mRNA_S-ischiensis_contig109.1936.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig109.1936.1
Unique NamemRNA_S-ischiensis_contig109.1936.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig109.1936.1 vs. uniprot
Match: D7FZ15_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ15_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 1.150e-9
Identity = 38/66 (57.58%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:   13 DDRAYERSLRARERMSERERAEQLAFNREKERQRAILTMFGKKHRSLVEKTQDREVERFLDAKVHI 210
            D+RAYER++R R+  +++ER+EQ AF RE+ERQ+A+  MFGKK+R+ VEK +DRE+ER LDA + I
Sbjct: 1034 DERAYERTVRDRQSFAQQERSEQEAFLRERERQKALHQMFGKKYRTPVEKCRDREMERLLDATIEI 1099
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BLAST of mRNA_S-ischiensis_contig109.1936.1 vs. uniprot
Match: A0A6H5KQ85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ85_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.160e-9
Identity = 38/66 (57.58%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:   13 DDRAYERSLRARERMSERERAEQLAFNREKERQRAILTMFGKKHRSLVEKTQDREVERFLDAKVHI 210
            D+RAYER++R R+  +++ER+EQ AF RE+ERQ+A+  MFGKK+R+ VEK +DRE+ER LDA + I
Sbjct: 1294 DERAYERTVRDRQSFAQQERSEQEAFLRERERQKALHQMFGKKYRTPVEKCRDREMERLLDATIEI 1359
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig109.1936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZ15_ECTSI1.150e-957.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQ85_9PHAE1.160e-957.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig109contigS-ischiensis_contig109:65560..69117 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1075
Cds size1074
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815573.5900557-CDS-S-ischiensis_contig109:65559..657001622815573.5900557-CDS-S-ischiensis_contig109:65559..65700Schizocladia ischiensis KU_0333CDSS-ischiensis_contig109 65560..65700 +
1695739778.8082485-CDS-S-ischiensis_contig109:65559..657001695739778.8082485-CDS-S-ischiensis_contig109:65559..65700Schizocladia ischiensis KU_0333CDSS-ischiensis_contig109 65560..65700 +
1622815573.6008985-CDS-S-ischiensis_contig109:68184..691171622815573.6008985-CDS-S-ischiensis_contig109:68184..69117Schizocladia ischiensis KU_0333CDSS-ischiensis_contig109 68185..69117 +
1695739778.8182912-CDS-S-ischiensis_contig109:68184..691171695739778.8182912-CDS-S-ischiensis_contig109:68184..69117Schizocladia ischiensis KU_0333CDSS-ischiensis_contig109 68185..69117 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig109.1936.1prot_S-ischiensis_contig109.1936.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig109 65560..69117 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig109.1936.1

>prot_S-ischiensis_contig109.1936.1 ID=prot_S-ischiensis_contig109.1936.1|Name=mRNA_S-ischiensis_contig109.1936.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=358bp
AADFDDRAYERSLRARERMSERERAEQLAFNREKERQRAILTMFGKKHRS
LVEKTQDREVERFLDAKVHIKANAKALKRMAPGLFPHVDQSLCTIRHGPA
SRATGKASKPLPATAASSTAAAAAAAVGAAAGAPPQSPPPSQAPAPHARR
PPTRTTRSMRSASSSSPTSSSSAATATPAATAPSTPSAATTTSSSSLQPG
AGAGEAASPGGASSDAAHASQADASQGQGPGSPPPAPATTAPAAAALAGV
VADAPPAPAAPPARGPAPVPAAIQQIDVSAENAPVLQDGYHDPVRCCVCT
AGQALAEGPPGLRAHVRSRAQVGPTSGPTGPGSGSGSGSAAAVVGPAAGA
AAVGAGPG
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mRNA from alignment at S-ischiensis_contig109:65560..69117+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig109.1936.1 ID=mRNA_S-ischiensis_contig109.1936.1|Name=mRNA_S-ischiensis_contig109.1936.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3558bp|location=Sequence derived from alignment at S-ischiensis_contig109:65560..69117+ (Schizocladia ischiensis KU_0333)
GCGGCGGACTTTGACGACCGCGCGTACGAGCGCAGCCTGCGCGCGCGCGA
GCGCATGTCGGAGAGGGAGCGGGCGGAGCAGCTTGCCTTCAACCGGGAGA
AGGAGCGACAGAGGGCCATACTCACCATGTTTGGGAAAAAGGTGAGCTGA
GCGGTGATATATCCTACCATAATCGTCAGATATATCTTGCCCCCCCGGGA
CAATTTTTGGGAGGCAGCATCTCACGGGTCGGTTCCGAATTGCCCTGAAA
TCCCTCGGGACTACGTCACGAACAGTTAAACTGGTAGGCCTTGCCACTTC
ACAACTCTAGCAATCTCCCTCCCGCCCCTGGCAAGCCAGGGTGGGAGGGA
GGGACCACCCCCCCGCGCATGGAGGGGGGGTGGTTGCGTCCATACCCCCC
CCCGCTCCTGACTCGTGAGAGTCAGGGCGGGGGGACCTGCCGGACCGAGA
TTCAGCAGAGGAGGGGGGTCCCCCGCCATGCCGGGGCATGGAGGGGGGAT
ATCCAAGGTCACCGTCTACCCTACCTACTCGGTCCAACCGCGAACACCAC
ACAGACACAAGAAAATATTGAACCGCAGCTCTAAGGTAGAACCAGTCGTG
ATCAGGACCCGGCCACTCTCTGACTAATTTCTCCGATGCGACACGATTTT
CGACGCTGATTTCGATGTTGATCGACGCATCAGATGCGTGCCTATCGAAC
GGGCAATTCAAATTTGGTCGCGCACGTGGTCAGCTCGGCATATTTGCAAT
TAACCGACGTAGGGAAAATCCAAAACATCGGAAAATATCGGTAAATGTCA
GTATATTATCGGAGTGCAACCACTTTTGAAGATGGTTTTGGAAAGCTGGT
GAGTAGTGGCATCGAATGGAACCATCTTTGGTGGGATCGTGGGTGTCGCA
TCAGAAAATATAGTCAAAATTCATCGACACCTCGGTCTAATACTTAAGTC
AAGACAAAACGGCGCAATCAACGCGCGAACCAAAACGAGTTGGAGGGAAC
AAGCTTCGCCAATCAATTCGTCTCACCAAGCCGAGGCGATTGCACCCTTC
AACCGAAAAAATCGGACGACTTCATGACATCTTGACTCTGCTAGGGGCTG
AGAGCCGTTAGCTGACCGTTATACGTAAAACCGGCTCTACAGCCGCACAT
GGTGCCCGAATCGAAAAATGTCACCAAGCACTCCGCTAGAGCTCCGCCGG
CCGATCACAATGAGCTAGACCGTCAGGCACGATTCGTTTTCAATCGAAAG
TTTGGGTCCTTGGCCACGGCGCGGTCTCACCCGAGGGATCCAGAAGCAAT
GTACTGTATGTAATCGCTTTCCGGCGGTTGCACTTTTTAAACTTTCGTAG
CTATGTGCATGCATGTCAGTGCGGGACATGAGTACATATACGAAGTACTT
GAAAATGGGTACATTAGTACATGCGTGAAAGTAGGTACTTCGAAGTACAG
TACTCCAGAGCGCACATCGTACCACATCACGTCACGCCACATACCATAAC
ATCACATCACATGCTGCACCGGCGCGGTCGAGGCTCGTGGTCAATGGTCC
TGGGACTACGGCAAGCTCTGTTTGATGTATGTTTCCACTGCTTACGAGTA
CCTGCAAAGTGTACAACGGCGCGTGGTCAATGGTATCGGGACTACGGCGA
GCACAACGTGAGTACATATATATATATATACCTGTACTCATATATATGTA
CTCATTGGCCTGTCTTGCGACATAACTTTGCGTGCATTTGCGACAGCCCC
GAGTCGAAACTTCGGATTTGCCCTCTGACAGGAGTACGTAGCTATTTTAG
CTACGGAAACTCGCATCCCAATTAGGCCGGGATGGAGCATGCCGAGTTTG
CACCGGCCAGGCCGCGCACTGGCCAAGCCCGGAATACCATTATGCCTTGG
CATCGGCAAGCCGGATGATGGGCTGCTCGTTATGGGCTGCTCGTTAGACT
GCGACAAGTCGGCGAGTACTTGAAAGTACAATGCTTATGAGTCTTTTCAC
AGAATTGCTCTTGGGCGCACCGGCATCCCAACGGTCACGTGAGGAACAAC
CGGGATGATTGATCCCGACCGCTAGATCACATATACTTGCAAGTATATAT
ATATACTCCAGTAGTACCTACACATACGTACGAATTGTATTGTTCTCTCC
GAGCTACTTACTTGGGATGTTTTGAAACCAGGTCTCCCAACTACTCGGGT
TCTTTGCAACTCATTCTTCTAGCTAGTTGGACATTTCGGACACACACACA
GTACAAGTACCTGGACTACGGCAAGCTCTGTTGGATGTGAGTGCTTCCGA
CACACACACCCCACCACGCCCCCTCCCTCCTGTCGCGTGTCGCCCTTGTG
TCGTTGGACATTTCGGACACACAAAGAAGTACTTCTGCAGTACTGAACCT
GGACTCCGGCAAGCTCTGTTGGATGTGAGTACTTCCGACACACACACCCC
ACCACAGCCCCTCCCTCCTGTTGCCTGTCACCCTGGTGTCGTTGGACAGT
TCGGACACGCATAGAAGTACTACGTAGTACCTCCAGGGACTACGGCAAGC
TCTGTTGGATGTGAGCACTTCCGACATACACCCCCACCACGCCCCTTCCC
CGTGTTCCTTCCTTCCCCTGAGCAGCACCGCAGCCTGGTGGAGAAGACAC
AGGACCGGGAAGTGGAGCGATTCCTGGACGCCAAAGTGCACATAAAGGCC
AACGCAAAGGCCCTCAAGCGAATGGCCCCCGGCCTCTTTCCCCACGTCGA
CCAGAGCCTCTGCACTATCCGGCACGGCCCGGCCTCACGGGCGACGGGGA
AGGCGTCCAAGCCGTTGCCAGCCACCGCGGCCTCCTCAACTGCCGCCGCC
GCCGCAGCTGCAGTAGGCGCTGCAGCAGGCGCCCCTCCGCAATCCCCTCC
ACCTTCGCAGGCGCCGGCGCCACACGCCCGCCGCCCACCCACCCGGACCA
CACGCTCCATGCGCTCCGCCTCCTCCTCCTCCCCCACCTCCTCCTCCTCT
GCTGCCACCGCCACCCCTGCTGCCACTGCCCCTTCCACCCCCTCCGCCGC
CACCACCACATCATCCTCGAGCCTCCAGCCTGGGGCGGGCGCGGGCGAAG
CGGCGTCGCCCGGCGGGGCCTCCTCGGACGCCGCACACGCCTCCCAAGCA
GATGCCTCCCAAGGACAAGGCCCGGGATCTCCTCCCCCTGCTCCAGCCAC
TACAGCCCCGGCCGCCGCGGCATTGGCAGGCGTTGTTGCGGACGCCCCCC
CGGCCCCCGCCGCCCCGCCGGCCCGGGGCCCGGCCCCGGTCCCCGCGGCG
ATCCAGCAGATAGACGTATCTGCAGAGAATGCGCCGGTGCTTCAGGACGG
GTACCACGACCCGGTGCGGTGCTGCGTGTGCACCGCGGGCCAGGCCCTGG
CGGAAGGGCCTCCGGGCCTGCGGGCCCACGTCCGGTCGCGGGCCCAGGTG
GGCCCAACCTCCGGGCCCACAGGGCCGGGCTCGGGCTCGGGCTCGGGCTC
TGCTGCTGCTGTGGTTGGTCCTGCGGCCGGCGCTGCCGCGGTGGGGGCGG
GGCCTGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig109:65560..69117+

>mRNA_S-ischiensis_contig109.1936.1 ID=mRNA_S-ischiensis_contig109.1936.1|Name=mRNA_S-ischiensis_contig109.1936.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2148bp|location=Sequence derived from alignment at S-ischiensis_contig109:65560..69117+ (Schizocladia ischiensis KU_0333)
GCGGCGGACTTTGACGACCGCGCGTACGAGCGCAGCCTGCGCGCGCGCGA
GCGCATGTCGGAGAGGGAGCGGGCGGAGCAGCTTGCCTTCAACCGGGAGA
AGGAGCGACAGAGGGCCATACTCACCATGTTTGGGAAAAAGGCGGCGGAC
TTTGACGACCGCGCGTACGAGCGCAGCCTGCGCGCGCGCGAGCGCATGTC
GGAGAGGGAGCGGGCGGAGCAGCTTGCCTTCAACCGGGAGAAGGAGCGAC
AGAGGGCCATACTCACCATGTTTGGGAAAAAGCACCGCAGCCTGGTGGAG
AAGACACAGGACCGGGAAGTGGAGCGATTCCTGGACGCCAAAGTGCACAT
AAAGGCCAACGCAAAGGCCCTCAAGCGAATGGCCCCCGGCCTCTTTCCCC
ACGTCGACCAGAGCCTCTGCACTATCCGGCACGGCCCGGCCTCACGGGCG
ACGGGGAAGGCGTCCAAGCCGTTGCCAGCCACCGCGGCCTCCTCAACTGC
CGCCGCCGCCGCAGCTGCAGTAGGCGCTGCAGCAGGCGCCCCTCCGCAAT
CCCCTCCACCTTCGCAGGCGCCGGCGCCACACGCCCGCCGCCCACCCACC
CGGACCACACGCTCCATGCGCTCCGCCTCCTCCTCCTCCCCCACCTCCTC
CTCCTCTGCTGCCACCGCCACCCCTGCTGCCACTGCCCCTTCCACCCCCT
CCGCCGCCACCACCACATCATCCTCGAGCCTCCAGCCTGGGGCGGGCGCG
GGCGAAGCGGCGTCGCCCGGCGGGGCCTCCTCGGACGCCGCACACGCCTC
CCAAGCAGATGCCTCCCAAGGACAAGGCCCGGGATCTCCTCCCCCTGCTC
CAGCCACTACAGCCCCGGCCGCCGCGGCATTGGCAGGCGTTGTTGCGGAC
GCCCCCCCGGCCCCCGCCGCCCCGCCGGCCCGGGGCCCGGCCCCGGTCCC
CGCGGCGATCCAGCAGATAGACGTATCTGCAGAGAATGCGCCGGTGCTTC
AGGACGGGTACCACGACCCGGTGCGGTGCTGCGTGTGCACCGCGGGCCAG
GCCCTGGCGGAAGGGCCTCCGGGCCTGCGGGCCCACGTCCGGTCGCGGGC
CCAGGTGGGCCCAACCTCCGGGCCCACAGGGCCGGGCTCGGGCTCGGGCT
CGGGCTCTGCTGCTGCTGTGGTTGGTCCTGCGGCCGGCGCTGCCGCGGTG
GGGGCGGGGCCTGGGCACCGCAGCCTGGTGGAGAAGACACAGGACCGGGA
AGTGGAGCGATTCCTGGACGCCAAAGTGCACATAAAGGCCAACGCAAAGG
CCCTCAAGCGAATGGCCCCCGGCCTCTTTCCCCACGTCGACCAGAGCCTC
TGCACTATCCGGCACGGCCCGGCCTCACGGGCGACGGGGAAGGCGTCCAA
GCCGTTGCCAGCCACCGCGGCCTCCTCAACTGCCGCCGCCGCCGCAGCTG
CAGTAGGCGCTGCAGCAGGCGCCCCTCCGCAATCCCCTCCACCTTCGCAG
GCGCCGGCGCCACACGCCCGCCGCCCACCCACCCGGACCACACGCTCCAT
GCGCTCCGCCTCCTCCTCCTCCCCCACCTCCTCCTCCTCTGCTGCCACCG
CCACCCCTGCTGCCACTGCCCCTTCCACCCCCTCCGCCGCCACCACCACA
TCATCCTCGAGCCTCCAGCCTGGGGCGGGCGCGGGCGAAGCGGCGTCGCC
CGGCGGGGCCTCCTCGGACGCCGCACACGCCTCCCAAGCAGATGCCTCCC
AAGGACAAGGCCCGGGATCTCCTCCCCCTGCTCCAGCCACTACAGCCCCG
GCCGCCGCGGCATTGGCAGGCGTTGTTGCGGACGCCCCCCCGGCCCCCGC
CGCCCCGCCGGCCCGGGGCCCGGCCCCGGTCCCCGCGGCGATCCAGCAGA
TAGACGTATCTGCAGAGAATGCGCCGGTGCTTCAGGACGGGTACCACGAC
CCGGTGCGGTGCTGCGTGTGCACCGCGGGCCAGGCCCTGGCGGAAGGGCC
TCCGGGCCTGCGGGCCCACGTCCGGTCGCGGGCCCAGGTGGGCCCAACCT
CCGGGCCCACAGGGCCGGGCTCGGGCTCGGGCTCGGGCTCTGCTGCTGCT
GTGGTTGGTCCTGCGGCCGGCGCTGCCGCGGTGGGGGCGGGGCCTGGG
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