mRNA_S-ischiensis_contig11.1954.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.1954.1
Unique NamemRNA_S-ischiensis_contig11.1954.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.1954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:9172..9618 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size447
Cds size426
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.453346-UTR-S-ischiensis_contig11:9171..91921622815581.453346-UTR-S-ischiensis_contig11:9171..9192Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 9172..9192 +
1695739783.7766075-UTR-S-ischiensis_contig11:9171..91921695739783.7766075-UTR-S-ischiensis_contig11:9171..9192Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 9172..9192 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.4682171-CDS-S-ischiensis_contig11:9192..96181622815581.4682171-CDS-S-ischiensis_contig11:9192..9618Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 9193..9618 +
1695739783.7886686-CDS-S-ischiensis_contig11:9192..96181695739783.7886686-CDS-S-ischiensis_contig11:9192..9618Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 9193..9618 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.1954.1prot_S-ischiensis_contig11.1954.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 9193..9618 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.1954.1

>prot_S-ischiensis_contig11.1954.1 ID=prot_S-ischiensis_contig11.1954.1|Name=mRNA_S-ischiensis_contig11.1954.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=142bp
MQRAWRRNANRVLGPPGGQHAAAAATTAAAAAPCPPPHRPAAVPDRADYV
QEEEKEGAAAADAAGLPMGAEKDKEEEQGTAEVAAAVQQEGEGMNTRGRK
HRRLSRLPRAPTTVALPRASSSSPAPSLGRSGGGGGGGGDDN
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mRNA from alignment at S-ischiensis_contig11:9172..9618+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.1954.1 ID=mRNA_S-ischiensis_contig11.1954.1|Name=mRNA_S-ischiensis_contig11.1954.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=447bp|location=Sequence derived from alignment at S-ischiensis_contig11:9172..9618+ (Schizocladia ischiensis KU_0333)
GTTGGACGCGGGAGGGCACGAATGCAGCGAGCGTGGAGGAGGAATGCAAA
CAGAGTGCTGGGTCCGCCCGGGGGACAACATGCTGCCGCCGCCGCCACCA
CCGCCGCTGCCGCGGCCCCCTGCCCCCCCCCGCACCGGCCCGCTGCGGTC
CCCGACCGCGCCGACTATGTGCAGGAGGAGGAGAAGGAGGGGGCAGCAGC
GGCAGACGCAGCAGGGCTGCCGATGGGAGCGGAGAAGGACAAGGAGGAGG
AGCAGGGCACGGCGGAAGTGGCAGCAGCAGTGCAGCAGGAGGGGGAGGGA
ATGAACACCAGGGGGCGCAAGCACCGGCGGCTGTCACGACTTCCGAGGGC
TCCCACAACCGTTGCCCTGCCGCGTGCATCGTCATCTTCCCCAGCGCCAA
GCCTCGGCCGCAGTGGCGGCGGCGGCGGCGGCGGCGGCGACGACAAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:9172..9618+

>mRNA_S-ischiensis_contig11.1954.1 ID=mRNA_S-ischiensis_contig11.1954.1|Name=mRNA_S-ischiensis_contig11.1954.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=852bp|location=Sequence derived from alignment at S-ischiensis_contig11:9172..9618+ (Schizocladia ischiensis KU_0333)
ATGCAGCGAGCGTGGAGGAGGAATGCAAACAGAGTGCTGGGTCCGCCCGG
GGGACAACATGCTGCCGCCGCCGCCACCACCGCCGCTGCCGCGGCCCCCT
GCCCCCCCCCGCACCGGCCCGCTGCGGTCCCCGACCGCGCCGACTATGTG
CAGGAGGAGGAGAAGGAGGGGGCAGCAGCGGCAGACGCAGCAGGGCTGCC
GATGGGAGCGGAGAAGGACAAGGAGGAGGAGCAGGGCACGGCGGAAGTGG
CAGCAGCAGTGCAGCAGGAGGGGGAGGGAATGAACACCAGGGGGCGCAAG
CACCGGCGGCTGTCACGACTTCCGAGGGCTCCCACAACCGTTGCCCTGCC
GCGTGCATCGTCATCTTCCCCAGCGCCAAGCCTCGGCCGCAGTGGCGGCG
GCGGCGGCGGCGGCGGCGACGACAACATGCAGCGAGCGTGGAGGAGGAAT
GCAAACAGAGTGCTGGGTCCGCCCGGGGGACAACATGCTGCCGCCGCCGC
CACCACCGCCGCTGCCGCGGCCCCCTGCCCCCCCCCGCACCGGCCCGCTG
CGGTCCCCGACCGCGCCGACTATGTGCAGGAGGAGGAGAAGGAGGGGGCA
GCAGCGGCAGACGCAGCAGGGCTGCCGATGGGAGCGGAGAAGGACAAGGA
GGAGGAGCAGGGCACGGCGGAAGTGGCAGCAGCAGTGCAGCAGGAGGGGG
AGGGAATGAACACCAGGGGGCGCAAGCACCGGCGGCTGTCACGACTTCCG
AGGGCTCCCACAACCGTTGCCCTGCCGCGTGCATCGTCATCTTCCCCAGC
GCCAAGCCTCGGCCGCAGTGGCGGCGGCGGCGGCGGCGGCGGCGACGACA
AC
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