mRNA_S-ischiensis_contig11.1966.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.1966.1
Unique NamemRNA_S-ischiensis_contig11.1966.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.1966.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:92314..93154 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815575.683218-CDS-S-ischiensis_contig11:92313..925861622815575.683218-CDS-S-ischiensis_contig11:92313..92586Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 92314..92586 -
1695739780.0219135-CDS-S-ischiensis_contig11:92313..925861695739780.0219135-CDS-S-ischiensis_contig11:92313..92586Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 92314..92586 -
1622815575.6978421-CDS-S-ischiensis_contig11:93121..931541622815575.6978421-CDS-S-ischiensis_contig11:93121..93154Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 93122..93154 -
1695739780.031219-CDS-S-ischiensis_contig11:93121..931541695739780.031219-CDS-S-ischiensis_contig11:93121..93154Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 93122..93154 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.1966.1prot_S-ischiensis_contig11.1966.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 92314..93154 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.1966.1

>prot_S-ischiensis_contig11.1966.1 ID=prot_S-ischiensis_contig11.1966.1|Name=mRNA_S-ischiensis_contig11.1966.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=102bp
LGVLEGGVHAKAPAPAQPSPPSPPPPPPPPGPAAATTAGRGREPRATATG
GFELETTGTPRRPASDSETGSADSESPQRGSGVGCPHGRRRRKGGVRGVT
TP
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mRNA from alignment at S-ischiensis_contig11:92314..93154-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.1966.1 ID=mRNA_S-ischiensis_contig11.1966.1|Name=mRNA_S-ischiensis_contig11.1966.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=841bp|location=Sequence derived from alignment at S-ischiensis_contig11:92314..93154- (Schizocladia ischiensis KU_0333)
CTGGGGGTGCTGGAAGGGGGGGTGCACGCAAAGGTGAGCTACAGCAGCGA
AGCGCACCTCATGCCTACTCGTACTACTTCTACTTCGTACTTCGTACCAG
CACTTCCAAAGCACTTGAAAGAATCTGTAGCTATGGCACAGATGTAGAAG
TGCTTTGAATACCACGTAGTACCCGAGTACAGCACAACGGTACTTTAAGA
CGTGCCACACTTCGCACTGGCGGCAGCGTGGGTGCTACTGTACACTTCCG
GAAGTACCGGCATAGCAGGGATGCGAGGCCAACGGCCGAAATGCTACCCT
GCGCCCTGCAGGGGTGGTACTGATTGGTGGCCCAGCACGGAGTATACTGC
GCCGACGGGCGGTGACATGCGCAGAGAGGACACGGGGTAATAACTCTGCC
CGACATTACTACATACTTGCACCATGTGTATACATTTATTTCCCTTTGCC
CTTGCGGATGTAGCCCCTGAGCGCTTTCCCCTCCGCCTGCGCAGCTTTCC
TGTTTTTTCCCCTTGTACATTTACTTGCGCTACGTATTGTACCCCGGCCG
TACGTCACACCCTTGCAGGCACCGGCACCGGCGCAGCCGTCTCCTCCGAG
CCCACCGCCGCCACCTCCTCCTCCTGGGCCCGCGGCAGCCACCACGGCCG
GAAGAGGGAGAGAGCCCAGGGCAACAGCGACGGGTGGATTCGAGCTGGAG
ACCACAGGAACCCCAAGGCGGCCCGCGAGCGACTCAGAGACCGGGTCGGC
GGACTCGGAGTCTCCTCAGAGAGGGAGCGGGGTGGGTTGTCCACACGGCC
GGCGGCGCCGGAAGGGGGGGGTGAGGGGGGTGACGACGCCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:92314..93154-

>mRNA_S-ischiensis_contig11.1966.1 ID=mRNA_S-ischiensis_contig11.1966.1|Name=mRNA_S-ischiensis_contig11.1966.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=612bp|location=Sequence derived from alignment at S-ischiensis_contig11:92314..93154- (Schizocladia ischiensis KU_0333)
CTGGGGGTGCTGGAAGGGGGGGTGCACGCAAAGCTGGGGGTGCTGGAAGG
GGGGGTGCACGCAAAGGCACCGGCACCGGCGCAGCCGTCTCCTCCGAGCC
CACCGCCGCCACCTCCTCCTCCTGGGCCCGCGGCAGCCACCACGGCCGGA
AGAGGGAGAGAGCCCAGGGCAACAGCGACGGGTGGATTCGAGCTGGAGAC
CACAGGAACCCCAAGGCGGCCCGCGAGCGACTCAGAGACCGGGTCGGCGG
ACTCGGAGTCTCCTCAGAGAGGGAGCGGGGTGGGTTGTCCACACGGCCGG
CGGCGCCGGAAGGGGGGGGTGAGGGGGGTGACGACGCCCGCACCGGCACC
GGCGCAGCCGTCTCCTCCGAGCCCACCGCCGCCACCTCCTCCTCCTGGGC
CCGCGGCAGCCACCACGGCCGGAAGAGGGAGAGAGCCCAGGGCAACAGCG
ACGGGTGGATTCGAGCTGGAGACCACAGGAACCCCAAGGCGGCCCGCGAG
CGACTCAGAGACCGGGTCGGCGGACTCGGAGTCTCCTCAGAGAGGGAGCG
GGGTGGGTTGTCCACACGGCCGGCGGCGCCGGAAGGGGGGGGTGAGGGGG
GTGACGACGCCC
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