mRNA_S-ischiensis_contig11.1951.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.1951.1
Unique NamemRNA_S-ischiensis_contig11.1951.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.1951.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:2861..4164 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size730
Cds size729
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815575.4401894-CDS-S-ischiensis_contig11:2860..30971622815575.4401894-CDS-S-ischiensis_contig11:2860..3097Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2861..3097 +
1695739779.9013078-CDS-S-ischiensis_contig11:2860..30971695739779.9013078-CDS-S-ischiensis_contig11:2860..3097Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2861..3097 +
1622815575.451119-CDS-S-ischiensis_contig11:3672..41641622815575.451119-CDS-S-ischiensis_contig11:3672..4164Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3673..4164 +
1695739779.9126139-CDS-S-ischiensis_contig11:3672..41641695739779.9126139-CDS-S-ischiensis_contig11:3672..4164Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3673..4164 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.1951.1prot_S-ischiensis_contig11.1951.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 2861..4164 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.1951.1

>prot_S-ischiensis_contig11.1951.1 ID=prot_S-ischiensis_contig11.1951.1|Name=mRNA_S-ischiensis_contig11.1951.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=243bp
MGQPPRDARAAEELQRRPVDAPLSQGSAVLTSTVQRYGERMNPVIAAIIA
DNGYATGEPLARRLQAKAREVRDIQALLKDRETKLCMDGALEPLTGTAEA
TQRTLRLVQSRTPGPSGGRNEEVDPVLSAARGGARAASELLKCAEGICYE
ILYQHNNGHALLGDAVRWLIEMAHSRGGLPPGAADTVLARVASMPGSRPR
WAGPISAAGFGAGGGPSSGGPGGASGEEGATGGAGDDCSGHSG
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mRNA from alignment at S-ischiensis_contig11:2861..4164+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.1951.1 ID=mRNA_S-ischiensis_contig11.1951.1|Name=mRNA_S-ischiensis_contig11.1951.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1304bp|location=Sequence derived from alignment at S-ischiensis_contig11:2861..4164+ (Schizocladia ischiensis KU_0333)
ATGGGACAGCCTCCTAGAGACGCCCGCGCAGCAGAAGAGCTACAGCGCCG
CCCTGTGGACGCACCCTTGTCCCAAGGGTCTGCCGTGCTCACCAGCACGG
TCCAGCGCTACGGCGAACGTATGAATCCCGTGATCGCCGCCATCATAGCT
GACAACGGGTACGCCACCGGTGAGCCGCTGGCGAGGCGGCTCCAGGCAAA
GGCTCGGGAGGTTCGAGATATTCAGGCACTGCTCAAGGTGCGTTTTTTTA
TGTGGAAGGAAAAGAAGCGAGTGGGAAGAGAGGTGACCCTACTTTTTTGC
GGTTTCCGGGCCCCACCACAGATGCCCGTCCTTCACCCGCCTTCACTCGC
AGGGCAAATACGAAAAGAAAACCAAGGGGAACGGGGAAGGGGGCAGTGGG
GGGGGGGGAGGTCTCTTCTGCGACGAACGGGACACGCGGTGTGGGCACTT
GTCCAAACCGACTAACATGGCAATAAGTCATGCCTGTTAGGCGGGTAGCC
GGCGAATCTCGGTGTGTATAGGCATGTGCTTTCACTGCCTGGGCTACATG
GTTGTCCACGTCGCTGCAAAGTATGTCGCCTCGCCTCTAGAGTAGAGCCG
TGACACCGGCAAGTAATGCGGTTCTACTGCTAGCCGAACCTGACACTCAA
GGTTGGCGTGGTGGTCTCGGCGTATCTACGCAATAAATAACGTGCAATTT
GATGTTGAGCAGCGGCGACCTGGCCAGCAGGGGGCACAAGTACTCGAGTA
CTTGGACACTAAGCGTGGTTGTCGTCCTGGTTTGTGCCCTCCTCTGCCCT
TTGGCATTTCAGGATCGGGAGACAAAGCTCTGTATGGACGGAGCCCTCGA
ACCTCTAACAGGGACAGCCGAGGCCACCCAACGGACCTTACGTCTAGTCC
AAAGCCGGACCCCCGGGCCCAGCGGGGGGAGGAATGAGGAGGTGGATCCG
GTGCTTTCGGCGGCGAGGGGCGGGGCACGTGCGGCATCTGAGCTTCTCAA
ATGCGCCGAGGGCATATGCTACGAGATCCTATACCAGCACAACAATGGCC
ACGCCTTGTTGGGAGATGCCGTGAGGTGGCTCATAGAAATGGCCCATTCC
CGAGGGGGGCTGCCTCCAGGAGCCGCTGACACAGTCCTGGCACGAGTGGC
GAGCATGCCTGGCAGCCGCCCGCGGTGGGCGGGGCCGATTTCCGCCGCGG
GCTTTGGGGCAGGTGGCGGCCCCAGCAGTGGCGGCCCTGGGGGTGCTAGC
GGAGAAGAAGGCGCCACCGGCGGAGCTGGAGACGACTGCAGCGGTCACAG
CGGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:2861..4164+

>mRNA_S-ischiensis_contig11.1951.1 ID=mRNA_S-ischiensis_contig11.1951.1|Name=mRNA_S-ischiensis_contig11.1951.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1458bp|location=Sequence derived from alignment at S-ischiensis_contig11:2861..4164+ (Schizocladia ischiensis KU_0333)
ATGGGACAGCCTCCTAGAGACGCCCGCGCAGCAGAAGAGCTACAGCGCCG
CCCTGTGGACGCACCCTTGTCCCAAGGGTCTGCCGTGCTCACCAGCACGG
TCCAGCGCTACGGCGAACGTATGAATCCCGTGATCGCCGCCATCATAGCT
GACAACGGGTACGCCACCGGTGAGCCGCTGGCGAGGCGGCTCCAGGCAAA
GGCTCGGGAGGTTCGAGATATTCAGGCACTGCTCAAGATGGGACAGCCTC
CTAGAGACGCCCGCGCAGCAGAAGAGCTACAGCGCCGCCCTGTGGACGCA
CCCTTGTCCCAAGGGTCTGCCGTGCTCACCAGCACGGTCCAGCGCTACGG
CGAACGTATGAATCCCGTGATCGCCGCCATCATAGCTGACAACGGGTACG
CCACCGGTGAGCCGCTGGCGAGGCGGCTCCAGGCAAAGGCTCGGGAGGTT
CGAGATATTCAGGCACTGCTCAAGGATCGGGAGACAAAGCTCTGTATGGA
CGGAGCCCTCGAACCTCTAACAGGGACAGCCGAGGCCACCCAACGGACCT
TACGTCTAGTCCAAAGCCGGACCCCCGGGCCCAGCGGGGGGAGGAATGAG
GAGGTGGATCCGGTGCTTTCGGCGGCGAGGGGCGGGGCACGTGCGGCATC
TGAGCTTCTCAAATGCGCCGAGGGCATATGCTACGAGATCCTATACCAGC
ACAACAATGGCCACGCCTTGTTGGGAGATGCCGTGAGGTGGCTCATAGAA
ATGGCCCATTCCCGAGGGGGGCTGCCTCCAGGAGCCGCTGACACAGTCCT
GGCACGAGTGGCGAGCATGCCTGGCAGCCGCCCGCGGTGGGCGGGGCCGA
TTTCCGCCGCGGGCTTTGGGGCAGGTGGCGGCCCCAGCAGTGGCGGCCCT
GGGGGTGCTAGCGGAGAAGAAGGCGCCACCGGCGGAGCTGGAGACGACTG
CAGCGGTCACAGCGGAGATCGGGAGACAAAGCTCTGTATGGACGGAGCCC
TCGAACCTCTAACAGGGACAGCCGAGGCCACCCAACGGACCTTACGTCTA
GTCCAAAGCCGGACCCCCGGGCCCAGCGGGGGGAGGAATGAGGAGGTGGA
TCCGGTGCTTTCGGCGGCGAGGGGCGGGGCACGTGCGGCATCTGAGCTTC
TCAAATGCGCCGAGGGCATATGCTACGAGATCCTATACCAGCACAACAAT
GGCCACGCCTTGTTGGGAGATGCCGTGAGGTGGCTCATAGAAATGGCCCA
TTCCCGAGGGGGGCTGCCTCCAGGAGCCGCTGACACAGTCCTGGCACGAG
TGGCGAGCATGCCTGGCAGCCGCCCGCGGTGGGCGGGGCCGATTTCCGCC
GCGGGCTTTGGGGCAGGTGGCGGCCCCAGCAGTGGCGGCCCTGGGGGTGC
TAGCGGAGAAGAAGGCGCCACCGGCGGAGCTGGAGACGACTGCAGCGGTC
ACAGCGGA
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