mRNA_S-ischiensis_contig11.1977.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.1977.1
Unique NamemRNA_S-ischiensis_contig11.1977.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.1977.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:165946..167982 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size584
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.1977.1prot_S-ischiensis_contig11.1977.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 166008..167802 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815575.7841694-UTR-S-ischiensis_contig11:165945..1660071622815575.7841694-UTR-S-ischiensis_contig11:165945..166007Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 165946..166007 +
1695739780.1211243-UTR-S-ischiensis_contig11:165945..1660071695739780.1211243-UTR-S-ischiensis_contig11:165945..166007Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 165946..166007 +
1622815575.8394048-UTR-S-ischiensis_contig11:167802..1679821622815575.8394048-UTR-S-ischiensis_contig11:167802..167982Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 167803..167982 +
1695739780.1704113-UTR-S-ischiensis_contig11:167802..1679821695739780.1704113-UTR-S-ischiensis_contig11:167802..167982Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 167803..167982 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815575.7971451-CDS-S-ischiensis_contig11:166007..1660221622815575.7971451-CDS-S-ischiensis_contig11:166007..166022Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 166008..166022 +
1695739780.136934-CDS-S-ischiensis_contig11:166007..1660221695739780.136934-CDS-S-ischiensis_contig11:166007..166022Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 166008..166022 +
1622815575.8106234-CDS-S-ischiensis_contig11:167074..1671881622815575.8106234-CDS-S-ischiensis_contig11:167074..167188Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 167075..167188 +
1695739780.1485033-CDS-S-ischiensis_contig11:167074..1671881695739780.1485033-CDS-S-ischiensis_contig11:167074..167188Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 167075..167188 +
1622815575.8254507-CDS-S-ischiensis_contig11:167589..1678021622815575.8254507-CDS-S-ischiensis_contig11:167589..167802Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 167590..167802 +
1695739780.1588583-CDS-S-ischiensis_contig11:167589..1678021695739780.1588583-CDS-S-ischiensis_contig11:167589..167802Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 167590..167802 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.1977.1

>prot_S-ischiensis_contig11.1977.1 ID=prot_S-ischiensis_contig11.1977.1|Name=mRNA_S-ischiensis_contig11.1977.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=114bp
MDDIASMIQTIFAQIAAGSGSGGGGNEKELKQALATVHELARRAAEMLKN
ERSHKDAMLLQKDAVISEKELQIEDLTERLEALQVAQDSQAPDALQGAEG
GGGGGGGSSQFEA*
back to top

mRNA from alignment at S-ischiensis_contig11:165946..167982+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.1977.1 ID=mRNA_S-ischiensis_contig11.1977.1|Name=mRNA_S-ischiensis_contig11.1977.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2037bp|location=Sequence derived from alignment at S-ischiensis_contig11:165946..167982+ (Schizocladia ischiensis KU_0333)
AGCAGGGGCTGGCGGATCGCGTGCAGAAACTGGAGGAGCAGTTGGCGGAG
GCTGGCGGCGCCATGGATGATATCGCGGTGAGGGCGGGTGGGGCGGGGGG
CGGGAGCGTGGGGGAAGTGCTCGGAGGGTACTTTGTACAGGTAACCCTGC
TCCGTCTCGACCGAGGCGCGTGGTCAATGGTCTCGGGCCTACGGCAAGCA
CAACATGAGTACACATTTTATATACGGTTGGCGGACTGCCCCCCAGGACA
TGCATCACGACTCTGCTCACACTCTGTAGGATGTGCGGATGGCTTGGTGT
GCCCCCAAGCTGGCAGTGTTCTGCCTCCCCCCGTCTCCATTTGCCTTTGC
AGATGGCAGAGCCCTCTCCTCGCGGCCTGTTTTCCGGCGAAGAATGGAAA
GGCTTACCAAAGCTCTAGAGTAGTGAAGGCAGCGCCCCCAGTATCACCAA
CAACGACAGGAAACACCGGGGATTTCCTCCACGCTTAGCAGTGGTGGAAT
ATCGAATATTAGTAATATATCAAAACGTTATATCGAATATCTATTATATC
GAACAAATATAATGATAGCCGCATATATCGACGCTATATCGACTGATGTA
TTCCTATCAATAGCTTTGGAGCGTCAGCGACGGCCTGGACAAGCCTCCCA
TGGAAGAAACTACTTGGTTTTAGTATGGGCTATAATATCACTATGTCGAT
ATATCGATACACTTTGAAGTATATAACAAAATCGTTATCTTCATATATTT
GTCGTTGTATACAACAAATTGGGTCGATATTCCATCGCTGCCGGTTAGAG
CCCCCCGGATGTGGACGGTGGTTGTGCTTGGAAGTGCTTGGCGTTGGAAG
TGCTTAGAAGTGCTCGGGAGTACCTACTTCCTAGTACCTACTACGGAAGG
GCTTTACAGTAGTGACGTGGCCCGCACCTCGCCCCGTGTTGTTCCTGTTA
ATACTAGTACTTGGAGATAGTAGGTACTGTGTACAGTGGCGTGTGGCTGT
TGCACAGCAACTTGTGACCATTCCCTGCCCCGCTCCCCGTCCTCCCCGTC
TCCGCCCGCTCCCCACCTCCTCTCCCCCCGCCCCCCCCCCGCCTCCGGCC
ATCCCCCACCTCCTTCCCTGCCCCCTCAGTCGATGATCCAGACGATTTTC
GCTCAGATTGCCGCGGGGAGTGGGAGCGGGGGCGGCGGGAACGAGAAGGA
GCTCAAGCAGGCTCTGGCGACTGTGCATGAGCTGGCCAGGAGGGTAAGGA
CCCCCCCCCCCCGCCGCCGCCGCCGCCGTGGCGAGATTGTGCATCCCTCC
CTTGTGTTGCGTGTGGCGGCAAGGGAGGGAAAGGCTCCGGATTGCCAAGA
AATACGAATAGACATGCAGTGCCGTACAAAGGAGATGGGGCTACTGAGTA
GGTACCTCGTGATGTCCCTGTTGCCTTGCTGTAGGTGTCCATGTGGAGCT
GCCGGAAGTAGCAATGCGTGCGCGGTGTGTCGACGTATTAGCGTGCTGGC
AAAGGCAAGCTTGCCCCTGGAGGAGGCACAGCGCAGGGTTTCCAGTGCAC
TGTGGTCAATGGTCTCGGGACTACGGTAAGTATAACGTGCGTACATATAT
ATATATATGCTCATACGTTTTTTTTGTTTGGCTGGATCGCGCAGGCGGCG
GAGATGCTCAAGAACGAGCGGTCTCACAAGGACGCCATGCTGTTACAGAA
GGACGCAGTCATCTCCGAGAAGGAACTGCAGATAGAGGACCTCACAGAGC
GCCTGGAAGCCTTGCAAGTCGCCCAGGACTCTCAGGCCCCGGACGCCTTG
CAGGGGGCGGAGGGGGGCGGCGGCGGCGGCGGCGGCTCAAGTCAATTTGA
GGCCTGAGTCGGAAGCGCCGAAATGTCGTCGGTGATCACTTACTTGTACT
GTGTTCGTTTGCTACTGTGGCGTGCTGTGCCGTTTCTATTTTCAGTACTT
GTCACCAGACTGCGACGGCCTGCAGGCATCTCCGAGTCTCGTTTATCTAC
TACCGTGCTTTACAGTAGACTTTTGGCGTCGGTCGGT
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig11:165946..167982+

>mRNA_S-ischiensis_contig11.1977.1 ID=mRNA_S-ischiensis_contig11.1977.1|Name=mRNA_S-ischiensis_contig11.1977.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=684bp|location=Sequence derived from alignment at S-ischiensis_contig11:165946..167982+ (Schizocladia ischiensis KU_0333)
ATGGATGATATCGCGATGGATGATATCGCGTCGATGATCCAGACGATTTT
CGCTCAGATTGCCGCGGGGAGTGGGAGCGGGGGCGGCGGGAACGAGAAGG
AGCTCAAGCAGGCTCTGGCGACTGTGCATGAGCTGGCCAGGAGGTCGATG
ATCCAGACGATTTTCGCTCAGATTGCCGCGGGGAGTGGGAGCGGGGGCGG
CGGGAACGAGAAGGAGCTCAAGCAGGCTCTGGCGACTGTGCATGAGCTGG
CCAGGAGGGCGGCGGAGATGCTCAAGAACGAGCGGTCTCACAAGGACGCC
ATGCTGTTACAGAAGGACGCAGTCATCTCCGAGAAGGAACTGCAGATAGA
GGACCTCACAGAGCGCCTGGAAGCCTTGCAAGTCGCCCAGGACTCTCAGG
CCCCGGACGCCTTGCAGGGGGCGGAGGGGGGCGGCGGCGGCGGCGGCGGC
TCAAGTCAATTTGAGGCCTGAGCGGCGGAGATGCTCAAGAACGAGCGGTC
TCACAAGGACGCCATGCTGTTACAGAAGGACGCAGTCATCTCCGAGAAGG
AACTGCAGATAGAGGACCTCACAGAGCGCCTGGAAGCCTTGCAAGTCGCC
CAGGACTCTCAGGCCCCGGACGCCTTGCAGGGGGCGGAGGGGGGCGGCGG
CGGCGGCGGCGGCTCAAGTCAATTTGAGGCCTGA
back to top