mRNA_S-ischiensis_contig11.1974.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.1974.1
Unique NamemRNA_S-ischiensis_contig11.1974.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.1974.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:155685..156322 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size638
Cds size342
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.7258086-UTR-S-ischiensis_contig11:155684..1559801622815581.7258086-UTR-S-ischiensis_contig11:155684..155980Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 155685..155980 +
1695739783.8800194-UTR-S-ischiensis_contig11:155684..1559801695739783.8800194-UTR-S-ischiensis_contig11:155684..155980Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 155685..155980 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.7361264-CDS-S-ischiensis_contig11:155980..1563221622815581.7361264-CDS-S-ischiensis_contig11:155980..156322Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 155981..156322 +
1695739783.8924994-CDS-S-ischiensis_contig11:155980..1563221695739783.8924994-CDS-S-ischiensis_contig11:155980..156322Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 155981..156322 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.1974.1prot_S-ischiensis_contig11.1974.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 155981..156322 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.1974.1

>prot_S-ischiensis_contig11.1974.1 ID=prot_S-ischiensis_contig11.1974.1|Name=mRNA_S-ischiensis_contig11.1974.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=114bp
MHAGPSAPVDGRKGCDPLARYSRPCTRASGGGVGQAGPAIVACSNNCTRT
PLLQYFEAPNACPSARVPLHTAHPAALGKNRVNCPKLKLFVRGGGRGGVL
CVPRGPVPGPWGS*
back to top

mRNA from alignment at S-ischiensis_contig11:155685..156322+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.1974.1 ID=mRNA_S-ischiensis_contig11.1974.1|Name=mRNA_S-ischiensis_contig11.1974.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=638bp|location=Sequence derived from alignment at S-ischiensis_contig11:155685..156322+ (Schizocladia ischiensis KU_0333)
CACTGTACTTCCAAGTGTAGTATGTTCAAACCGCCACGAAAACTGTCCGG
CGGGGGGGGGGTCATCCAGGTCGGACCTGTGTTTGGGTTCCCGGGTCCAA
GTCGTCCAGGGTGAATCCATCCAGTAGGCGAGAAACATTGCCCGGAAAAC
TCGGTATGATGGGGGGGCAACATGTCTCAGAGTCTCCCCGACCAAAATAC
AGTACAATAACAGTCACAGCAGCACCGTTAACTAAAAGGTCCCGCTGCCC
CAGGTAGCGGCCATGGGAGCGTGAACCTCAAAGCTGGCCAGGCCTGATGC
ACGCTGGGCCTAGTGCCCCGGTGGATGGACGCAAAGGCTGTGACCCGCTC
GCAAGATACAGCCGCCCCTGCACTCGAGCCTCTGGCGGCGGTGTCGGCCA
AGCGGGCCCGGCGATCGTCGCTTGCTCAAACAATTGTACTCGTACTCCAC
TGCTACAGTACTTCGAAGCACCTAATGCATGCCCGAGCGCCCGAGTTCCT
TTACATACGGCACACCCGGCGGCTCTAGGTAAAAATAGAGTCAACTGTCC
TAAACTCAAGTTGTTTGTGCGGGGGGGGGGACGGGGGGGTGTCCTGTGTG
TCCCGCGCGGTCCAGTCCCTGGCCCCTGGGGGAGTTGA
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig11:155685..156322+

>mRNA_S-ischiensis_contig11.1974.1 ID=mRNA_S-ischiensis_contig11.1974.1|Name=mRNA_S-ischiensis_contig11.1974.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=684bp|location=Sequence derived from alignment at S-ischiensis_contig11:155685..156322+ (Schizocladia ischiensis KU_0333)
ATGCACGCTGGGCCTAGTGCCCCGGTGGATGGACGCAAAGGCTGTGACCC
GCTCGCAAGATACAGCCGCCCCTGCACTCGAGCCTCTGGCGGCGGTGTCG
GCCAAGCGGGCCCGGCGATCGTCGCTTGCTCAAACAATTGTACTCGTACT
CCACTGCTACAGTACTTCGAAGCACCTAATGCATGCCCGAGCGCCCGAGT
TCCTTTACATACGGCACACCCGGCGGCTCTAGGTAAAAATAGAGTCAACT
GTCCTAAACTCAAGTTGTTTGTGCGGGGGGGGGGACGGGGGGGTGTCCTG
TGTGTCCCGCGCGGTCCAGTCCCTGGCCCCTGGGGGAGTTGAATGCACGC
TGGGCCTAGTGCCCCGGTGGATGGACGCAAAGGCTGTGACCCGCTCGCAA
GATACAGCCGCCCCTGCACTCGAGCCTCTGGCGGCGGTGTCGGCCAAGCG
GGCCCGGCGATCGTCGCTTGCTCAAACAATTGTACTCGTACTCCACTGCT
ACAGTACTTCGAAGCACCTAATGCATGCCCGAGCGCCCGAGTTCCTTTAC
ATACGGCACACCCGGCGGCTCTAGGTAAAAATAGAGTCAACTGTCCTAAA
CTCAAGTTGTTTGTGCGGGGGGGGGGACGGGGGGGTGTCCTGTGTGTCCC
GCGCGGTCCAGTCCCTGGCCCCTGGGGGAGTTGA
back to top