mRNA_S-ischiensis_contig11.2013.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2013.1
Unique NamemRNA_S-ischiensis_contig11.2013.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:436019..437443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size514
Cds size402
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2013.1prot_S-ischiensis_contig11.2013.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 436092..437404 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815576.323513-UTR-S-ischiensis_contig11:436018..4360911622815576.323513-UTR-S-ischiensis_contig11:436018..436091Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 436019..436091 +
1695739780.7987072-UTR-S-ischiensis_contig11:436018..4360911695739780.7987072-UTR-S-ischiensis_contig11:436018..436091Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 436019..436091 +
1622815576.3588796-UTR-S-ischiensis_contig11:437404..4374431622815576.3588796-UTR-S-ischiensis_contig11:437404..437443Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 437405..437443 +
1695739780.8314862-UTR-S-ischiensis_contig11:437404..4374431695739780.8314862-UTR-S-ischiensis_contig11:437404..437443Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 437405..437443 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815576.3357828-CDS-S-ischiensis_contig11:436091..4361801622815576.3357828-CDS-S-ischiensis_contig11:436091..436180Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 436092..436180 +
1695739780.8073637-CDS-S-ischiensis_contig11:436091..4361801695739780.8073637-CDS-S-ischiensis_contig11:436091..436180Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 436092..436180 +
1622815576.3488405-CDS-S-ischiensis_contig11:437091..4374041622815576.3488405-CDS-S-ischiensis_contig11:437091..437404Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 437092..437404 +
1695739780.8171253-CDS-S-ischiensis_contig11:437091..4374041695739780.8171253-CDS-S-ischiensis_contig11:437091..437404Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 437092..437404 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2013.1

>prot_S-ischiensis_contig11.2013.1 ID=prot_S-ischiensis_contig11.2013.1|Name=mRNA_S-ischiensis_contig11.2013.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=134bp
MSGREEAAAAVSLAMSLCVVGLAVLVEVWRPSFWDVLQPLGYVFSLRLIL
WLLGDVVVAGLARACLNDVNLLRAAGIQPPSEQQLREQRREEEPDRAWLS
PHPSGYMLRASRVLVRALVLGHVVYVLVVTSGA*
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mRNA from alignment at S-ischiensis_contig11:436019..437443+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2013.1 ID=mRNA_S-ischiensis_contig11.2013.1|Name=mRNA_S-ischiensis_contig11.2013.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1425bp|location=Sequence derived from alignment at S-ischiensis_contig11:436019..437443+ (Schizocladia ischiensis KU_0333)
TCGGTTGCCGCAGGGTGGGGCTGCGGCAGTGGCGGCCGGGGGGGCACCGG
CAGGGGCAGCGGCGGCTACGCGGATGTCGGGGCGAGAGGAGGCTGCTGCA
GCGGTGTCCTTGGCGATGTCCCTGTGTGTGGTTGGGTTGGCTGTTCTGGT
GGAGGTTTGGAGGTGCGAATCTGCCGGGTGTGTTATGACGTGTACAGTAG
ACCCTTGGACAGTGGCCCTTGGGGCGTGTTTTCCGCGTTCACGCACGCCC
CCACTAACTTGTGCTTCAAAGTAGGACAGCATCTGCTATCCAACCCCTAA
AAAACCGCCATGCTCTGGAGCTCTGAGTGCAGCATGTACCGAAAATCGCG
GCAACCTGGAGACTGCTCTCCGCCACGTAGGTGGCGTACAGTAGCATGCG
GTACAACTCCACGCGATGTCTGTACCTGTGCCATGCGCGAGCGAGAGAGT
CTATCGTCTTTACGCAGTGCTCCGCGGGCGAACCACTCAAGCCACAAGTA
ACGCGCCCACCACAGACCACACAGCTACCGGCACTGCTTCTCCAAGTCTG
GAGCTCCACTCAGGGATCTACTTTCCCTTTTACCCCGAGATCCATATAGT
CATAGGGTTTTAATGTGTACATCCAATTTAGCAGGGGTAAAAGGGTTAAG
TCAGTAAGCTCAATCTTTCCGGCCGACTCACACAGTGTTAAACAAGCAAG
GTATAATTTAGGCGGCCTGCCTAAAAAATCGGTTTTGGGCCCAAAGCCGC
CTCACCTTTGTGGCGCCGTAGGCGGCACCCCCGCCTAATGTTTTGGCTCC
TCCACCCACAAACTAGTGCCCGGGAGCCCCCATTTTGGGAGGACGAGGCC
AAATGTTTCGCCCTGCGGGGCCATTTGTGGGTACTTCACCGCCCAGGCTC
GGACATCGGTCAGGCGCCGCCCCACTTCGCGAAGCCGATGGGCGGCGGGC
GCCCGGGCCACCCAGTTTCTTCCGGGTGTTTGTTTACCGCTGGACTCACA
TCCTCTTCCCACGCCCCCAACCCACCCCCCCACCGCGTCCGCCGCCAACA
CCTGCCAACCCCCCCCCGGCTAGACCCAGCTTCTGGGACGTCCTGCAACC
CCTGGGCTACGTCTTCTCGCTGCGCCTAATCCTCTGGCTCCTGGGCGACG
TGGTGGTGGCAGGCCTGGCGCGGGCGTGCCTCAACGACGTCAACCTCCTG
CGGGCCGCCGGGATACAGCCCCCGAGTGAGCAGCAGCTAAGGGAGCAGCG
GCGGGAGGAGGAGCCGGACCGGGCGTGGCTGAGCCCCCACCCCAGCGGGT
ACATGCTGCGGGCGTCGCGGGTGCTGGTCCGCGCGCTGGTGCTGGGGCAC
GTGGTGTATGTGCTGGTGGTGACGAGTGGGGCGTGAGGGTCGCCGCCGAG
CGGGCGCCAGTCCGCCCCGCCTCCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:436019..437443+

>mRNA_S-ischiensis_contig11.2013.1 ID=mRNA_S-ischiensis_contig11.2013.1|Name=mRNA_S-ischiensis_contig11.2013.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=804bp|location=Sequence derived from alignment at S-ischiensis_contig11:436019..437443+ (Schizocladia ischiensis KU_0333)
ATGTCGGGGCGAGAGGAGGCTGCTGCAGCGGTGTCCTTGGCGATGTCCCT
GTGTGTGGTTGGGTTGGCTGTTCTGGTGGAGGTTTGGAGATGTCGGGGCG
AGAGGAGGCTGCTGCAGCGGTGTCCTTGGCGATGTCCCTGTGTGTGGTTG
GGTTGGCTGTTCTGGTGGAGGTTTGGAGACCCAGCTTCTGGGACGTCCTG
CAACCCCTGGGCTACGTCTTCTCGCTGCGCCTAATCCTCTGGCTCCTGGG
CGACGTGGTGGTGGCAGGCCTGGCGCGGGCGTGCCTCAACGACGTCAACC
TCCTGCGGGCCGCCGGGATACAGCCCCCGAGTGAGCAGCAGCTAAGGGAG
CAGCGGCGGGAGGAGGAGCCGGACCGGGCGTGGCTGAGCCCCCACCCCAG
CGGGTACATGCTGCGGGCGTCGCGGGTGCTGGTCCGCGCGCTGGTGCTGG
GGCACGTGGTGTATGTGCTGGTGGTGACGAGTGGGGCGTGAACCCAGCTT
CTGGGACGTCCTGCAACCCCTGGGCTACGTCTTCTCGCTGCGCCTAATCC
TCTGGCTCCTGGGCGACGTGGTGGTGGCAGGCCTGGCGCGGGCGTGCCTC
AACGACGTCAACCTCCTGCGGGCCGCCGGGATACAGCCCCCGAGTGAGCA
GCAGCTAAGGGAGCAGCGGCGGGAGGAGGAGCCGGACCGGGCGTGGCTGA
GCCCCCACCCCAGCGGGTACATGCTGCGGGCGTCGCGGGTGCTGGTCCGC
GCGCTGGTGCTGGGGCACGTGGTGTATGTGCTGGTGGTGACGAGTGGGGC
GTGA
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