mRNA_S-ischiensis_contig11.1981.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.1981.1
Unique NamemRNA_S-ischiensis_contig11.1981.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.1981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:205968..206599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size633
Cds size627
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.7667477-UTR-S-ischiensis_contig11:205967..2059721622815581.7667477-UTR-S-ischiensis_contig11:205967..205972Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 205968..205972 +
1695739783.9038925-UTR-S-ischiensis_contig11:205967..2059721695739783.9038925-UTR-S-ischiensis_contig11:205967..205972Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 205968..205972 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.7769687-CDS-S-ischiensis_contig11:205972..2065991622815581.7769687-CDS-S-ischiensis_contig11:205972..206599Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 205973..206599 +
1695739783.9137406-CDS-S-ischiensis_contig11:205972..2065991695739783.9137406-CDS-S-ischiensis_contig11:205972..206599Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 205973..206599 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.1981.1prot_S-ischiensis_contig11.1981.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 205973..206599 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.1981.1

>prot_S-ischiensis_contig11.1981.1 ID=prot_S-ischiensis_contig11.1981.1|Name=mRNA_S-ischiensis_contig11.1981.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=209bp
MNASKFLPLGTAAAAVTVVVASSHPSSPVRGHIDRWAVAKRRQTLKQSFI
KAVLQLPQHRAALPEPLVHIQRAPLVLLVGSDRYTTDLAADHLSQGLGAS
LLVLPANGSLGPGALASHIERQLLHLGGHADIHLPSQVAARAVVAAGATG
AEAREPLVAAEAAAIPGAAGAVPITAATRLYLRITQGLLGPSELDHVALR
ALGDALDVL
back to top

mRNA from alignment at S-ischiensis_contig11:205968..206599+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.1981.1 ID=mRNA_S-ischiensis_contig11.1981.1|Name=mRNA_S-ischiensis_contig11.1981.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=632bp|location=Sequence derived from alignment at S-ischiensis_contig11:205968..206599+ (Schizocladia ischiensis KU_0333)
CCGGGATGAACGCAAGTAAGTTTTTGCCATTGGGGACTGCAGCTGCTGCC
GTCACAGTAGTGGTGGCCAGCTCGCATCCGTCTTCGCCCGTTCGGGGGCA
CATTGACCGCTGGGCAGTGGCAAAAAGAAGACAGACGCTGAAGCAGAGCT
TCATCAAAGCAGTTCTACAGCTCCCCCAACACCGGGCTGCTCTGCCCGAG
CCACTTGTCCACATCCAAAGGGCCCCACTTGTCCTACTGGTGGGTTCGGA
TCGTTACACTACCGACCTTGCGGCCGACCACCTCTCACAGGGACTGGGCG
CGAGCTTGCTGGTCCTGCCTGCCAATGGCTCGCTCGGGCCCGGGGCTCTG
GCCTCTCACATAGAGCGGCAGCTTCTCCACCTGGGGGGGCATGCAGACAT
CCACCTACCGTCGCAGGTCGCAGCGCGTGCGGTTGTGGCTGCGGGTGCAA
CTGGGGCAGAAGCACGGGAGCCATTGGTGGCAGCCGAGGCAGCGGCAATA
CCAGGGGCTGCTGGAGCCGTCCCCATCACGGCTGCGACCCGTCTCTATTT
GCGCATCACACAGGGCCTGCTCGGGCCCTCCGAGCTGGACCACGTCGCGT
TACGGGCCCTTGGCGATGCCCTGGATGTCCTC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig11:205968..206599+

>mRNA_S-ischiensis_contig11.1981.1 ID=mRNA_S-ischiensis_contig11.1981.1|Name=mRNA_S-ischiensis_contig11.1981.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1254bp|location=Sequence derived from alignment at S-ischiensis_contig11:205968..206599+ (Schizocladia ischiensis KU_0333)
ATGAACGCAAGTAAGTTTTTGCCATTGGGGACTGCAGCTGCTGCCGTCAC
AGTAGTGGTGGCCAGCTCGCATCCGTCTTCGCCCGTTCGGGGGCACATTG
ACCGCTGGGCAGTGGCAAAAAGAAGACAGACGCTGAAGCAGAGCTTCATC
AAAGCAGTTCTACAGCTCCCCCAACACCGGGCTGCTCTGCCCGAGCCACT
TGTCCACATCCAAAGGGCCCCACTTGTCCTACTGGTGGGTTCGGATCGTT
ACACTACCGACCTTGCGGCCGACCACCTCTCACAGGGACTGGGCGCGAGC
TTGCTGGTCCTGCCTGCCAATGGCTCGCTCGGGCCCGGGGCTCTGGCCTC
TCACATAGAGCGGCAGCTTCTCCACCTGGGGGGGCATGCAGACATCCACC
TACCGTCGCAGGTCGCAGCGCGTGCGGTTGTGGCTGCGGGTGCAACTGGG
GCAGAAGCACGGGAGCCATTGGTGGCAGCCGAGGCAGCGGCAATACCAGG
GGCTGCTGGAGCCGTCCCCATCACGGCTGCGACCCGTCTCTATTTGCGCA
TCACACAGGGCCTGCTCGGGCCCTCCGAGCTGGACCACGTCGCGTTACGG
GCCCTTGGCGATGCCCTGGATGTCCTCATGAACGCAAGTAAGTTTTTGCC
ATTGGGGACTGCAGCTGCTGCCGTCACAGTAGTGGTGGCCAGCTCGCATC
CGTCTTCGCCCGTTCGGGGGCACATTGACCGCTGGGCAGTGGCAAAAAGA
AGACAGACGCTGAAGCAGAGCTTCATCAAAGCAGTTCTACAGCTCCCCCA
ACACCGGGCTGCTCTGCCCGAGCCACTTGTCCACATCCAAAGGGCCCCAC
TTGTCCTACTGGTGGGTTCGGATCGTTACACTACCGACCTTGCGGCCGAC
CACCTCTCACAGGGACTGGGCGCGAGCTTGCTGGTCCTGCCTGCCAATGG
CTCGCTCGGGCCCGGGGCTCTGGCCTCTCACATAGAGCGGCAGCTTCTCC
ACCTGGGGGGGCATGCAGACATCCACCTACCGTCGCAGGTCGCAGCGCGT
GCGGTTGTGGCTGCGGGTGCAACTGGGGCAGAAGCACGGGAGCCATTGGT
GGCAGCCGAGGCAGCGGCAATACCAGGGGCTGCTGGAGCCGTCCCCATCA
CGGCTGCGACCCGTCTCTATTTGCGCATCACACAGGGCCTGCTCGGGCCC
TCCGAGCTGGACCACGTCGCGTTACGGGCCCTTGGCGATGCCCTGGATGT
CCTC
back to top