEACDALVNLIKEHGRWVDKEEVEEEGAAA 1788
            GYD PLVADIHFQPKVAM VAE FEKIR+NPGNFVDGRKTF+E+VY++KEE+D +   IE SFKPLVLKCKELGRA+RIGTNHGSLSARVLS+YGDTPRGMVESAVEFA ICR+YDFHNFVFSMKASNPLVM QAYRLLAAEQYRRGWDYPLHLGVTEAGEGEDGRMKSAIGIGALL DGLGDTIRVSLTEDPE EL PC  LA+IGK A A+   H AVPAF ET+RDF+ F+RR GALP QQE DP+DVRG+LHRDGSV+  +S++DL+NP  LY+ LG K AVGMPFKDIAT+DS+YL +VP   DK+ART+LRR+QE GVGVLAPLAAL+A P+ NAVAVV+LE+ A +GG+++LPEGA+RLAV+I+GTE DLSVL ++SP P++GLL VP GVSRVHA+RRVFQ+LAD  NDLAVIH  +   A  SE++QD+FIL+VG++VGGCLVDGLGDGV++Q+PG D+ +LR+  FGLLQG RMRNTKTEYVSCPSCGRTLFDLQEVTAQI EKTGHLPGV+IAIMGCIVNGVGEMADADFGYVGGAPGKVDLYVGKE+VQ+ IPNEEACDAL++LIK +GRWVDKE  EEE  AA
Sbjct:  103 GYDVPLVADIHFQPKVAMDVAEVFEKIRINPGNFVDGRKTFEEYVYDSKEEFDADLIPIEASFKPLVLKCKELGRAMRIGTNHGSLSARVLSYYGDTPRGMVESAVEFANICRKYDFHNFVFSMKASNPLVMVQAYRLLAAEQYRRGWDYPLHLGVTEAGEGEDGRMKSAIGIGALLMDGLGDTIRVSLTEDPEFELSPCAELAEIGKRATADTAGHAAVPAFEETTRDFQSFERRTGALPEQQETDPVDVRGYLHRDGSVMMPISVEDLQNPQALYQVLGFKTAVGMPFKDIATTDSVYLEQVPATDDKKARTSLRRMQEAGVGVLAPLAALEANPIANAVAVVSLEDVAKSGGQVNLPEGAIRLAVEIEGTE-DLSVLSNISPKPMVGLLNVPAGVSRVHASRRVFQHLADAKNDLAVIHLASFPDA--SEMTQDKFILSVGAQVGGCLVDGLGDGVMVQAPGLDVGMLRSVCFGLLQGCRMRNTKTEYVSCPSCGRTLFDLQEVTAQIAEKTGHLPGVAIAIMGCIVNGVGEMADADFGYVGGAPGKVDLYVGKEMVQKGIPNEEACDALIDLIKANGRWVDKEPAEEEVVAA 695
[Close]
BLAST of mRNA_S-ischiensis_contig11.2015.1 vs. uniprot
Match: A0A835YGL0_9STRA (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase chloroplast n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGL0_9STRA)

HSP 1 Score: 893 bits (2307), Expect = 0.000e+0
Identity = 453/596 (76.01%), Postives = 521/596 (87.42%), Query Frame = 1 
Query:    1 GYDTPLVADIHFQPKVAMLVAEAFEKIRVNPGNFVDGRKTFDEFVYETKEEYDEEREFIEESFKPLVLKCKELGRAIRIGTNHGSLSARVLSFYGDTPRGMVESAVEFAEICRRYDFHNFVFSMKASNPLVMAQAYRLLAAEQYRRGWDYPLHLGVTEAGEGEDGRMKSAIGIGALLQDGLGDTIRVSLTEDPELELEPCYTLAQIGKEAVANQDMHTAVPAFTETSRDFKDFQRRAGALPAQQEGDPIDVRGFLHRDGSVLTHVSLDDLKNPDLLYRKLGCKLAVGMPFKDIATSDSLYLPEVPPASDKQARTALRRLQEVGVGVLAPLAALQATPLPNAVAVVTLEEAAAAGGKLSLPEGAVRLAVDIKGTEPD--LSVLDSMSPAPVMGLLTVPEGVSRVHAARRVFQYLADTNNDLAVIHRVAMSGATASEISQDRFILTVGSEVGGCLVDGLGDGVLLQSPGQDMDVLRTTSFGLLQGSRMRNTKTEYVSCPSCGRTLFDLQEVTAQIQEKTGHLPGVSIAIMGCIVNGVGEMADADFGYVGGAPGKVDLYVGKEVVQRAIPNEEACDALVNLIKEHGRWVDKEEVEEEGA 1782
             YD P+VADIHF P+VAMLVA+AFEKIR+NPGNF DGRKTFDE+VYE+KEEYD E   I    +PLV+KC++LGRA+RIGTNHGSLSARVLS+YGDTPRGMVESAVEFAEICR  ++HNFVFSMKASNPLVM QAYRLLAAEQYRRGWDYPLHLGVTEAGEGEDGRMKSAIGIGALLQDGLGDTIRVSLTEDPE ELEPC TLA IGK+ V +   +TAVP FTET+R+F+ F+RR G LP+QQ  DP+D+RG LHRDGSVL+ V+L DL  PDLLYR+LGCKLAVGMPFKDIAT DS++L EVPPA D+QARTALRRLQEVGVGVLAP+ AL+A+PLPN++AVV+LE+ AAAGGK+ LPEG +R  + +KGTE D  L++L +  PA V  LL  P GVSR+HAARRVFQ L+DT++ L+VIH + M    A++++ D+FILTVGSE G  LVDGLGDGV++++PG D+D +RTTSFGLLQGSRMRNTKTEYVSCPSCGRTLFDLQEVT QIQEKTGHLPGVSIAIMGCIVNGVGEMADADFGYVGGAPGKVDLYVGKE+V+RAIPNE+ACDAL+ LIK++GRW +KE VEEE A
Sbjct:  101 NYDIPIVADIHFNPRVAMLVADAFEKIRINPGNFADGRKTFDEYVYESKEEYDAEIPEIAAVLEPLVVKCRDLGRAMRIGTNHGSLSARVLSYYGDTPRGMVESAVEFAEICRGLNYHNFVFSMKASNPLVMVQAYRLLAAEQYRRGWDYPLHLGVTEAGEGEDGRMKSAIGIGALLQDGLGDTIRVSLTEDPEFELEPCRTLANIGKQKVEDVAAYTAVPEFTETTRNFQSFERRRGELPSQQAADPVDIRGVLHRDGSVLSAVTLKDLAQPDLLYRRLGCKLAVGMPFKDIATVDSIFLREVPPADDRQARTALRRLQEVGVGVLAPIEALKASPLPNSLAVVSLEDWAAAGGKVELPEGVLRAVLTVKGTESDDALAMLGTGCPA-VFALLETPAGVSRIHAARRVFQALSDTSSTLSVIHHMNMP--QAADLNNDQFILTVGSEAGAALVDGLGDGVMIEAPGLDLDAVRTTSFGLLQGSRMRNTKTEYVSCPSCGRTLFDLQEVTQQIQEKTGHLPGVSIAIMGCIVNGVGEMADADFGYVGGAPGKVDLYVGKEMVKRAIPNEQACDALIQLIKDNGRWKEKE-VEEEPA 692
[Close]
BLAST of mRNA_S-ischiensis_contig11.2015.1 vs. uniprot
Match: A0A383W8H6_TETOB (Uncharacterized protein n=3 Tax=Scenedesmaceae TaxID=3086 RepID=A0A383W8H6_TETOB)

HSP 1 Score: 800 bits (2067), Expect = 3.260e-284
Identity = 409/591 (69.20%), Postives = 473/591 (80.03%), Query Frame = 1 
Query:    1 GYDTPLVADIHFQPKVAMLVAEAFEKIRVNPGNFVDGRKTFDEFVYETKEEYDEEREFIEESFKPLVLKCKELGRAIRIGTNHGSLSARVLSFYGDTPRGMVESAVEFAEICRRYDFHNFVFSMKASNPLVMAQAYRLLAAEQYRRGWDYPLHLGVTEAGEGEDGRMKSAIGIGALLQDGLGDTIRVSLTEDPELELEPCYTLAQIGKEAVANQDMHTAVPAFTETSRDFKDFQRRAGALPAQQEGDPIDVRGFLHRDGSVLTHVSLDDLKNPDLLYRKLGCKLAVGMPFKDIATSDSLYLPEVPPASDKQARTALRRLQEVGVGVLAPLAALQATPLPNAVAVVTLEEAAAAGGKLSLPEGAVRLAVDIKGTEPDLSVLDSMSPAPVMGLLTVPEGVSRVHAARRVFQYLADTNNDLAVIHRVAMSGATASEISQDRFILTVGSEVGGCLVDGLGDGVLLQSPGQDMDVLRTTSFGLLQGSRMRNTKTEYVSCPSCGRTLFDLQEVTAQIQEKTGHLPGVSIAIMGCIVNGVGEMADADFGYVGGAPGKVDLYVGKEVVQRAIPNEEACDALVNLIKEHGRWVDKEEVEE 1773
            GYD PLVADIHFQP VAM+VAEAFEKIR+NPGNF DGRKTF+E  Y+   E++ ER  IEE F PLVLKCKELGRA+RIGTNHGSLSAR+LSFYGDTP+GMVESA EFA+ICR++D+HNFVFSMKASNPLVM QAYRLLA EQY+RGWDYPLHLGVTEAGEGEDGRMKSAIGIGALL DGLGDTIRVSLTEDPE E++PC  LA +G+ A +       VP F+ET+RD   F RR G LP Q+EGD +D R  LHRDG+V + VSL DLK P+ LYRKLG KL VGMPFKDIATSDS+++ ++P  SD +AR ALRRLQEVGV VLAP AAL A PLP AVAV+TL EA AAGGK   P GA RLA+ + GTE D  +    S   V+ LL   +GVSRVH++RRVF  +    +++ V+H +  +  T     +D  ++  GS VGG LVDGLGDG ++++ G+D+D LRTTSFGLLQGSRMRN KTEYVSCPSCGRTLFDLQEVT QI++KTGHLPGV+IA+MGCIVNG GEMADADFGYVGGAPGK+DLYVGKEVVQR IP + ACDALV LIK++GRWVD  E EE
Sbjct:  138 GYDVPLVADIHFQPAVAMMVAEAFEKIRINPGNFADGRKTFEEINYDDPAEFEAERAHIEEVFTPLVLKCKELGRAMRIGTNHGSLSARILSFYGDTPKGMVESAFEFADICRKHDYHNFVFSMKASNPLVMVQAYRLLAEEQYKRGWDYPLHLGVTEAGEGEDGRMKSAIGIGALLMDGLGDTIRVSLTEDPEYEMDPCKRLASLGETACSEG---WGVPEFSETTRDTHTFSRRVGVLPEQREGDELDFRPLLHRDGTVFSAVSLADLKQPEALYRKLGAKLVVGMPFKDIATSDSIFMRQLPAESDAEARRALRRLQEVGVHVLAPAAALAANPLPGAVAVMTLAEALAAGGKA--PAGASRLALSLNGTESDEQLAAIKSVDAVVALLDTSDGVSRVHSSRRVFDAIKRAGSEIPVLHHIRFAAGT----HRDEVVIKTGSWVGGLLVDGLGDGAMIEAEGEDLDFLRTTSFGLLQGSRMRNVKTEYVSCPSCGRTLFDLQEVTEQIRQKTGHLPGVAIAVMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKEVVQRGIPMDSACDALVQLIKDNGRWVDLPEPEE 719
[Close]
BLAST of mRNA_S-ischiensis_contig11.2015.1 vs. uniprot
Match: A0A150GJ77_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GJ77_GONPE)

HSP 1 Score: 778 bits (2010), Expect = 3.680e-276
Identity = 391/585 (66.84%), Postives = 468/585 (80.00%), Query Frame = 1 
Query:    1 GYDTPLVADIHFQPKVAMLVAEAFEKIRVNPGNFVDGRKTFDEFVYETKEEYDEEREFIEESFKPLVLKCKELGRAIRIGTNHGSLSARVLSFYGDTPRGMVESAVEFAEICRRYDFHNFVFSMKASNPLVMAQAYRLLAAEQYRRGWDYPLHLGVTEAGEGEDGRMKSAIGIGALLQDGLGDTIRVSLTEDPELELEPCYTLAQIGKEAVANQDMHTAVPAFTETSRDFKDFQRRAGALPAQQEGDPIDVRGFLHRDGSVLTHVSLDDLKNPDLLYRKLGCKLAVGMPFKDIATSDSLYLPEVPPASDKQARTALRRLQEVGVGVLAPLAALQATPLPNAVAVVTLEEAAAAGGKLSLPEGAVRLAVDIKGTEPDLSVLDSMSPAPVMGLLTVPEGVSRVHAARRVFQYLADTNNDLAVIHRVAMSGATASEISQDRFILTVGSEVGGCLVDGLGDGVLLQSPGQDMDVLRTTSFGLLQGSRMRNTKTEYVSCPSCGRTLFDLQEVTAQIQEKTGHLPGVSIAIMGCIVNGVGEMADADFGYVGGAPGKVDLYVGKEVVQRAIPNEEACDALVNLIKEHGRWVD 1755
             YD PLVADIHFQP VAM+VA+AFEKIR+NPGNF DGRKTF+   Y+   E++ ERE IEE+F PLVLKCK+LGRA+RIGTNHGSLSAR+LSFYGDTPRGMVESA EFA++CR++D+HNFVFSMKASNPLVM QAYRLL+ E Y++GWDYPLHLGVTEAGEGEDGRMKSAIGIGALL DGLGDTIRVSLTEDPE E++PC  LA +G+ A A+      V  F ET+RD  +F+RR G LP Q+EG+ +D RG LHRDGSV + VSL++LK P+ LY++LG KLAVGMPFKDIAT+DS+ L EVPP+SDK  R ALRRLQEV   V+APL AL   PLP A+A+V+L+ AAA G  L LP+G+ R A+++ GTE + ++    S   +  L+   EGVSR+H++RRVF  +        VIH +     T     +D  ++T GS VGG LVDGLGDG +++ PG+D+D LRTT+FGLLQGSRMRNTKTEYVSCPSCGRTLF+LQEVT QI+ +TGHLPGV+IA+MGCIVNG GEMADADFGYVGGAPGK+DLYVGKEVV+RAIP E ACD L+ LIKEHGRWV+
Sbjct:   93 SYDVPLVADIHFQPNVAMMVADAFEKIRINPGNFADGRKTFEVINYDDPREFEREREIIEETFTPLVLKCKQLGRAMRIGTNHGSLSARILSFYGDTPRGMVESAFEFADVCRKHDYHNFVFSMKASNPLVMVQAYRLLSEEMYKKGWDYPLHLGVTEAGEGEDGRMKSAIGIGALLMDGLGDTIRVSLTEDPEYEIDPCRRLAGLGEAACASG---LGVAPFAETTRDTHNFKRRVGDLPVQREGEDLDFRGALHRDGSVFSAVSLEELKQPEYLYKRLGAKLAVGMPFKDIATADSVILSEVPPSSDKDGRRALRRLQEVTTHVIAPLDALAKDPLPGAIALVSLKRAAAGG--LQLPQGSTRWAIEVDGTEDEATLAKLASLDAITILINTAEGVSRLHSSRRVFDAIKRAGVTSPVIHHIRFPAGT----HRDEIVITTGSLVGGLLVDGLGDGAVIECPGEDVDFLRTTAFGLLQGSRMRNTKTEYVSCPSCGRTLFNLQEVTDQIRTRTGHLPGVAIAVMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKEVVRRAIPMESACDQLIELIKEHGRWVE 668
[Close]
BLAST of mRNA_S-ischiensis_contig11.2015.1 vs. uniprot
Match: A0A7S3UZY5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UZY5_HETAK)

HSP 1 Score: 779 bits (2012), Expect = 6.770e-276
Identity = 415/599 (69.28%), Postives = 471/599 (78.63%), Query Frame = 1 
Query:    1 GYDTPLVADIHFQPKVAMLVAEAFEKIRVNPGNFVDGRKTFDEFVYETKEEYDEEREFIEESFKPLVLKCKELGRAIRIGTNHGSLSARVLSFYGDTPRGMVESAVEFAEICRRYDFHNFVFSMKASNPLVMAQAYRLLAAEQYRRG--WDYPLHLGVTEAGEGEDGRMKSAIGIGALLQDGLGDTIRVSLTEDPELELEPCYTLAQIGKEAVANQDMHTAVPAFTETSRDFKDFQRRAGALPAQQEGDPIDVRGFLHRDGSVLTHVSLDDLKNPDLLYRKLGCKLAVGMPFKDIATSDSLYLPEVPPASDKQARTALRRLQEVGVGVLAPLAALQATPLPNAVAVVTLEEAAAAGGKLSLPEGAVRLAVDIKGTEPDLS--VLDSMSPAPVMGLLTVPEGVSRVHAARRVFQYLADTNNDLAVIHRVAMSGATASEISQDRFILTVGSEVGGCLVDGLGDGVLLQSPGQDMDVLRTTSFGLLQGSRMRNTKTEYVSCPSCGRTLFDLQEVTAQIQEKTGHLPGVSIAIMGCIVNGVGEMADADFGYVGGAPGKVDLYVGKEVVQRAIPNEEACDALVNLIKEHGRWVDKEEVEEEGAA 1785
             Y+TPLVADIHFQPKVAM+VA+AFEKIRVNPGNF DG K F + V++T++E+    + IEE   PLVLKCKEL RA+RIGTNHGSLSAR++S+YGD+PRGMVESA+EFA ICR+ D+HNF+FSMKASNPLVM Q YRLLA+E YR G  W+YPLHLGVTEAGEGEDGRMKSAIGIG LL DGLGDTIRVSLTEDPE ELEPC  LA+ GK+A        AVP F ET R F DF RR G LP Q+E D  ++R  LHRDGSVLT V++  L+ PD LYR LGCK AVGMPFKDIATSDSLYL EVP A D  ART LRRLQE GVGV+AP AAL A P+PNAVAVV+LEEAA   G ++LPEGA R AV + G E D +  VL +++  P M LL VP  VSR+HAARRVF+ L  T N++ VIH +A       E+S D  I+  G   G  LVDGLGDGVL+++P    + LR  SFGLLQGSRMRNTKTEYVSCPSCGRTLFDLQEVT  IQE TGHLPGVSIA+MGCIVNGVGEMADADFGYVGGAPGKVDLYVGKE+VQ+ IPNEEAC+ALV LIK+H RWV+K  VEEE AA
Sbjct:  133 NYNTPLVADIHFQPKVAMMVADAFEKIRVNPGNFADGAKKFTDDVFDTEDEFLAGLDDIEEMLTPLVLKCKELNRAMRIGTNHGSLSARIMSWYGDSPRGMVESALEFANICRKNDYHNFLFSMKASNPLVMVQGYRLLASELYRLGGDWNYPLHLGVTEAGEGEDGRMKSAIGIGTLLADGLGDTIRVSLTEDPEFELEPCRLLAETGKKATLFIPGMDAVPKFEETGRSFTDFSRRQGDLPVQREEDQAEMRYLLHRDGSVLTAVTVAQLQQPDQLYRDLGCKTAVGMPFKDIATSDSLYLAEVPAADDAAARTTLRRLQEAGVGVVAPAAALAAAPVPNAVAVVSLEEAAQ--GPVALPEGAARWAVAVTGVEDDAAFGVLKALADPPAMALLKVPGDVSRLHAARRVFEQLHRTQNNVPVIHHLAFG-----EVSNDELIIGSGIGAGALLVDGLGDGVLVEAPHVGTNQLRLQSFGLLQGSRMRNTKTEYVSCPSCGRTLFDLQEVTQTIQEATGHLPGVSIAVMGCIVNGVGEMADADFGYVGGAPGKVDLYVGKEMVQKGIPNEEACEALVELIKKHDRWVEKP-VEEEVAA 723
[Close]
BLAST of mRNA_S-ischiensis_contig11.2015.1 vs. uniprot
Match: A8ILN4_CHLRE (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase n=4 Tax=Chlamydomonas TaxID=3052 RepID=A8ILN4_CHLRE)

HSP 1 Score: 776 bits (2003), Expect = 3.560e-275
Identity = 398/591 (67.34%), Postives = 463/591 (78.34%), Query Frame = 1 
Query:    4 YDTPLVADIHFQPKVAMLVAEAFEKIRVNPGNFVDGRKTFDEFVYETKEEYDEEREFIEESFKPLVLKCKELGRAIRIGTNHGSLSARVLSFYGDTPRGMVESAVEFAEICRRYDFHNFVFSMKASNPLVMAQAYRLLAAEQYRRGWDYPLHLGVTEAGEGEDGRMKSAIGIGALLQDGLGDTIRVSLTEDPELELEPCYTLAQIGKEAVANQDMHTAVPAFTETSRDFKDFQRRAGALPAQQEGDPIDVRGFLHRDGSVLTHVSLDDLKNPDLLYRKLGCKLAVGMPFKDIATSDSLYLPEVPPASDKQARTALRRLQEVGVGVLAPLAALQATPLPNAVAVVTLEEAAAAGGKLSLPEGAVRLAVDIKGTEPDLSVLDSMSPAPVMGLLTVPEGVSRVHAARRVFQYLADTNNDLAVIHRVAMSGATASEISQDRFILTVGSEVGGCLVDGLGDGVLLQSPGQDMDVLRTTSFGLLQGSRMRNTKTEYVSCPSCGRTLFDLQEVTAQIQEKTGHLPGVSIAIMGCIVNGVGEMADADFGYVGGAPGKVDLYVGKEVVQRAIPNEEACDALVNLIKEHGRWVDKEEVEEE 1776
            YD PLVADIHFQP VAM+VA+AFEKIRVNPGNF DGRKTFD   Y+   E++ ERE IEE+F PLVLKCKELGRAIRIGTNHGSLSAR+LS+YGDTPRGMVESA EFA++CR++D+HNFVFSMKASNPLVM QAYRLLA EQY+R WDYPLHLGVTEAGEGEDGRMKSAIGIGALL DGLGDTIRVSLTEDPE E++PC  LA +G+ A  +      V  F ET+RD   F RR G LP Q  G+ +D RG LHRDG+V   VSL DLK P+ LY++LG KLAVGMPFKDIAT+DS+ L EVP A+DK AR ALRRLQEV   V+AP+ AL   PLP A+A+V L++AAA  G + LPEG+ R+AV I GTE +  +    +  P++ LL   +GVSR+H++RRVF  L        VIHR+     T     +D  ++T GS VGG LVDGLGDG +++ PG+D D LRTT+FGLLQG RMRN KTEYVSCPSCGRTLF+LQEVT QI+ +TGHLPGV+IA+MGCIVNG GEMADADFGYVGGAPGK+DLYVGKEVV+R IP E ACD L+ LIKEHGRWV+   VEEE
Sbjct:   93 YDVPLVADIHFQPTVAMMVADAFEKIRVNPGNFADGRKTFDVINYDDPREFERERELIEETFTPLVLKCKELGRAIRIGTNHGSLSARILSYYGDTPRGMVESAFEFADVCRKHDYHNFVFSMKASNPLVMVQAYRLLAEEQYKRSWDYPLHLGVTEAGEGEDGRMKSAIGIGALLMDGLGDTIRVSLTEDPEFEMDPCKRLAGLGERAWGSG---LGVAPFPETTRDTHTFTRRVGDLPVQAPGEDLDFRGALHRDGTVYNAVSLADLKQPEFLYKRLGAKLAVGMPFKDIATADSIVLSEVPAAADKDARRALRRLQEVTTHVIAPIEALAKDPLPGAIALVALQQAAA--GPVQLPEGSTRMAVQIDGTETEAELAAIKALNPIVALLATKDGVSRLHSSRRVFDVLKRHGITTPVIHRITFPAGTV----RDEIVITTGSLVGGLLVDGLGDGAMVECPGEDTDFLRTTAFGLLQGCRMRNIKTEYVSCPSCGRTLFNLQEVTDQIRTRTGHLPGVAIAVMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKEVVRRGIPMESACDQLIELIKEHGRWVEPA-VEEE 673
[Close]
BLAST of mRNA_S-ischiensis_contig11.2015.1 vs. uniprot
Match: A0A835XZX4_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XZX4_9CHLO)

HSP 1 Score: 773 bits (1996), Expect = 3.970e-274
Identity = 390/591 (65.99%), Postives = 472/591 (79.86%), Query Frame = 1 
Query:    4 YDTPLVADIHFQPKVAMLVAEAFEKIRVNPGNFVDGRKTFDEFVYETKEEYDEEREFIEESFKPLVLKCKELGRAIRIGTNHGSLSARVLSFYGDTPRGMVESAVEFAEICRRYDFHNFVFSMKASNPLVMAQAYRLLAAEQYRRGWDYPLHLGVTEAGEGEDGRMKSAIGIGALLQDGLGDTIRVSLTEDPELELEPCYTLAQIGKEAVANQDMHTAVPAFTETSRDFKDFQRRAGALPAQQEGDPIDVRGFLHRDGSVLTHVSLDDLKNPDLLYRKLGCKLAVGMPFKDIATSDSLYLPEVPPASDKQARTALRRLQEVGVGVLAPLAALQATPLPNAVAVVTLEEAAAAGGKLSLPEGAVRLAVDIKGTEPDLSVLDSMSPAPVMGLLTVPEGVSRVHAARRVFQYLADTNNDLAVIHRVAMSGATASEISQDRFILTVGSEVGGCLVDGLGDGVLLQSPGQDMDVLRTTSFGLLQGSRMRNTKTEYVSCPSCGRTLFDLQEVTAQIQEKTGHLPGVSIAIMGCIVNGVGEMADADFGYVGGAPGKVDLYVGKEVVQRAIPNEEACDALVNLIKEHGRWVDKEEVEEE 1776
            YD PLVADIHFQP VAM+VAEAFEKIR+NPGNFVDGRK+F+   Y+   E+ +ERE IEE+F PLVLKCKELGRA+RIGTNHGSLSAR+LS+YGDTPRGMVESA EFA++CR++D+HNFVFSMKASNPLVM  AYRLL+ E Y++GWDYPLHLGVTEAGEGEDGRMKSAIGIGALL DGLGDTIRVSLTEDPE E++PC  LA +G+   ++      VPAFTET+RD   F+RR G LP QQ G+ +D RG LHRDG+V   VSL+DLK P+  Y++LG KLAVGMPFKDIAT+DS+ + E+P +SDK  R ALRRLQEV   V+AP+ AL   PLP AVA+V+L++A A G  ++LPEG+ R A+++ GTE +  +      AP++ L++   GVSR+H++RRVF  +        +IH ++    T     +D  ++T GS VGG LVDGLGDG +++ PG+DMD LRTT+FGLLQGSRMRN KTEYVSCPSCGRTLF+LQEVT QI+ +TGHLPGV+IA+MGCIVNG GEMADADFGYVGGAPGK+DLYVGKEVV+RAIP E ACD L+ LIKEHGRWV+  +VEEE
Sbjct:   91 YDVPLVADIHFQPAVAMMVAEAFEKIRINPGNFVDGRKSFEVINYDDPAEFAKERELIEETFTPLVLKCKELGRAVRIGTNHGSLSARILSYYGDTPRGMVESAFEFADVCRKHDYHNFVFSMKASNPLVMVSAYRLLSEEMYKKGWDYPLHLGVTEAGEGEDGRMKSAIGIGALLMDGLGDTIRVSLTEDPEYEIDPCKRLAGLGE---SSWGKGLGVPAFTETTRDTHVFKRRVGDLPQQQAGEDLDFRGALHRDGTVFCAVSLEDLKQPEFTYKRLGAKLAVGMPFKDIATADSIVMREIPSSSDKDGRRALRRLQEVTTHVIAPVEALAKDPLPGAVALVSLKKAVAGG--VALPEGSTRWAIEVDGTETEEELGALKKLAPMVVLISTAPGVSRLHSSRRVFDAIKRHEITTPIIHAISFPKGTM----RDEIVITTGSLVGGLLVDGLGDGAMIECPGEDMDFLRTTAFGLLQGSRMRNIKTEYVSCPSCGRTLFNLQEVTDQIRTRTGHLPGVAIAVMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKEVVRRAIPMESACDQLIELIKEHGRWVEPPKVEEE 672
[Close]
BLAST of mRNA_S-ischiensis_contig11.2015.1 vs. uniprot
Match: D8U477_VOLCA (Uncharacterized protein n=4 Tax=Volvox TaxID=3066 RepID=D8U477_VOLCA)

HSP 1 Score: 773 bits (1995), Expect = 5.430e-274
Identity = 393/593 (66.27%), Postives = 471/593 (79.43%), Query Frame = 1 
Query:    4 YDTPLVADIHFQPKVAMLVAEAFEKIRVNPGNFVDGRKTFDEFVYETKEEYDEEREFIEESFKPLVLKCKELGRAIRIGTNHGSLSARVLSFYGDTPRGMVESAVEFAEICRRYDFHNFVFSMKASNPLVMAQAYRLLAAEQYRRGWDYPLHLGVTEAGEGEDGRMKSAIGIGALLQDGLGDTIRVSLTEDPELELEPCYTLAQIGKEAVANQDMHTAVPAFTETSRDFKDFQRRAGALPAQQEGDPIDVRGFLHRDGSVLTHVSLDDLKNPDLLYRKLGCKLAVGMPFKDIATSDSLYLPEVPPASDKQARTALRRLQEVGVGVLAPLAALQATPLPNAVAVVTLEEAAAAGGKLSLPEGAVRLAVDIKGTEPDLSVLDSMSPAPVMGLLTVPEGVSRVHAARRVFQYLADTNNDLAVIHRVAMSGATASEISQDRFILTVGSEVGGCLVDGLGDGVLLQSPGQDMDVLRTTSFGLLQGSRMRNTKTEYVSCPSCGRTLFDLQEVTAQIQEKTGHLPGVSIAIMGCIVNGVGEMADADFGYVGGAPGKVDLYVGKEVVQRAIPNEEACDALVNLIKEHGRWVDKEEVEEEGA 1782
            YD PLVADIHFQP VAM+VA+AFEKIR+NPGNFVDGRK+FD   Y+    ++ ERE IEE+F PLVLKCK+LGRA+RIGTNHGSLSAR+LSFYGDTPRGMVESA EFA++CR++D+HNFVFSMKASNPLVM QAYRLLA E Y++GWDYPLHLGVTEAGEGEDGRMKSAIGIGALL DGLGDTIRVSLTEDPE E++PC  LA +G+ A +       V  FTET+RD   F+RR G LP Q EG+ +D RG LHRDG+V + VSL+DLK P++ Y+KLG KLAVGMPFKDIATSDS+ L E+PP++DK+ R ALRRLQEV   V+APL AL   PL  A+A+V L++A   G  ++LP+G+ R A+++ GTE +  +       P++ LL V +GVSR+HA+RRVF  +   N    VIH +     T     +D  ++  GS VGG LVDGLGDG L++ PG+D+D LRTT+FGLLQGSRMRNTKTEYVSCPSCGRTLF+LQEVT QI+++TGHLPGV+IA+MGCIVNG G MADADFGYVGGAPGK+DLYVGKEVV+RAIP E ACD L+ LIKE+GRWV+   VEEE A
Sbjct:   90 YDVPLVADIHFQPTVAMMVADAFEKIRINPGNFVDGRKSFDVINYDDPR-FERERELIEETFTPLVLKCKQLGRAVRIGTNHGSLSARILSFYGDTPRGMVESAFEFADVCRKHDYHNFVFSMKASNPLVMVQAYRLLAEEMYKKGWDYPLHLGVTEAGEGEDGRMKSAIGIGALLMDGLGDTIRVSLTEDPEYEIDPCKRLAGLGERAWSTG---LGVAPFTETTRDTHTFKRRVGDLPVQHEGEELDFRGALHRDGTVFSAVSLEDLKQPEVTYKKLGAKLAVGMPFKDIATSDSILLRELPPSADKEGRRALRRLQEVTTHVIAPLDALTRDPLAGAIALVPLKQAVQGG--IALPQGSSRWAIEVDGTETEEQLGALQGLGPIVVLLNVADGVSRLHASRRVFDAIKRHNVTAPVIHNIRFPAGT----HRDEIVINTGSLVGGLLVDGLGDGALIECPGEDLDFLRTTAFGLLQGSRMRNTKTEYVSCPSCGRTLFNLQEVTDQIRQRTGHLPGVAIAVMGCIVNGPGRMADADFGYVGGAPGKIDLYVGKEVVRRAIPMESACDQLIELIKEYGRWVEPPVVEEEEA 672
[Close]
BLAST of mRNA_S-ischiensis_contig11.2015.1 vs. uniprot
Match: I0Z4W2_COCSC (Putative chloroplast 1-hydroxy-2-methyl-2-(E)-butenyl-4-diphosphate synthase n=2 Tax=Coccomyxa TaxID=41891 RepID=I0Z4W2_COCSC)

HSP 1 Score: 775 bits (2000), Expect = 1.080e-273
Identity = 405/595 (68.07%), Postives = 463/595 (77.82%), Query Frame = 1 
Query:    1 GYDTPLVADIHFQPKVAMLVAEAFEKIRVNPGNFVDGRKTFDEFVYETKEEYDEEREFIEESFKPLVLKCKELGRAIRIGTNHGSLSARVLSFYGDTPRGMVESAVEFAEICRRYDFHNFVFSMKASNPLVMAQAYRLLAAEQYRRGWDYPLHLGVTEAGEGEDGRMKSAIGIGALLQDGLGDTIRVSLTEDPELELEPCYTLAQIGKEAVANQDMHTAVPAFTETSRDFKDFQRRAGALPAQQEGDPIDVRGFLHRDGSVLTHVSLDDLKNPDLLYRKLGCKLAVGMPFKDIATSDSLYLPEVPPASDKQARTALRRLQEVGVGVLAPLAALQATPLPNAVAVVTLEEAAAA--GGKLSLPEGAVRLAVDIKGTEPDLSVLDSMSPAPVMGLLTVPEGVSRVHAARRVFQYLADTNNDLAVIH-RVAMSGATASEISQDRFILTVGSEVGGCLVDGLGDGVLLQSPGQDMDVLRTTSFGLLQGSRMRNTKTEYVSCPSCGRTLFDLQEVTAQIQEKTGHLPGVSIAIMGCIVNGVGEMADADFGYVGGAPGKVDLYVGKEVVQRAIPNEEACDALVNLIKEHGRWVDKEEVEEE 1776
            GYD PLVADIHFQP+VAM+VAEAFEKIR+NPGNF DGRKTF+   Y+   ++  E+E I E+F PLV KCK LGRA+RIGTNHGSLSAR+LS+YGDTPRGMVESA EFA+ICR +D+HNF+FSMKASNPLVM QAYRLLA E Y +GWDYPLHLGVTEAGEGEDGRMKSAIGIGALL DGLGDTIRVSLTEDPELE+ PC  LA  G+ A         V  F E  RD   F RRAG LP Q+EGDP+D R  LHRDGSVL+ V+L +L+ P+L YRKLG KL VGMPFKD ATSD+L LPEVP +SDK  R AL RLQEVGV V+AP AAL+A PL +AVA   L EAAAA   G + LPEGA R AV + GTEP+  V        V+ LL V  GVSRVHA+RR F+ L   + D+ VIH RV  +G     +S+D  +LT G+E+G  LVDGLGDGV ++ P +D+D LRT SFGLLQGSRMRNTKTEYVSCPSCGRTLFDLQEVT QI+ +TGHLPGVSIA+MGCIVNG GEMADADFGYVGGAPGK+DLYVGKEVV+R IP + ACD LV LIKEHGRW + +  EE+
Sbjct:  146 GYDVPLVADIHFQPQVAMMVAEAFEKIRINPGNFADGRKTFEVINYDDPAQFKAEQEHIRETFTPLVEKCKRLGRAMRIGTNHGSLSARILSYYGDTPRGMVESAFEFADICRDHDYHNFLFSMKASNPLVMVQAYRLLAEEMYAKGWDYPLHLGVTEAGEGEDGRMKSAIGIGALLMDGLGDTIRVSLTEDPELEIVPCGKLAGFGERACREG---FGVDPFPEAHRDIHTFTRRAGRLPEQREGDPVDFRPLLHRDGSVLSAVTLQELEKPELTYRKLGAKLVVGMPFKDQATSDTLLLPEVPASSDKDKRRALARLQEVGVHVIAPAAALEADPLQHAVAAFPLSEAAAAVRAGGVRLPEGAGRFAVSVDGTEPEEDVAALRDSGAVLALLNVAPGVSRVHASRRFFERLQSHDIDIPVIHQRVFPAG-----VSRDELVLTSGTEIGALLVDGLGDGVAIECPSEDLDFLRTMSFGLLQGSRMRNTKTEYVSCPSCGRTLFDLQEVTEQIRTQTGHLPGVSIAVMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKEVVRRGIPMDGACDQLVELIKEHGRWKEPDAEEED 732
[Close]
BLAST of mRNA_S-ischiensis_contig11.2015.1 vs. uniprot
Match: A0A7S0VYW6_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VYW6_9CRYP)

HSP 1 Score: 766 bits (1978), Expect = 8.790e-271
Identity = 400/595 (67.23%), Postives = 465/595 (78.15%), Query Frame = 1 
Query:    1 GYDTPLVADIHFQPKVAMLVAEAFEKIRVNPGNFVDGRKTFDEFVYETKEEYDEEREFIEESFKPLVLKCKELGRAIRIGTNHGSLSARVLSFYGDTPRGMVESAVEFAEICRRYDFHNFVFSMKASNPLVMAQAYRLLAAEQYRRGWDYPLHLGVTEAGEGEDGRMKSAIGIGALLQDGLGDTIRVSLTEDPELELEPCYTLAQIGKEAVANQDMHTAVPAFTETSRDFKDFQRRAGALPAQQEGDPIDVRGFLHRDGSVLTHVSLDDLKNPDLLYRKLGCKLAVGMPFKDIATSDSLYLPEVPPASDKQARTALRRLQEVGVGVLAPLAALQATPLPNAVAVVTLEEAAAAGGKLSLPEGAVRLAVDIKGTEPDLSVLDSMSPAPVMGLLTVPEGVSRVHAARRVFQYLADTNNDLAVIHRVAMSGATASEISQDRFILTVGSEVGGCLVDGLGDGVLLQ-SPGQDMDVLRTTSFGLLQGSRMRNTKTEYVSCPSCGRTLFDLQEVTAQIQEKTGHLPGVSIAIMGCIVNGVGEMADADFGYVGGAPGKVDLYVGKEVVQRAIPNEEACDALVNLIKEHGRWVDKEEVEEEGA 1782
            GY TPLVADIHF PKVAM+VAE F+KIRVNPGNF DGRKTF E  YE  E+Y  E +FIEE+F PLVLKCKE GRA+RIGTNHGSLSAR LS+YGDTP GMVESA EFA ICR++D+HNF+FSMKASNP VM  AYRLLAAE Y  GWDYPLHLGVTEAGEGEDGRMKSAIGIG+LLQDGLGDTIRVSLTEDP LEL+PC  L  I      N+    AVP + ET+RDFK+F +R G LP Q+EGDPID+R  LHRDGSV++ V  + L +PD LY  LGCK AVGMPFKD+ATSDS+ L    PASDK ARTALRR+QEVG+GV++P A L+ +P+ NA+A+  L EAA +G    LPEGA+R AV + G E D  + +  S  P++ +L VP+GVSRVHA+RRVF++L     +  VIH +       SE  +D  +L  GSEVG  LVDG GDGV +Q SP  D+  LRTTSFGLLQGSRMRNTKTEYVSCPSCGRTLFDLQ VT +I + TGHLPGV+IA+MGCIVNG GEMADADFGYVGGAPGK+DLYVGKEVV++AIP+ EA   L+ LIK+H RWVDK+ V+EEGA
Sbjct:  134 GYTTPLVADIHFAPKVAMMVAECFDKIRVNPGNFADGRKTFKEINYENPEDYQAELDFIEETFTPLVLKCKEEGRAMRIGTNHGSLSARTLSYYGDTPAGMVESAFEFARICRKHDYHNFLFSMKASNPKVMVSAYRLLAAEMYDLGWDYPLHLGVTEAGEGEDGRMKSAIGIGSLLQDGLGDTIRVSLTEDPWLELDPCKKLRGIADGQRENKVWSQAVPTWRETTRDFKEFTKREGQLPLQKEGDPIDIRNVLHRDGSVVSVVPPEALSSPDALYHDLGCKTAVGMPFKDLATSDSILLTGPVPASDKAARTALRRMQEVGIGVISPAAVLKESPIDNAIALFDLSEAAESGA--GLPEGAIRAAVTVTGAEGDQELAELKSLDPLLIMLKVPDGVSRVHASRRVFEHLKKEGLETPVIHHIEHG----SEHGKDDVVLRTGSEVGVSLVDGNGDGVCIQGSP--DLSFLRTTSFGLLQGSRMRNTKTEYVSCPSCGRTLFDLQTVTEEISQSTGHLPGVTIAVMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKEVVRKAIPSAEAVGELIQLIKDHDRWVDKD-VDEEGA 719
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRY5_ECTSI0.000e+077.681-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate syn... [more]
A0A835YGL0_9STRA0.000e+076.011-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate syn... [more]
A0A383W8H6_TETOB3.260e-28469.20Uncharacterized protein n=3 Tax=Scenedesmaceae Tax... [more]
A0A150GJ77_GONPE3.680e-27666.84Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A7S3UZY5_HETAK6.770e-27669.28Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A8ILN4_CHLRE3.560e-27567.341-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate syn... [more]
A0A835XZX4_9CHLO3.970e-27465.99Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
D8U477_VOLCA5.430e-27466.27Uncharacterized protein n=4 Tax=Volvox TaxID=3066 ... [more]
I0Z4W2_COCSC1.080e-27368.07Putative chloroplast 1-hydroxy-2-methyl-2-(E)-bute... [more]
A0A7S0VYW6_9CRYP8.790e-27167.23Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:451843..462755 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score926.0
Seed ortholog evalue8.8e-267
Seed eggNOG ortholog2880.D7FRY5
Preferred nameHDS
KEGG rclassRC01486
KEGG koko:K03526
KEGG ReactionR08689,R10859
KEGG Pathwayko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130
KEGG ModuleM00096
GOsGO:0001101,GO:0002376,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006793,GO:0006796,GO:0006950,GO:0006952,GO:0006955,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009607,GO:0009617,GO:0009627,GO:0009719,GO:0009725,GO:0009751,GO:0009814,GO:0009862,GO:0009863,GO:0009941,GO:0009987,GO:0010033,GO:0014070,GO:0016491,GO:0016725,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0023052,GO:0031967,GO:0031975,GO:0032787,GO:0032870,GO:0035690,GO:0042221,GO:0042493,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045087,GO:0046429,GO:0046490,GO:0046677,GO:0048037,GO:0050789,GO:0050794,GO:0050896,GO:0051536,GO:0051539,GO:0051540,GO:0051704,GO:0051707,GO:0051716,GO:0052592,GO:0055114,GO:0065007,GO:0070887,GO:0071229,GO:0071236,GO:0071310,GO:0071407,GO:0071446,GO:0071495,GO:0071704,GO:0090407,GO:0098542,GO:1901135,GO:1901576,GO:1901700,GO:1901701
EggNOG free text desc.4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity
EggNOG OGs2QSBY@2759,COG0821@1
EC1.17.7.1,1.17.7.3
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog description1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, chloroplast precursor
Ec32 orthologEc-03_003610.1
Exons13
Model size1788
Cds size1788
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815589.3341334-CDS-S-ischiensis_contig11:451842..4519891622815589.3341334-CDS-S-ischiensis_contig11:451842..451989Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 451843..451989 +
1695739788.304673-CDS-S-ischiensis_contig11:451842..4519891695739788.304673-CDS-S-ischiensis_contig11:451842..451989Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 451843..451989 +
1622815589.3472059-CDS-S-ischiensis_contig11:454198..4543931622815589.3472059-CDS-S-ischiensis_contig11:454198..454393Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 454199..454393 +
1695739788.3172197-CDS-S-ischiensis_contig11:454198..4543931695739788.3172197-CDS-S-ischiensis_contig11:454198..454393Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 454199..454393 +
1622815589.3567147-CDS-S-ischiensis_contig11:455159..4552511622815589.3567147-CDS-S-ischiensis_contig11:455159..455251Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 455160..455251 +
1695739788.3273714-CDS-S-ischiensis_contig11:455159..4552511695739788.3273714-CDS-S-ischiensis_contig11:455159..455251Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 455160..455251 +
1622815589.3688757-CDS-S-ischiensis_contig11:455890..4560711622815589.3688757-CDS-S-ischiensis_contig11:455890..456071Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 455891..456071 +
1695739788.339776-CDS-S-ischiensis_contig11:455890..4560711695739788.339776-CDS-S-ischiensis_contig11:455890..456071Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 455891..456071 +
1622815589.3785229-CDS-S-ischiensis_contig11:456415..4565321622815589.3785229-CDS-S-ischiensis_contig11:456415..456532Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 456416..456532 +
1695739788.3564024-CDS-S-ischiensis_contig11:456415..4565321695739788.3564024-CDS-S-ischiensis_contig11:456415..456532Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 456416..456532 +
1622815589.3896883-CDS-S-ischiensis_contig11:456819..4569241622815589.3896883-CDS-S-ischiensis_contig11:456819..456924Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 456820..456924 +
1695739788.3653102-CDS-S-ischiensis_contig11:456819..4569241695739788.3653102-CDS-S-ischiensis_contig11:456819..456924Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 456820..456924 +
1622815589.3990088-CDS-S-ischiensis_contig11:457796..4579221622815589.3990088-CDS-S-ischiensis_contig11:457796..457922Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 457797..457922 +
1695739788.373872-CDS-S-ischiensis_contig11:457796..4579221695739788.373872-CDS-S-ischiensis_contig11:457796..457922Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 457797..457922 +
1622815589.4181318-CDS-S-ischiensis_contig11:458799..4589491622815589.4181318-CDS-S-ischiensis_contig11:458799..458949Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 458800..458949 +
1695739788.3816962-CDS-S-ischiensis_contig11:458799..4589491695739788.3816962-CDS-S-ischiensis_contig11:458799..458949Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 458800..458949 +
1622815589.4310226-CDS-S-ischiensis_contig11:459486..4596721622815589.4310226-CDS-S-ischiensis_contig11:459486..459672Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 459487..459672 +
1695739788.391311-CDS-S-ischiensis_contig11:459486..4596721695739788.391311-CDS-S-ischiensis_contig11:459486..459672Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 459487..459672 +
1622815589.4424264-CDS-S-ischiensis_contig11:460377..4605181622815589.4424264-CDS-S-ischiensis_contig11:460377..460518Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 460378..460518 +
1695739788.3992944-CDS-S-ischiensis_contig11:460377..4605181695739788.3992944-CDS-S-ischiensis_contig11:460377..460518Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 460378..460518 +
1622815589.4541495-CDS-S-ischiensis_contig11:461330..4614081622815589.4541495-CDS-S-ischiensis_contig11:461330..461408Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 461331..461408 +
1695739788.407359-CDS-S-ischiensis_contig11:461330..4614081695739788.407359-CDS-S-ischiensis_contig11:461330..461408Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 461331..461408 +
1622815589.4691007-CDS-S-ischiensis_contig11:461933..4620651622815589.4691007-CDS-S-ischiensis_contig11:461933..462065Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 461934..462065 +
1695739788.417407-CDS-S-ischiensis_contig11:461933..4620651695739788.417407-CDS-S-ischiensis_contig11:461933..462065Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 461934..462065 +
1622815589.48427-CDS-S-ischiensis_contig11:462617..4627551622815589.48427-CDS-S-ischiensis_contig11:462617..462755Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 462618..462755 +
1695739788.4262521-CDS-S-ischiensis_contig11:462617..4627551695739788.4262521-CDS-S-ischiensis_contig11:462617..462755Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 462618..462755 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2015.1prot_S-ischiensis_contig11.2015.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 451843..462755 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2015.1

>prot_S-ischiensis_contig11.2015.1 ID=prot_S-ischiensis_contig11.2015.1|Name=mRNA_S-ischiensis_contig11.2015.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=596bp
GYDTPLVADIHFQPKVAMLVAEAFEKIRVNPGNFVDGRKTFDEFVYETKE
EYDEEREFIEESFKPLVLKCKELGRAIRIGTNHGSLSARVLSFYGDTPRG
MVESAVEFAEICRRYDFHNFVFSMKASNPLVMAQAYRLLAAEQYRRGWDY
PLHLGVTEAGEGEDGRMKSAIGIGALLQDGLGDTIRVSLTEDPELELEPC
YTLAQIGKEAVANQDMHTAVPAFTETSRDFKDFQRRAGALPAQQEGDPID
VRGFLHRDGSVLTHVSLDDLKNPDLLYRKLGCKLAVGMPFKDIATSDSLY
LPEVPPASDKQARTALRRLQEVGVGVLAPLAALQATPLPNAVAVVTLEEA
AAAGGKLSLPEGAVRLAVDIKGTEPDLSVLDSMSPAPVMGLLTVPEGVSR
VHAARRVFQYLADTNNDLAVIHRVAMSGATASEISQDRFILTVGSEVGGC
LVDGLGDGVLLQSPGQDMDVLRTTSFGLLQGSRMRNTKTEYVSCPSCGRT
LFDLQEVTAQIQEKTGHLPGVSIAIMGCIVNGVGEMADADFGYVGGAPGK
VDLYVGKEVVQRAIPNEEACDALVNLIKEHGRWVDKEEVEEEGAAA
back to top

mRNA from alignment at S-ischiensis_contig11:451843..462755+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2015.1 ID=mRNA_S-ischiensis_contig11.2015.1|Name=mRNA_S-ischiensis_contig11.2015.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=10913bp|location=Sequence derived from alignment at S-ischiensis_contig11:451843..462755+ (Schizocladia ischiensis KU_0333)
GGGTACGACACCCCTTTGGTGGCAGACATCCACTTCCAGCCCAAGGTGGC
CATGCTGGTGGCCGAGGCCTTTGAGAAGATCCGTGTCAACCCCGGGAACT
TTGTGGACGGCCGCAAGACCTTCGACGAGTTTGTCTACGAGACCAAGGTG
AGCTTCAAGTATATATATATGCTCTCACTTGGTGCTTGCCCTAGTCCCGA
GACCCTTGACCCCTCGCCTCATTCGAGGCGGAGCAGGTATATATTTATAT
TTATATATACTCGTATATATATGTACTCACGTGCTTTATATGCTTCAAGT
ATACGTGTACTTCCGAGTACTTGCATGTACCAGTACAGCAGTGTACTGAC
AAGTGCAAGTTCAGTAGTAGAGTACTCTGGAAGACCTTGGACGAGTTTGT
TTACGAGACCGAGGTGAGCTTCGCGTTCGCGTATACGTGTAGAGTACTTC
CAAGCACCTTACCAGTACTCGACTGCAGTGCAGCGTGCACTGACAAGTGC
AACTACTCTGCTTCCATGGTGCAAGACCTTTGACGAGTTTGTCTAAGAGA
CCAAGGTGAGCTTCAAGTATATAGTGTGTATATGTACAGTACTCACGTTG
TGCTTGCCGCACTCCCGAGACCATTGTGTATATACGAGTATCTATTTGTA
TGCTTCGCGTTACGTGTACTTCCAAGTACCAGTACTCGACTGCAGTACAG
CAGTGTACTGACAAGTAACAGCAGAGTACTCTGCTCCCATGGTACTCACG
GCGAAGGGTGAACGGCGACTGTCGTGCATGCTGCAAAACAAAGTACCTGA
AAGTGCGTAGGTAGTACATACAGTAGTACACGTGCGAAAGTTGAAAGGTG
GGTTTAGTTTATATTGCGCACATGGTGGAGTACTCGCCCGAGTCAATGGC
TTAATAGATAGTGCTGTCGGAGGGCAACCCCATATATATATATATATATA
TTTACTTAGGGCTGTCGGCAAAGCACACAAGTTTCTGTCACAACACAAGC
AATGAGTACTCGAGTACATACTATGTAGTACTGTATGCTGGAAGTCTATT
ATGTATGTACTCACGTGGTGCTTGTATACATACAATTGTAGTATGAATAT
TGCACACGCAGTGCTCGCGTGAGTGATGGCTAAATAGCTACTCCAGCAGG
AGGGTAAACCTGAGGTTTTGACTTAACTGTGTAGTATAGTTAGTAGTCCT
CAAATGGTTTGACTATATCCATGTACCCGTATGGGTAGTACACAGCGCTG
TAGTTGAGCGTCAACAGCAGGAGGGCAGAGCCGAGGTTTAACTATTACTT
TGGGCTGTCTTGTCAAATGTGGAGGGACAGCTTTGTTGTGACACGTGAAT
GGATCATATACGAGTACCACATAGTATTTGCTTGGAATTACATTGCCAGG
GGCGGGAGGGAGAACGCTCCGTCGTCAACGGCACGTGGTCAATGGTCTCG
GGACTACGGCAAGCACACCGCAAGTACGTACTTCGAATTATGTACAGTGT
ATTACATACATATATATTTTACATACTGCCGAGTGCTTTCTTGGATACGG
CAAGTAGGGCGTGAATGGTGAGATTCGCCAGCTTGGGGCATGCAGAGTAT
ATGGGGGTGCAATAGCGCGATCATGCTACGCGGTATCCTGCTGTCGTACT
TTCGAGTACTTCCAAGTACTTTAATTCCAGCGAACAAGCACTATGCCTGT
ACTGCCTGCGAGACGTTGTAGAGTGGAGTGGGTAGAGCTGTCGTGGTTCG
CGAGGAACATACGTGTACAGTGCTTCCGAGCATACCTTTGCAGTACTCGT
ACTTCCAAGTACTTCCAAGCACGCGTTCACAGCGCCCAAGTACTCGCGTT
GCATTCGCCGTGCTCGAGTACAATAGACTACTACTGCTAGTAGTAGCAGT
ATATTTGGCGGGCCCCGAGACCGTGGGCCAAGCGCCTCGACCAAGGTGGG
GCAGGCGCTATTACAGTACAGCACCGACCAGTGATACTACTGCACTGTAC
TGTACCGTATCTACTTGCAAGTACTCGGGTACAAGAGCGATCCACGAGAA
GGAGCAAAGGCGAGGATTGTTCGGGTCTAGGGCGTGCATCTTAGAGACGA
GAAACCTCGTCCTAACGTGAGTACACGCACTTGGGTACGACACGCATGAT
ATCAACCTGCAACATGTATGATATTCCTCGCAGGAGGAGTACGACACATG
TAATACAATCACCCTACAACACGTACGAGTAAGTACTTATGATATCCCTC
TTTCAGGAGGAGTGACAAGGAGCGGGAGTTCATCGAGGAATCCGTACAAC
ACATGTATTGCAATCACCGTACAACATGGTCTTAACTTATGATATCCATC
TTTCAGGAGGAGTACGATGAGGAGCGCGAGTTCATCGAGGAGTCCTTCAA
GCCGCTCGTGCTCAAGTGCAAGGAGCTGGGCCGCGCCATCCGCATCGGGA
CCAACCACGGGTCTCTGTCGGCGCGCGTGCTTTCCTTCTACGGGGACACC
CCCCGGGGCATGGTGGAGAGCGCCGTGGAGTTTGCGGAGATCTGCAGGCG
GGTGCATTTGTACTGCTGGTTTAGAGTTATGTATTGATAAAAAAATTGAT
GATCATATTGAGTGCATATTGCATATTGATCAATATTGATGTACTTGTAT
GGGGACACCCCCCGGGGCACGGTGGAGAGCGCAGTGGAGTTTGCGGAGAT
CTGCTGGCGGGTGCCCATTGTGTCAGAACATCTGCATCCATCATGTTTAT
AACGACACACATGGCATCTTGTCCGCTCATACAAGGTTCTCTGCAACCCC
TTATGTGCTCCTACACTGCACTTCGAAGTACAGTACTGCTGGCTGCGTTG
TTGAGTGTGTGCGGCTCGTAGCTGACAAGCTTGTAGAGGTATGGAGGTGT
GTGTGTGTGCACATGCTTGGAGTTTGCGGAGATCTGCAGGCGGGTGCATT
GTGCAGTGTGTGCGGCCCGTAACTGAGAAGTTTGTAGAGGTATCGAGGCG
GGTGCTTGTGCACGTGCTTGCTGCGCTGCTTGCTGTACTATAGTGTGACC
CCCCCTCCGTCTCTCTACCCTCTCTCCCTCTCCATTGCTCTCTACGCCCA
TTCTGTTTCTGGCGCCAACTGTCCCTTGCTCTCCTTCCCTTTCCCCCCCT
CCCCTGCTCCCCCCCCTCTCTGACTGTGCGCGCCCCTTGCCCCACCTCGG
CCGTCCAAATCGCAGAAATCGCTTCTGTTTCTGGTGCTGACTGCCCCTTG
CTCTCCTTCCCTCCCCCCCCTTCCCCCGCTCCTCTCCCCCCCCCCTTTTC
CCCGCCTCATCAGAAAGTATGACTTCCACAACTTTGTCTTCTCCATGAAG
GCGTCCAACCCGCTGGTCATGGCCCAGGCGTACCGTCTGCTGGCCGCCGA
GCAGTACAGGTGAGCCATTGCTATATACTTCGTACACTACTGTGCAGTCA
TAGAGTACAGTGCAGTACTCCTAGTACATTGCTGCGGGTGTAGGAGTACT
TCAGTTACTTCGAAGTAGAATTCACTCTGCCGTTTCAACAACTCCAAGGA
GGCTTGCGTGATCGCCGGCGTTGTGAGACCCACCCTCCCCCCTAAAGCAC
GACAACCGTCCAGTAGTGCTTGTGGGTATGTGGGTGGGAGGTTTGGGGGG
GGTAGGTTATGGGTACGCACACGCTATACTCAAAGTCACGTCTGCGTGTG
TTTGTGTGTGTGTGTGTGTGTCTGTTGCCAGGCGGGGCTGTGGGTATGTG
GGTGGGAGGTTTGGGGGGAGTAGTTTATGAGTACGCACACGATATACTCA
CATCTGCGTGTGCGTATGTGTCTGTTGCCAGGCGGGGCTGGGACTAGTAC
TGTAGTGTTTGCGGGTGGGAGGTTTGGGGGGGGTAGTTTATGGGTACGCA
AACGTTATACTCACGTCTGCGCGTGTGTGCGTGCGTGCATGTGTCTGTTG
CCAGGCGAGGGGGGGTAGTGTATGGGTTTGCACACGCTATAAGTACTTCG
AAGTACTCACGGCTGCGTGCATGTGTGCGTGTGTGTGTCTGTTGGCAGGC
GGGGCTGGGACTACCCCCTTCACCTGGGGGTGACAGAGGCCGGGGAAGGC
GAGGACGGCCGCATGAAGAGTGCCATCGGCATCGGTGCGCTGCTGCAGGA
TGGGCTGGGCGACACCATCCGCGTGTCCCTGACCGAGGACCCGGAACTAG
AGCTGGAGCCCTGCTACACTTTGGCGCAGGTGGGTGTGTGTGTGCGCGCG
CGCGTGTGCATGCGTGCGTGCGTATGCATACGGTTGTGTGTACAGTTGTG
TGTGTGCGTGCGCATGTGTGCATACGTGTGCGTGTGCATGTGAGTGTGCA
TGTGTGTGTGCTTGTGTGTGTGGGGGGGGATATACTCATGAGTGCTTGAG
TCCAGAGCCCCCCATACATGCACCGCCTGAGGCCCCCTGTCCTGTGCCTA
GCGACTGCTTCAAATTACCTACAGCACACAGATACTATAGTTGCCTATGC
ACTTGATTCCCCCAAAACTGGCCTGTAAACAACGCCGGTTCCTTCCAAAA
CGGGCCTCGCCTGTGTGCCGCAGATTGGCAAGGAGGCGGTGGCAAACCAG
GACATGCACACCGCGGTTCCCGCCTTTACCGAGACCAGCCGGGATTTCAA
GGACTTCCAGAGGCGTGCGGGGGCGCTGCCCGCTCAGCAGGTGCGGCGAG
AGGGGGCAGGGGGGCAGGGAAGGGGGCGTCGGAAGAATGGTGTCACATCA
AAGATGGGAACAAGATGGGAAGTGTCTGGGTCGACTGGATTGACCGACGG
ACTTGACGCATGCATAGTGACTCCTCTGTGCGTCCCTAACTTGGCGATAG
TTTAACCCTTTTGCCCCTGGGGTCTGTATAGTTATAGGGTTTTAGTGTGT
AGAGCTCTAAGTCCAATTAAGCTGGGGTGAAAGGGTTAATGTTGTTTCGG
ACGTGCAATGCTGTGGTGCTGGTGCAGGAAGGGGACCCCATCGACGTGCG
CGGCTTCCTGCACCGGGACGGGTCGGTCCTGACGCACGTGTCTCTTGACG
ACCTCAAGAACCCGGACCTGCTGTACCGCAAGGTGAGTGAGCTGCCCTCC
AGTGTGCTGATGGGCCGGTCGCGTGCATGCGTGCTTGCATGTGTGTTGGA
GCTCGTCTTCTCTTATTATTATTATTATTACTATTATTATTATTATGACT
ATTCTCCTCCTCCTCCTCCTCCTTCTCCTGCTTCTTCTTGTTCTTCTTCT
TCTCCTCCTCCTCCTCCTCCTCCTTTTTCTGCTTCTTCTTCTTCTTCTTC
TTCTTCTTTTCCCCTTCTCTTCTTTTGCTTCTTCTTCATGCCCATCTGCC
GGGTTTCTCGTTGACAGGTCAATTTTCGCAAGAACCTGCAAGTACTGCGT
CCAGAGGAAGTCCCCATCTTACGTGCCCACTGCCTTGCCTGGCCTTGCCT
GGCCTTTTGCCCCCTCCATTCCACAGAGGGCGGTGGGTTTCGCAGCACCC
ATCTCGTCCAGTAGAGCCCGCCCGCCTGCCCACCCGCCCCCCCCCCCCGC
CCGCCATGCATGTACACACGTGTCCATGCACGTGCGAATGTGTCCGTCAG
TCTGCATGCTTGCGGACACTCACGCCCTTGCGGGAGGAGTGTTGCCACCG
TGGTCACCCTGCGCTACAGCAATGTACTCTACCTCAACTCACAACCCCTG
GCCTCTCCTTTTTTAATTATTGTGATGGTGTGCGAGTTCCGGGCCCCGTC
CCAACAACCTCAGGCGGGGACTGCGCCCGGAGCCCTTCCCTGCCCTGACC
GCGATCGTCAATCGCAACACCTCAATGTTACCTTGCCTGCAGCTGGGCTG
CAAGCTAACCCTGTGCTAGTGTAGCTCAACTCACAACCCCTGGCCTCTCC
TGCCCTGAATGCGATCATCAATCACGACACCTTTTTCTTTCACCTTTCCT
GCAGCTGGGCTGCAAGCTGGCGGTGGGCATGCCGTTCAAGGACATTGCCA
CCTCCGACAGCCTGTACCTGCCCGAGGTCCCCCCGGCCTCCGACAAGCAG
GCCCGCACTGCCCTGCGCCGCCTCCAGGAGGTGAGGAGGAAAAGAGTGCT
TTCATTTAGTGCACTTGCCTTGGAAAGTACCCTTCTTTTCCCCCCCCCCT
GTTTTGTTTGTAGTTACTGTATTCGATGTGATAACCACTCATATACGAAC
ACTCAATCTCACACCCGTGCGATTGTACCTCGTTGCAATTTATATGAATC
AACCCCCCCCCCCCAAGGACCCCCCCTTCCCCCTCCCTTCTCGTCCACAT
GCCTTGTGTTGTTACTTCCAAGTACTTCTGCAATTTCCCTGAACGCCCTC
ACCACTTCTCGAACCACCCCCCATACCGTGCAGTAGCCAGCGTTTGGCTC
TTGGGCGCCGACTGACTTTGTTTCGTGGGCCGCCTACTACTACTACTACT
GTACTGCTTCACTGCACTTCCAAGTGCTTACTGTACTGTATTGTACTGTA
CCGGTACTGTACTGTACTGTACTGTACTGTACTGTACTTTTGCGTGTACT
TGGCAAATGATTACTAGTGCACGGCTCTGTCCCGGACGAGGGGCGCGGCC
AGCGGTCGAGCTCATCACAACGTGAGCACATGAATTGACATGCACGGTAC
TCAACAAGTACAGTACAGTATGGTCTTCCTCTGGCTAGGTACATACTCAT
GTATTCGAGTGCTTACTCATATGCTTACAGCACAGCAGTACTGCCACGCT
TAGCACGGCATGAGTGACAGCCAGTACGTGTAAGCATACAAGCACTACGT
AGTATATGCTTCACCCTTCTACCCCTGGGGTCCATATATTCATACGGTTT
CAGTGTGTAAGTCCAAGTTACCAGGGGTTAAAGGGTTGACCTCACGTGGC
ACAAGTACTTGTAGCAGAGTTCTCACAAACGCTTGCTCTTCATGGCTGCG
GGTGCAGGTGGGCGTTGGGGTCCTGGCCCCGCTGGCCGCCCTGCAGGCCA
CCCCTCTCCCCAACGCCGTGGCAGTGGTCACCCTGGAGGAGGCCGCCGCT
GCTGGGGGAAAGCTGTCCCTGCCGGAAGGGGCTGTGCGCCTGGCTGTTGA
CATCAAGGTGGGCCAAACCGTCGCCTCAGGCTCGAGGCATTTTTTGTTCA
AACTTCCCAAGTACGACTTACGTTGTACTTCGAAGTAAGAGTACTACTGT
ACTCGTAGGTATGGTATACAGTACGCGACACCAAGGAAGAATCTCCAAAA
TTCTTCCAGGGGCTGCTCTCTTGCAATTTGGTCAAGCTGCCTCTTTTCTT
GTGTGCCGCTTCCTTATTCTGCGAAATAGGGCTCGGGAGCAGTGCGCTTT
TCAGTGCCGGTCCTCACGCTATAGACCAGGGGGCATGCGCACACAAAACA
CACGCACACCGGATGAGTTGCCCCCCAGCGCCATGGCAGCACCATGCAAG
ACTCCGTGCCGCGCTAATACGTACTCCACTCTACTACAGTACCTACTCTA
TGTACTTCGAAGTAGTGCCTGGGTCGCACACCTCTTGCTCGCGCGCCGTG
CCGCCACTGCCCTTGTTCTAGCTCACATGCCGCTGCTGCCGCCACCGCCG
CCACATGATCGTCTTCGGCCACCACTCCTCCCCCTGTTCCGCAGGGCACG
GAGCCCGACCTGTCGGTGCTGGACTCCATGTCGCCCGCCCCCGTGATGGG
CCTCCTCACCGTCCCAGAAGGCGTGTCCAGGGTGCACGCCGCCCGCCGGG
TGTTCCAGTACCTGGCGGACACCAACAACGACTTGGCTGTCATCCACCGC
GTGGCTATGTCCGGGGCCACGGCTAGCGAGGTGGGTGGGTGGGGTGCGGT
GGGGTGGGGTGGGTGGGTGAAGTGTTCTAGCGAGGTGGGTGGGTGGGGTG
CGGTGGGGTGGGGTGGGTGAGTGAAGGTATGTTCCCGAGGTCTCTCTCGG
TGTGTGTGGGGGGGGTGGCTCAGAAGTTGAGCCTCGGGGGAATACGGCTA
TACCAAAACTGTACTTGGAGGTACGTCGAAGTAGGTAGGTACTACGTTGC
ACGGGACTTTTAAAGTAGGTGCTACATAGGTTATGTAGTGCATAGTAGGT
GCTTTGTAGTACGTGTGTGCAGTACTCTACGCAGTGGTGATGCAGCAGGC
GTTTGGTAGGTTAACACTCTGGTACGCCAAGCGAGGTTCAATCAAGCACT
GCAGTACAGCAGTGCTTCCAAGTGCTTTGAGAAAGTACGCAAGCACTGCA
GCGCAGGCACTCGACTACTGTACTCATACACTATCCTACACTACTCTACA
GGACGGTCTAGCACGTGGAATCATTGTACTGCAGTCCTCCCAGGTAACTT
TAGGCCCTCATGGCCCATCCTCTGCCTGTCCCCTCCCTACCGCCCTTCCC
TCGCTGTAATCCTCGTGGGCAACGTAGCCAGTGCGGTTTTTGTACAGACG
CGCACAGCACACAGCTCACAAACACCCCCCCCCACCCTCACCCCCCTCCG
TGCACACCGCCATATTTGCGCCGTCGGCAAAGCAGATATCTCAGGACCGC
TTCATCCTGACGGTGGGGTCTGAGGTGGGGGGCTGCCTGGTGGATGGTCT
GGGCGATGGGGTGCTCCTGCAGTCCCCCGGGCAGGACATGGACGTGCTGA
GGACAACCAGCTTCGGCCTGCTGCAGGTGCTGCACGTCACTTGTACAGTA
GAGTGTCCTGGGATACCATAGGGTACTCGAGTACTCCGTACATGATTTGT
TAAACCTCACTCGCATTGCGGTAGAGTGTCGTGGGATACCATAGGGTACA
CGATTTGTGAACGTCACTCGCAGGTGAATGCTGCTGGATGTGACGTGCTG
AGGACAACCAGCTTCGGCCTGCTGCGGGTGCTGTACTCGGAGTAGTTATG
TCACTTGTACAACAGAGTGTCCTGGGATACTTACCATAGGGTACTCGAGT
ACTCCGTAAATGATTTGATAAGACCTCACTCGCAGGTGATTGCTACTGTG
TGTACTCGTACTGTACCTACTGCCAAGTACTGCTGCGAAGCGACAATATT
GATATTGGCAGGGGTGACTATTTTAACCCTTTTCTCCTGTCTGCCGGGTG
TCATGCACCTTGAAGTGTTACGGTGCAAGTGCTACAGTAGAAACGCGAAC
GCAAGCACCGAGTAGGTTGTACAGTTGTACAGTTGTACAGTTGTGCATAG
AGTACTCGGGAGGTACTCGAACTTTGCACGAACGTTGCCACTGCAGTGAA
CACACAGCGCTTAGCAACACACGGGCGCCGTGGCGGGCAATCGAGCTGCA
GTGCAGTACGTGCCTTTCACACCAGCACCAGTGGGTGCAGGATAGGATGT
GGCCTGCACTTGTCAAATCTTCTTTCCCTCCATTCCCCCTCTCTCACTCA
AATCTCACACACGCGCGATTATACCTCGTTACGATTTATATGAATCACCC
CCTCTCTCACAGCATTGCCGCCCCCCTTCCCTGCGCAGGGCTCCCGCATG
CGCAACACCAAGACGGAGTACGTGTCCTGCCCCAGCTGTGGGCGGACCCT
TTTCGACCTCCAGGAGGTGAGCACACGCCCACGCACCCACCCGCATGCTG
ATGGTATTGCTGTGGTTGGGTGCCCCCCAACGGCCGTCGTGCTGGGCGAT
TTTTGTTGTTTTTCTTTTTTGGTTGGTTTGCTTGTCTTGTTGTGGTCACG
ATCATCGCCTCGGCCCTGCGCATTTGGCTCTGACCGAAAGAAAAAGTTGC
CCAGGTAGCCCCTGGAGGCGGTGTAATCGCTATGCTTTAGAACATGATGA
GGTTTGCGCACGTGTCGGAGGGTGCACTTTGGCGCTAGAGCTGGGCGGAC
GAGGACTCTGATGGCACTCAGCAAGTACGGTACGAGACATGAGTACTCGT
GCACGGGTACCACTGGCGAGCGATGATGCATCGTGCCCGGCCACTCGCGG
CGGCACGACTACTAGTAGTTAACCATCCCCTCGCGTACGCCCTCCTCCTC
CTCCCGGCCAACGTCCCCATGCCACTGCCACCGCCCCGGCCCGCTATTTA
CCTGCACCCCGCACGCCCGCATGCCTGCCCGACGCCGGCAGGTGACGGCA
CAAATCCAGGAGAAGACGGGCCACCTGCCCGGGGTGTCCATTGCCATCAT
GGGCTGCATCGTCAACGGTGTGGGGGAGATGGCGGACGCGGACTTTGGAT
ACGTGGGCGGCGCGCCGGGCAAGGTGAGCGGGGCGAGCGAGCGCGCGAGG
TTTGAGGGAGAGGAGTGAGAAAGCGCCCAGCGTTGCGAAGAAAGCGCCCG
GCCTTGCGCCAACTCTTTCTTGCACGCTGGGGCCGGACGATGGCAGATGT
TTGTGCCGCCCGGTGCTGCTCGGCGTGTGGCTGGTCGCTGCCATGGTCGT
GGGGGCAGCGCGTGAGAGAGTTCTCTTGGTTTTGTTTCGGGCCCTTTGCT
GACCCCTCGAGAGTACTTGGACGCAACCCTGAGTGGTGTGGCGGGTCATG
GCATTGAGCCCATTCTGTGCACGTACTCGTAGGTTCCCACCCCCGGTTTT
GCCCAGTACATGCTCCGTCTCAGTCGAGGCGCATGGTCCATGATCGCGGG
GCTACAGCAAGCACAGCGTAGGTACGTAAGTACAAAGTATATACTTCCAA
GGAAGTATGAAGTATAGATGTACTTCGAAGTATGTATACTTACTGCAATC
CCCGCCTGCCTTTGGCCTGCCCCCCCCCTCCCCCCCGGGTGTGCCACTGT
CGACCACCGTGGCCACACACAACAGGTGGACTTGTACGTAGGCAAGGAGG
TGGTGCAGAGGGCCATCCCCAACGAGGAGGCCTGCGACGCCCTTGTCAAC
CTCATCAAGGAGCATGGCCGTTGGGTGGACAAGGAGGAGGTGGAAGAGGA
GGGGGCCGCCGCC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig11:451843..462755+

>mRNA_S-ischiensis_contig11.2015.1 ID=mRNA_S-ischiensis_contig11.2015.1|Name=mRNA_S-ischiensis_contig11.2015.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=3576bp|location=Sequence derived from alignment at S-ischiensis_contig11:451843..462755+ (Schizocladia ischiensis KU_0333)
GGGTACGACACCCCTTTGGTGGCAGACATCCACTTCCAGCCCAAGGTGGC
CATGCTGGTGGCCGAGGCCTTTGAGAAGATCCGTGTCAACCCCGGGAACT
TTGTGGACGGCCGCAAGACCTTCGACGAGTTTGTCTACGAGACCAAGGGG
TACGACACCCCTTTGGTGGCAGACATCCACTTCCAGCCCAAGGTGGCCAT
GCTGGTGGCCGAGGCCTTTGAGAAGATCCGTGTCAACCCCGGGAACTTTG
TGGACGGCCGCAAGACCTTCGACGAGTTTGTCTACGAGACCAAGGAGGAG
TACGATGAGGAGCGCGAGTTCATCGAGGAGTCCTTCAAGCCGCTCGTGCT
CAAGTGCAAGGAGCTGGGCCGCGCCATCCGCATCGGGACCAACCACGGGT
CTCTGTCGGCGCGCGTGCTTTCCTTCTACGGGGACACCCCCCGGGGCATG
GTGGAGAGCGCCGTGGAGTTTGCGGAGATCTGCAGGCGGGAGGAGTACGA
TGAGGAGCGCGAGTTCATCGAGGAGTCCTTCAAGCCGCTCGTGCTCAAGT
GCAAGGAGCTGGGCCGCGCCATCCGCATCGGGACCAACCACGGGTCTCTG
TCGGCGCGCGTGCTTTCCTTCTACGGGGACACCCCCCGGGGCATGGTGGA
GAGCGCCGTGGAGTTTGCGGAGATCTGCAGGCGGTATGACTTCCACAACT
TTGTCTTCTCCATGAAGGCGTCCAACCCGCTGGTCATGGCCCAGGCGTAC
CGTCTGCTGGCCGCCGAGCAGTACAGTATGACTTCCACAACTTTGTCTTC
TCCATGAAGGCGTCCAACCCGCTGGTCATGGCCCAGGCGTACCGTCTGCT
GGCCGCCGAGCAGTACAGGCGGGGCTGGGACTACCCCCTTCACCTGGGGG
TGACAGAGGCCGGGGAAGGCGAGGACGGCCGCATGAAGAGTGCCATCGGC
ATCGGTGCGCTGCTGCAGGATGGGCTGGGCGACACCATCCGCGTGTCCCT
GACCGAGGACCCGGAACTAGAGCTGGAGCCCTGCTACACTTTGGCGCAGG
CGGGGCTGGGACTACCCCCTTCACCTGGGGGTGACAGAGGCCGGGGAAGG
CGAGGACGGCCGCATGAAGAGTGCCATCGGCATCGGTGCGCTGCTGCAGG
ATGGGCTGGGCGACACCATCCGCGTGTCCCTGACCGAGGACCCGGAACTA
GAGCTGGAGCCCTGCTACACTTTGGCGCAGATTGGCAAGGAGGCGGTGGC
AAACCAGGACATGCACACCGCGGTTCCCGCCTTTACCGAGACCAGCCGGG
ATTTCAAGGACTTCCAGAGGCGTGCGGGGGCGCTGCCCGCTCAGCAGATT
GGCAAGGAGGCGGTGGCAAACCAGGACATGCACACCGCGGTTCCCGCCTT
TACCGAGACCAGCCGGGATTTCAAGGACTTCCAGAGGCGTGCGGGGGCGC
TGCCCGCTCAGCAGGAAGGGGACCCCATCGACGTGCGCGGCTTCCTGCAC
CGGGACGGGTCGGTCCTGACGCACGTGTCTCTTGACGACCTCAAGAACCC
GGACCTGCTGTACCGCAAGGAAGGGGACCCCATCGACGTGCGCGGCTTCC
TGCACCGGGACGGGTCGGTCCTGACGCACGTGTCTCTTGACGACCTCAAG
AACCCGGACCTGCTGTACCGCAAGCTGGGCTGCAAGCTGGCGGTGGGCAT
GCCGTTCAAGGACATTGCCACCTCCGACAGCCTGTACCTGCCCGAGGTCC
CCCCGGCCTCCGACAAGCAGGCCCGCACTGCCCTGCGCCGCCTCCAGGAG
CTGGGCTGCAAGCTGGCGGTGGGCATGCCGTTCAAGGACATTGCCACCTC
CGACAGCCTGTACCTGCCCGAGGTCCCCCCGGCCTCCGACAAGCAGGCCC
GCACTGCCCTGCGCCGCCTCCAGGAGGTGGGCGTTGGGGTCCTGGCCCCG
CTGGCCGCCCTGCAGGCCACCCCTCTCCCCAACGCCGTGGCAGTGGTCAC
CCTGGAGGAGGCCGCCGCTGCTGGGGGAAAGCTGTCCCTGCCGGAAGGGG
CTGTGCGCCTGGCTGTTGACATCAAGGTGGGCGTTGGGGTCCTGGCCCCG
CTGGCCGCCCTGCAGGCCACCCCTCTCCCCAACGCCGTGGCAGTGGTCAC
CCTGGAGGAGGCCGCCGCTGCTGGGGGAAAGCTGTCCCTGCCGGAAGGGG
CTGTGCGCCTGGCTGTTGACATCAAGGGCACGGAGCCCGACCTGTCGGTG
CTGGACTCCATGTCGCCCGCCCCCGTGATGGGCCTCCTCACCGTCCCAGA
AGGCGTGTCCAGGGTGCACGCCGCCCGCCGGGTGTTCCAGTACCTGGCGG
ACACCAACAACGACTTGGCTGTCATCCACCGCGTGGCTATGTCCGGGGCC
ACGGCTAGCGAGGGCACGGAGCCCGACCTGTCGGTGCTGGACTCCATGTC
GCCCGCCCCCGTGATGGGCCTCCTCACCGTCCCAGAAGGCGTGTCCAGGG
TGCACGCCGCCCGCCGGGTGTTCCAGTACCTGGCGGACACCAACAACGAC
TTGGCTGTCATCCACCGCGTGGCTATGTCCGGGGCCACGGCTAGCGAGAT
ATCTCAGGACCGCTTCATCCTGACGGTGGGGTCTGAGGTGGGGGGCTGCC
TGGTGGATGGTCTGGGCGATGGGGTGCTCCTGCAGTCCCCCGGGCAGGAC
ATGGACGTGCTGAGGACAACCAGCTTCGGCCTGCTGCAGATATCTCAGGA
CCGCTTCATCCTGACGGTGGGGTCTGAGGTGGGGGGCTGCCTGGTGGATG
GTCTGGGCGATGGGGTGCTCCTGCAGTCCCCCGGGCAGGACATGGACGTG
CTGAGGACAACCAGCTTCGGCCTGCTGCAGGGCTCCCGCATGCGCAACAC
CAAGACGGAGTACGTGTCCTGCCCCAGCTGTGGGCGGACCCTTTTCGACC
TCCAGGAGGGCTCCCGCATGCGCAACACCAAGACGGAGTACGTGTCCTGC
CCCAGCTGTGGGCGGACCCTTTTCGACCTCCAGGAGGTGACGGCACAAAT
CCAGGAGAAGACGGGCCACCTGCCCGGGGTGTCCATTGCCATCATGGGCT
GCATCGTCAACGGTGTGGGGGAGATGGCGGACGCGGACTTTGGATACGTG
GGCGGCGCGCCGGGCAAGGTGACGGCACAAATCCAGGAGAAGACGGGCCA
CCTGCCCGGGGTGTCCATTGCCATCATGGGCTGCATCGTCAACGGTGTGG
GGGAGATGGCGGACGCGGACTTTGGATACGTGGGCGGCGCGCCGGGCAAG
GTGGACTTGTACGTAGGCAAGGAGGTGGTGCAGAGGGCCATCCCCAACGA
GGAGGCCTGCGACGCCCTTGTCAACCTCATCAAGGAGCATGGCCGTTGGG
TGGACAAGGAGGAGGTGGAAGAGGAGGGGGCCGCCGCCGTGGACTTGTAC
GTAGGCAAGGAGGTGGTGCAGAGGGCCATCCCCAACGAGGAGGCCTGCGA
CGCCCTTGTCAACCTCATCAAGGAGCATGGCCGTTGGGTGGACAAGGAGG
AGGTGGAAGAGGAGGGGGCCGCCGCC
back to top