mRNA_S-ischiensis_contig11.1952.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.1952.1
Unique NamemRNA_S-ischiensis_contig11.1952.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.1952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:6280..7053 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size774
Cds size768
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.3739188-UTR-S-ischiensis_contig11:6279..62851622815581.3739188-UTR-S-ischiensis_contig11:6279..6285Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 6280..6285 +
1695739783.7434611-UTR-S-ischiensis_contig11:6279..62851695739783.7434611-UTR-S-ischiensis_contig11:6279..6285Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 6280..6285 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.385347-CDS-S-ischiensis_contig11:6285..70531622815581.385347-CDS-S-ischiensis_contig11:6285..7053Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 6286..7053 +
1695739783.7522118-CDS-S-ischiensis_contig11:6285..70531695739783.7522118-CDS-S-ischiensis_contig11:6285..7053Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 6286..7053 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.1952.1prot_S-ischiensis_contig11.1952.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 6286..7053 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.1952.1

>prot_S-ischiensis_contig11.1952.1 ID=prot_S-ischiensis_contig11.1952.1|Name=mRNA_S-ischiensis_contig11.1952.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=256bp
MAAGAGAGAGAGRAARRLRHTWTEEQDCKLWRLMKSSPPGFTWSHIAARF
PELPARVRKEPSQGIGGHWKVLQSRLEQKHALVYPAAAAARAAEAAARGA
EAAAAVAAGQAADAAARAAEATAGAGRFARAAAVLTAGPGASPAPMQPVA
VTANAGSTAAVVAAAAPAGATGLTYTGKEPPDLIVAQDRQQQGQQHCDHE
QHQHQHQHQHQHLLLPPQQQEKQPPPLLPRLSPPPPQGQHVQHHCHRHRH
LPPPPT
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mRNA from alignment at S-ischiensis_contig11:6280..7053+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.1952.1 ID=mRNA_S-ischiensis_contig11.1952.1|Name=mRNA_S-ischiensis_contig11.1952.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=774bp|location=Sequence derived from alignment at S-ischiensis_contig11:6280..7053+ (Schizocladia ischiensis KU_0333)
GCGGGAATGGCGGCCGGGGCCGGTGCCGGAGCGGGGGCGGGAAGAGCCGC
CCGCCGTTTACGACACACGTGGACAGAGGAACAGGACTGCAAGCTTTGGA
GGCTCATGAAAAGCTCTCCTCCAGGCTTTACGTGGTCTCACATCGCGGCA
CGCTTCCCTGAACTACCCGCGCGTGTGCGGAAGGAGCCTAGTCAGGGTAT
CGGGGGCCACTGGAAGGTGCTGCAATCGAGGCTGGAGCAGAAACACGCGC
TCGTGTACCCGGCGGCGGCGGCGGCGCGGGCAGCAGAGGCGGCGGCAAGG
GGAGCAGAGGCAGCGGCTGCGGTGGCAGCGGGACAGGCAGCGGACGCCGC
GGCAAGGGCAGCAGAGGCAACGGCAGGGGCAGGGAGGTTTGCCAGGGCGG
CGGCAGTGCTGACTGCAGGACCAGGCGCGAGCCCGGCCCCCATGCAGCCG
GTGGCGGTCACGGCCAATGCAGGTTCCACGGCAGCGGTGGTGGCGGCGGC
GGCGCCGGCGGGTGCTACTGGTCTGACGTACACCGGGAAGGAACCCCCGG
ACTTGATCGTGGCCCAGGATCGGCAGCAACAAGGACAGCAGCACTGCGAC
CACGAGCAGCACCAGCACCAGCACCAGCACCAGCACCAGCACCTGCTGCT
GCCACCGCAACAACAGGAGAAGCAGCCACCGCCTCTGCTGCCGCGGCTCT
CGCCGCCGCCGCCGCAGGGCCAGCACGTGCAGCACCATTGCCACCGGCAT
CGGCACCTGCCACCGCCGCCAACA
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:6280..7053+

>mRNA_S-ischiensis_contig11.1952.1 ID=mRNA_S-ischiensis_contig11.1952.1|Name=mRNA_S-ischiensis_contig11.1952.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1536bp|location=Sequence derived from alignment at S-ischiensis_contig11:6280..7053+ (Schizocladia ischiensis KU_0333)
ATGGCGGCCGGGGCCGGTGCCGGAGCGGGGGCGGGAAGAGCCGCCCGCCG
TTTACGACACACGTGGACAGAGGAACAGGACTGCAAGCTTTGGAGGCTCA
TGAAAAGCTCTCCTCCAGGCTTTACGTGGTCTCACATCGCGGCACGCTTC
CCTGAACTACCCGCGCGTGTGCGGAAGGAGCCTAGTCAGGGTATCGGGGG
CCACTGGAAGGTGCTGCAATCGAGGCTGGAGCAGAAACACGCGCTCGTGT
ACCCGGCGGCGGCGGCGGCGCGGGCAGCAGAGGCGGCGGCAAGGGGAGCA
GAGGCAGCGGCTGCGGTGGCAGCGGGACAGGCAGCGGACGCCGCGGCAAG
GGCAGCAGAGGCAACGGCAGGGGCAGGGAGGTTTGCCAGGGCGGCGGCAG
TGCTGACTGCAGGACCAGGCGCGAGCCCGGCCCCCATGCAGCCGGTGGCG
GTCACGGCCAATGCAGGTTCCACGGCAGCGGTGGTGGCGGCGGCGGCGCC
GGCGGGTGCTACTGGTCTGACGTACACCGGGAAGGAACCCCCGGACTTGA
TCGTGGCCCAGGATCGGCAGCAACAAGGACAGCAGCACTGCGACCACGAG
CAGCACCAGCACCAGCACCAGCACCAGCACCAGCACCTGCTGCTGCCACC
GCAACAACAGGAGAAGCAGCCACCGCCTCTGCTGCCGCGGCTCTCGCCGC
CGCCGCCGCAGGGCCAGCACGTGCAGCACCATTGCCACCGGCATCGGCAC
CTGCCACCGCCGCCAACAATGGCGGCCGGGGCCGGTGCCGGAGCGGGGGC
GGGAAGAGCCGCCCGCCGTTTACGACACACGTGGACAGAGGAACAGGACT
GCAAGCTTTGGAGGCTCATGAAAAGCTCTCCTCCAGGCTTTACGTGGTCT
CACATCGCGGCACGCTTCCCTGAACTACCCGCGCGTGTGCGGAAGGAGCC
TAGTCAGGGTATCGGGGGCCACTGGAAGGTGCTGCAATCGAGGCTGGAGC
AGAAACACGCGCTCGTGTACCCGGCGGCGGCGGCGGCGCGGGCAGCAGAG
GCGGCGGCAAGGGGAGCAGAGGCAGCGGCTGCGGTGGCAGCGGGACAGGC
AGCGGACGCCGCGGCAAGGGCAGCAGAGGCAACGGCAGGGGCAGGGAGGT
TTGCCAGGGCGGCGGCAGTGCTGACTGCAGGACCAGGCGCGAGCCCGGCC
CCCATGCAGCCGGTGGCGGTCACGGCCAATGCAGGTTCCACGGCAGCGGT
GGTGGCGGCGGCGGCGCCGGCGGGTGCTACTGGTCTGACGTACACCGGGA
AGGAACCCCCGGACTTGATCGTGGCCCAGGATCGGCAGCAACAAGGACAG
CAGCACTGCGACCACGAGCAGCACCAGCACCAGCACCAGCACCAGCACCA
GCACCTGCTGCTGCCACCGCAACAACAGGAGAAGCAGCCACCGCCTCTGC
TGCCGCGGCTCTCGCCGCCGCCGCCGCAGGGCCAGCACGTGCAGCACCAT
TGCCACCGGCATCGGCACCTGCCACCGCCGCCAACA
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