mRNA_S-ischiensis_contig11.1982.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.1982.1
Unique NamemRNA_S-ischiensis_contig11.1982.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.1982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:206753..207554 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_005470.1
Hectar predicted targeting categoryother localisation
Exons2
Model size368
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815575.878021-CDS-S-ischiensis_contig11:206752..2069551622815575.878021-CDS-S-ischiensis_contig11:206752..206955Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 206753..206955 +
1695739780.1793945-CDS-S-ischiensis_contig11:206752..2069551695739780.1793945-CDS-S-ischiensis_contig11:206752..206955Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 206753..206955 +
1622815575.8953888-CDS-S-ischiensis_contig11:207389..2075521622815575.8953888-CDS-S-ischiensis_contig11:207389..207552Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 207390..207552 +
1695739780.1905124-CDS-S-ischiensis_contig11:207389..2075521695739780.1905124-CDS-S-ischiensis_contig11:207389..207552Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 207390..207552 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.1982.1prot_S-ischiensis_contig11.1982.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 206753..207552 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.1982.1

>prot_S-ischiensis_contig11.1982.1 ID=prot_S-ischiensis_contig11.1982.1|Name=mRNA_S-ischiensis_contig11.1982.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=122bp
GSDGGELASSEGPCEGCRLVVHLVGEERVVCRDGGTACANDEDPLPFAAA
VAWAWGVARQGLVHAVVSSCDPYMLQTAQDAIQHQLQGPSPEPQQGSEGA
MFGQQHVETGPAGETRAAVIEH
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mRNA from alignment at S-ischiensis_contig11:206753..207554+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.1982.1 ID=mRNA_S-ischiensis_contig11.1982.1|Name=mRNA_S-ischiensis_contig11.1982.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=802bp|location=Sequence derived from alignment at S-ischiensis_contig11:206753..207554+ (Schizocladia ischiensis KU_0333)
GGCAGTGACGGAGGAGAACTTGCCAGCAGTGAGGGGCCTTGTGAGGGCTG
TAGGCTTGTGGTGCACCTTGTCGGCGAGGAGAGGGTTGTGTGCCGTGACG
GGGGGACGGCGTGCGCCAATGACGAGGACCCCCTCCCTTTTGCGGCCGCG
GTGGCGTGGGCGTGGGGTGTTGCACGGCAGGGGCTCGTGCACGCGGTGGT
GAGGTGTGTGTGTGGGGGGGGGGGGAATCGGCAGTGGCCCTGGAGTGCTC
ACGCCACCTGCAGGTCGTGTAGCTTTACGGTGCCTGCTGCTTGTCCGGGC
AGGTGTGCTCTGCTAATAACAAGTTGTTGGCATGCCTCCGGGTTTGGGGT
CAGCGCTCAATTCACACGTGTGGACTCGACAGCGAGTGCTGCGCTGTACT
CATACTCGTACATTATGTCTGCGACACCCTGTTGGGTGTTCTCTCTGCCA
GTCGATGTCACCGCCAATCCCACCAAAAGGGCATGGCATCACCGCCCTTG
GAAGCCAGTGTTGCACAGGCTGTTTTTTTTCCTTTCGTTCTCAACCTTCC
CCGGAGTAGGTACGCAGATGCTTGTGAGTGCCGCGATGACCTACTTAGTG
CCCGCTCGCCTGCTGGCCTGCCCTGAACCTGCGGCAGCTCCTGCGACCCC
TACATGCTCCAAACCGCGCAAGACGCCATACAGCACCAACTGCAAGGCCC
CAGCCCCGAGCCCCAGCAAGGGAGCGAGGGTGCCATGTTTGGACAGCAGC
ACGTGGAGACGGGGCCCGCAGGCGAAACCAGGGCGGCTGTCATTGAACAT
GA
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:206753..207554+

>mRNA_S-ischiensis_contig11.1982.1 ID=mRNA_S-ischiensis_contig11.1982.1|Name=mRNA_S-ischiensis_contig11.1982.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=732bp|location=Sequence derived from alignment at S-ischiensis_contig11:206753..207554+ (Schizocladia ischiensis KU_0333)
GGCAGTGACGGAGGAGAACTTGCCAGCAGTGAGGGGCCTTGTGAGGGCTG
TAGGCTTGTGGTGCACCTTGTCGGCGAGGAGAGGGTTGTGTGCCGTGACG
GGGGGACGGCGTGCGCCAATGACGAGGACCCCCTCCCTTTTGCGGCCGCG
GTGGCGTGGGCGTGGGGTGTTGCACGGCAGGGGCTCGTGCACGCGGTGGT
GAGGGCAGTGACGGAGGAGAACTTGCCAGCAGTGAGGGGCCTTGTGAGGG
CTGTAGGCTTGTGGTGCACCTTGTCGGCGAGGAGAGGGTTGTGTGCCGTG
ACGGGGGGACGGCGTGCGCCAATGACGAGGACCCCCTCCCTTTTGCGGCC
GCGGTGGCGTGGGCGTGGGGTGTTGCACGGCAGGGGCTCGTGCACGCGGT
GGTGAGCTCCTGCGACCCCTACATGCTCCAAACCGCGCAAGACGCCATAC
AGCACCAACTGCAAGGCCCCAGCCCCGAGCCCCAGCAAGGGAGCGAGGGT
GCCATGTTTGGACAGCAGCACGTGGAGACGGGGCCCGCAGGCGAAACCAG
GGCGGCTGTCATTGAACATCTCCTGCGACCCCTACATGCTCCAAACCGCG
CAAGACGCCATACAGCACCAACTGCAAGGCCCCAGCCCCGAGCCCCAGCA
AGGGAGCGAGGGTGCCATGTTTGGACAGCAGCACGTGGAGACGGGGCCCG
CAGGCGAAACCAGGGCGGCTGTCATTGAACAT
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