mRNA_S-ischiensis_contig11.1994.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.1994.1
Unique NamemRNA_S-ischiensis_contig11.1994.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.1994.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:293607..294538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size932
Cds size492
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.1994.1prot_S-ischiensis_contig11.1994.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 293681..294172 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.9045022-UTR-S-ischiensis_contig11:293606..2936801622815581.9045022-UTR-S-ischiensis_contig11:293606..293680Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 293607..293680 +
1695739783.9599557-UTR-S-ischiensis_contig11:293606..2936801695739783.9599557-UTR-S-ischiensis_contig11:293606..293680Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 293607..293680 +
1622815581.9324005-UTR-S-ischiensis_contig11:294172..2945381622815581.9324005-UTR-S-ischiensis_contig11:294172..294538Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 294173..294538 +
1695739783.9815571-UTR-S-ischiensis_contig11:294172..2945381695739783.9815571-UTR-S-ischiensis_contig11:294172..294538Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 294173..294538 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.9188652-CDS-S-ischiensis_contig11:293680..2941721622815581.9188652-CDS-S-ischiensis_contig11:293680..294172Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 293681..294172 +
1695739783.9697154-CDS-S-ischiensis_contig11:293680..2941721695739783.9697154-CDS-S-ischiensis_contig11:293680..294172Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 293681..294172 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.1994.1

>prot_S-ischiensis_contig11.1994.1 ID=prot_S-ischiensis_contig11.1994.1|Name=mRNA_S-ischiensis_contig11.1994.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=164bp
MSESPLSACSRQTQHCPVPFQFHAATAGQGHQAPPPSLPTRTALSVKSWR
TEESALSGLRSTGSSHRLNTYEYLLVYLLYSTAIDLPRAQTKGTETDLHT
HTHTHTHICTHPTTSPPHATGEVTRKMSLTSAPGAAVAKLLPITSPAHAH
QPASNASQASGRR*
back to top

mRNA from alignment at S-ischiensis_contig11:293607..294538+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.1994.1 ID=mRNA_S-ischiensis_contig11.1994.1|Name=mRNA_S-ischiensis_contig11.1994.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=932bp|location=Sequence derived from alignment at S-ischiensis_contig11:293607..294538+ (Schizocladia ischiensis KU_0333)
CCAAAAAACCAGTTCATTCTTATCGCACGACATGACAGGGGGGAAGGCTG
ACGCGGTTCCAGCAGCCGCCCGTCATGTCTGAGTCACCGCTCTCAGCTTG
TAGCCGACAAACACAACACTGCCCTGTCCCCTTCCAGTTTCACGCGGCCA
CGGCGGGGCAGGGGCACCAGGCCCCCCCCCCCTCCCTCCCGACACGCACC
GCTTTGAGCGTTAAAAGCTGGCGGACGGAGGAGAGTGCTCTAAGCGGTCT
GCGGAGCACTGGGAGCTCACATCGCCTAAATACATACGAGTACCTGCTCG
TGTACCTACTCTACAGCACAGCAATAGATCTGCCACGAGCACAGACAAAA
GGCACGGAAACGGACCTGCACACACACACACACACACACACACACATATG
CACACATCCCACAACTAGCCCCCCGCATGCCACAGGGGAGGTCACGAGAA
AAATGTCCCTCACGTCAGCGCCCGGGGCCGCGGTAGCCAAACTGCTACCA
ATAACTTCGCCAGCCCATGCCCACCAGCCAGCCAGCAACGCCAGCCAAGC
CAGCGGGCGACGGTGAGCTCACGGCAGGCCTGCGTGTGTGGCATGCAGGC
ATGCAGCCACACGCAGGGCCCGGCACAGGTTCAAGACGGCCGGGCACGGG
GCGGGGCCGCCCATCCCTGCCCGACCGGTTACTACTGTACGGGTAGAGTA
CTTCTGTCAGTACTTGCGGGCGCCCCTGGGGGCTGGAGGGCGCGTTCCAG
GCACCCACGTTCGCCATGCATGTATGCACCACGCGAAGACCTCGCGGACC
TCACAGATCAACAACGTGTCAAGCCAAGCCAAGGGCCCTGGCCCTTTCGA
TGATCGCATGGGGCGGGGGTGGAGGTGGGGGGAGGCTTAGGGCAATAGAA
AACGATGAGCCGTTTGTCGCCCTAAGCCCTTT
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig11:293607..294538+

>mRNA_S-ischiensis_contig11.1994.1 ID=mRNA_S-ischiensis_contig11.1994.1|Name=mRNA_S-ischiensis_contig11.1994.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=984bp|location=Sequence derived from alignment at S-ischiensis_contig11:293607..294538+ (Schizocladia ischiensis KU_0333)
ATGTCTGAGTCACCGCTCTCAGCTTGTAGCCGACAAACACAACACTGCCC
TGTCCCCTTCCAGTTTCACGCGGCCACGGCGGGGCAGGGGCACCAGGCCC
CCCCCCCCTCCCTCCCGACACGCACCGCTTTGAGCGTTAAAAGCTGGCGG
ACGGAGGAGAGTGCTCTAAGCGGTCTGCGGAGCACTGGGAGCTCACATCG
CCTAAATACATACGAGTACCTGCTCGTGTACCTACTCTACAGCACAGCAA
TAGATCTGCCACGAGCACAGACAAAAGGCACGGAAACGGACCTGCACACA
CACACACACACACACACACACATATGCACACATCCCACAACTAGCCCCCC
GCATGCCACAGGGGAGGTCACGAGAAAAATGTCCCTCACGTCAGCGCCCG
GGGCCGCGGTAGCCAAACTGCTACCAATAACTTCGCCAGCCCATGCCCAC
CAGCCAGCCAGCAACGCCAGCCAAGCCAGCGGGCGACGGTGAATGTCTGA
GTCACCGCTCTCAGCTTGTAGCCGACAAACACAACACTGCCCTGTCCCCT
TCCAGTTTCACGCGGCCACGGCGGGGCAGGGGCACCAGGCCCCCCCCCCC
TCCCTCCCGACACGCACCGCTTTGAGCGTTAAAAGCTGGCGGACGGAGGA
GAGTGCTCTAAGCGGTCTGCGGAGCACTGGGAGCTCACATCGCCTAAATA
CATACGAGTACCTGCTCGTGTACCTACTCTACAGCACAGCAATAGATCTG
CCACGAGCACAGACAAAAGGCACGGAAACGGACCTGCACACACACACACA
CACACACACACACATATGCACACATCCCACAACTAGCCCCCCGCATGCCA
CAGGGGAGGTCACGAGAAAAATGTCCCTCACGTCAGCGCCCGGGGCCGCG
GTAGCCAAACTGCTACCAATAACTTCGCCAGCCCATGCCCACCAGCCAGC
CAGCAACGCCAGCCAAGCCAGCGGGCGACGGTGA
back to top