mRNA_S-ischiensis_contig108.1922.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig108.1922.1
Unique NamemRNA_S-ischiensis_contig108.1922.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig108.1922.1 vs. uniprot
Match: A0A7S4ID32_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4ID32_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.280e-24
Identity = 88/259 (33.98%), Postives = 123/259 (47.49%), Query Frame = 2 
Query:  188 MELGWGLELRFLDSFPVARLRQVLDLVVLVADRSRIYNVVHPVQGNYAWTAGIKQVMIEGWNAILPEEFINGLRINVGLD-----------LSGTSRQAYDVLAAATAELHADHRDGLWTRLFLETAGTPGETSTPPVPHNTNRESWEHAAMAAGFHGGELLTLLF------GEGAETVTPGR---------------TYTMGDMRDNLLDHPRAERCSDDVEDLVYLASTLNL---LAAEQDAEGRVSSITLHDSDEL 859
            ME G G+EL  LD+F +  L QV  L+ L+A+  R     + +  + +W A I+QVM EGWNAILP ++++GL   +G++           L GT+ QA++V +A    L   H DG WTRL LE           P P N NR+SWE AA   GF+   L   L          A++V  GR                 ++ ++R   L+        +DVEDL+YLA +  +   L  E D  G V   TL D  EL
Sbjct:    7 MEPGDGVELTILDNFGIEHLPQVYRLLALIAEAGRTRTASNYIYDDESWIAAIRQVMKEGWNAILPADYVSGLCAALGIEEEEKEALVDSKLRGTT-QAFEVFSAVYGALWEAHADGFWTRLLLENV-----PKVMPEPSNPNRDSWEMAAAHDGFNVERLYRYLVPGDFRDSPPADSVKSGRRIRGAAAAAEDLRRPVVSVSELRAAYLNFSPGACGVEDVEDLIYLAQSYGMIKELVLEDD--GTVRRFTLRDPREL 257
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BLAST of mRNA_S-ischiensis_contig108.1922.1 vs. uniprot
Match: A0A5B8IGP8_9VIRU (Uncharacterized protein n=1 Tax=Mimiviridae sp. ChoanoV1 TaxID=2596887 RepID=A0A5B8IGP8_9VIRU)

HSP 1 Score: 82.0 bits (201), Expect = 1.260e-12
Identity = 61/226 (26.99%), Postives = 103/226 (45.58%), Query Frame = 2 
Query:    2 DLTTIGTEGISRYVMGGSQWVEDLPFMYYEEGLSGCAEDG------------MGSDIRTLG--------EKTPEDDH-------DMAYPMELGWGLELRFLDSFPVARLRQVLDLVVLVADRSRIYNVVHPVQGNYAWTAGIKQVMIEGWNAILPEEFINGLRINVGLDLSGTSRQAYDVLAAATAELHADHRDGLWTRLFLETAGTPGETSTPPVPHNTNRESWE 598
            ++  +GT G+ RY    S W + L F   ++ L  C E              + SDIRT          E+T   D        +M +P     G+E+R  D F    L  +L  +V +++ +R++   + V  N  W   ++ +M  GW AIL +++I+ LR N+ L+L+  ++ A+  L A   EL  +H++G +  L +E          P +P   NR SW+
Sbjct:  338 NVRKLGTSGVGRYSNIESVWRKGLNFNSTKK-LMECDEKAKKNKNLKKRGSILSSDIRTFNFDFSDKCSERTGRSDECPKVSGGNMVHPN----GMEIRIFDHFNSVHLIDLLRFMVYLSENARLFETKNYVYSNLTWKTAVRNIMKNGWRAILSDKYIDELRKNLNLELNFKNKTAFGFLEALNEELFMNHKNGFFPSLLIEKK----YREAPDLPE-LNRFSWQ 553
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig108.1922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S4ID32_9STRA1.280e-2433.98Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A5B8IGP8_9VIRU1.260e-1226.99Uncharacterized protein n=1 Tax=Mimiviridae sp. Ch... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig108contigS-ischiensis_contig108:139944..142791 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-03_004670.1
Exons4
Model size1816
Cds size993
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig108.1922.1prot_S-ischiensis_contig108.1922.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig108 140724..142748 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815573.094381-UTR-S-ischiensis_contig108:139943..1407231622815573.094381-UTR-S-ischiensis_contig108:139943..140723Schizocladia ischiensis KU_0333UTRS-ischiensis_contig108 139944..140723 -
1695739778.5179102-UTR-S-ischiensis_contig108:139943..1407231695739778.5179102-UTR-S-ischiensis_contig108:139943..140723Schizocladia ischiensis KU_0333UTRS-ischiensis_contig108 139944..140723 -
1622815573.1491387-UTR-S-ischiensis_contig108:142748..1427911622815573.1491387-UTR-S-ischiensis_contig108:142748..142791Schizocladia ischiensis KU_0333UTRS-ischiensis_contig108 142749..142791 -
1695739778.5592427-UTR-S-ischiensis_contig108:142748..1427911695739778.5592427-UTR-S-ischiensis_contig108:142748..142791Schizocladia ischiensis KU_0333UTRS-ischiensis_contig108 142749..142791 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815573.1053798-CDS-S-ischiensis_contig108:140723..1410181622815573.1053798-CDS-S-ischiensis_contig108:140723..141018Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 140724..141018 -
1695739778.526467-CDS-S-ischiensis_contig108:140723..1410181695739778.526467-CDS-S-ischiensis_contig108:140723..141018Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 140724..141018 -
1622815573.117224-CDS-S-ischiensis_contig108:141533..1419221622815573.117224-CDS-S-ischiensis_contig108:141533..141922Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 141534..141922 -
1695739778.5345018-CDS-S-ischiensis_contig108:141533..1419221695739778.5345018-CDS-S-ischiensis_contig108:141533..141922Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 141534..141922 -
1622815573.1271987-CDS-S-ischiensis_contig108:142100..1422411622815573.1271987-CDS-S-ischiensis_contig108:142100..142241Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 142101..142241 -
1695739778.5426767-CDS-S-ischiensis_contig108:142100..1422411695739778.5426767-CDS-S-ischiensis_contig108:142100..142241Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 142101..142241 -
1622815573.1394315-CDS-S-ischiensis_contig108:142580..1427481622815573.1394315-CDS-S-ischiensis_contig108:142580..142748Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 142581..142748 -
1695739778.5509303-CDS-S-ischiensis_contig108:142580..1427481695739778.5509303-CDS-S-ischiensis_contig108:142580..142748Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 142581..142748 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig108.1922.1

>prot_S-ischiensis_contig108.1922.1 ID=prot_S-ischiensis_contig108.1922.1|Name=mRNA_S-ischiensis_contig108.1922.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=331bp
MGGSQWVEDLPFMYYEEGLSGCAEDGMGSDIRTLGEKTPEDDHDMAYPME
LGWGLELRFLDSFPVARLRQVLDLVVLVADRSRIYNVVHPVQGNYAWTAG
IKQVMIEGWNAILPEEFINGLRINVGLDLSGTSRQAYDVLAAATAELHAD
HRDGLWTRLFLETAGTPGETSTPPVPHNTNRESWEHAAMAAGFHGGELLT
LLFGEGAETVTPGRTYTMGDMRDNLLDHPRAERCSDDVEDLVYLASTLNL
LAAEQDAEGRVSSITLHDSDELTAAKASTGCNGPSKDDGSGTGGRDKHKD
EDKHSGSESDNANDSDDDDEDTLGTDYGSK*
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mRNA from alignment at S-ischiensis_contig108:139944..142791-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig108.1922.1 ID=mRNA_S-ischiensis_contig108.1922.1|Name=mRNA_S-ischiensis_contig108.1922.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2848bp|location=Sequence derived from alignment at S-ischiensis_contig108:139944..142791- (Schizocladia ischiensis KU_0333)
CGACCTCACGACCATCGGCACCGAAGGCATCTCGCGATACGTGATGGGCG
GCAGCCAGTGGGTGGAGGACCTGCCCTTTATGTACTACGAAGAAGGGCTC
TCTGGCTGCGCGGAGGACGGCATGGGCAGCGACATCCGCACCCTGGGCGA
GAAGACCCCCGAGGACGACCACGACATGGCCTACCCCATGGAGCTGGGCT
GGGGCTTGGAGGTGAGCTCCTGAGCTGTACAAGTTGCATAGAGTATGTTC
GCTGGTTTGCTCTTTCCTTCAAGTTGTCGCCATGACGGCACTGTGAATGG
GCAATGACATTGCGTTTGCCGCCACATAGTGGTACATAGTGCAGTGCAGG
ACCGTTGACAATGTGCCTCAAGAGTTGTCGCACGAGTGCCTGCTCAGTGT
AATGCGCTTGCTTCAACTGCACGCCCGTTGAGCGCAGCAAAGCCAGCTTG
TGCCTTGCCCCTGGGCGAAGAGTGCCTCATCTCTGCAAATATGCTGATGT
GCAGACCTCTCCCTCCGCCCTCTTCTGCTCCCCGCTCCCTGCCCCGGCAG
CTGCGCTTCCTGGACAGCTTCCCCGTCGCACGGCTGCGTCAAGTCCTCGA
CTTGGTTGTGCTGGTGGCCGACAGGAGTCGCATCTACAACGTGGTGCATC
CCGTGCAGGGCAACTACGCGTGGACCGCCGGGATCAAACAGGCAAGTCCT
GGCTTGCTTCCTTTATGTGCCGCTTGTCCAGTACAGTTTCAGAGTTGTGC
TGTGCTGTACCTGGTTCGGGCGTTGGCTTCGCCGCTTGCACTTCGAAGTA
CCTACTGTACATACACCTACAGCAGCCACACCCGTGGATGTACACACAAA
TGCCACTGCGCTTGCACAGGTCATGATCGAAGGTTGGAACGCCATCCTTC
CCGAGGAGTTCATCAATGGCCTACGCATCAACGTGGGCCTTGACCTCTCA
GGCACAAGCCGCCAGGCGTACGATGTCCTGGCAGCTGCCACCGCTGAACT
GCACGCGGACCACCGTGACGGGCTGTGGACTCGTCTCTTCCTGGAAACCG
CGGGCACGCCCGGGGAGACCTCCACCCCACCCGTTCCGCACAACACCAAC
AGAGAGAGCTGGGAGCACGCTGCGATGGCGGCCGGCTTCCACGGGGGCGA
GCTGCTCACCCTGCTTTTCGGGGAAGGCGCTGAGACCGTGACGCCCGGTC
GCACCTACACCATGGGCGACATGCGCGACAACCTTCTGGACCACCCGAGG
GCGGAAAGGTGCGCGGGCCATTACGGAGTTGTTGTTTGGTTTGGTATCGG
AAGGATTGAAGGCGGATGAAGGAAGGTGGGGCCCGGCACTCGCAAAGTAG
ATTTTTCTCTCGTCCACTCGCTCCTTTCCCTCCTCACAAAAGATGCCGTG
CTCGGTTGCTGTGTTTTTTGTAGACTTCCCTTTTACCAAGCCAGAATTCA
TTTTGTTGCCGCTGGTCTGGCGAGGGCAACTTGACACTTTTCAATGCGGA
AGATTTGAAGAACAAGAGCCCCAACAAGGAATACCAAATGTCTTTTGATT
AGGTTTGTTTGAACTGAACCTCTTGGGCGGCCGCAGGCTTCAGGTTCCCA
GCCTGGGCGACTGCGGAACCTTGTCACTGTACTTTGTCAATTCACCTGTT
GCACCACTTGGCTTTCCCGCATTGGGATTACAGCGCTTCTGTCGTACACG
TTGTGACATGCAAATGCCTGCAACTCATCTTGACGGAAAACCGCCCGGGC
TCGCCCCCATTGCTGTGCACCAGGTGCTCTGACGATGTGGAGGACCTCGT
GTACCTGGCATCCACGCTCAACCTTCTCGCCGCCGAGCAAGACGCTGAGG
GGCGGGTGTCTTCCATCACTCTCCATGACAGCGACGAGCTCACCGCAGCC
AAGGCCTCGACCGGTTGCAATGGCCCCAGCAAAGATGACGGCTCTGGCAC
GGGCGGTCGGGACAAGCACAAGGACGAGGACAAGCACTCCGGCAGCGAGT
CCGACAATGCCAATGACTCGGACGATGACGATGAGGACACGCTCGGCACT
GATTATGGCAGCAAGTAGATACTGTACTCGTACGAGTATACCGCATAGCA
TCCCCGGACCTGAGTGGCACATGGTTGCGAGTAGCTGTATTCTGGCTGTT
TGAATATTTTTGTTAACCCATCTGCAAGCGCCAAGCTGTCCGGGCGTCAT
GACCAAACCGCGGGCGGGTCATGGAGACGAGCGCAGGCTTTTTAGAGCAT
ACTTATACAGTAGTACGAGAACCAGTTTGCTTTCACGTGTTGATTGGTGT
ATGCCCCTGTGCCCATGTGACAGTGTTGTACCCTACATGCGATGCGCACG
ACATGTCACGCTGTCCATGACACCAGACCGTGTTGTTGGGTGGGTTACGG
AGACGCGTGCAGGCTTAGAGCACTTGCTGCAGTCCGAATTTGCTTTACTG
TGAGTTGTTATAGCCCTGTACCCTTGCGATACTGTTGTACTCGTACCCTA
CATGCGATGCGGACCACGCATCACGCTGTCCGTGCCACATGCCCAAATTG
TGGGCAGGCCACGGGAACAAGCGCAGGCTCTTGTGTGTTTCTTTTAGACT
TTTTGATTACAGAACAACAGTTTTGCCCTGCGCATGCGACACGGACAAAG
GGCTGCATGAACAAACTGTGCGCCAGTCCTGGGCATGACCTGCAGGCTGA
CGTGCTCCTGAGAATTTGTCATTTTGTACAATTATCGTCCTTTGACATGT
ATGACACCCCGTGAAGTATACAGTACACTCTACTCGAGCGCACTGTACAA
GTTGTATTAATTGTACATACTTTGAATCACCTCACATGTCTGGCTAGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig108:139944..142791-

>mRNA_S-ischiensis_contig108.1922.1 ID=mRNA_S-ischiensis_contig108.1922.1|Name=mRNA_S-ischiensis_contig108.1922.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1986bp|location=Sequence derived from alignment at S-ischiensis_contig108:139944..142791- (Schizocladia ischiensis KU_0333)
ATGGGCGGCAGCCAGTGGGTGGAGGACCTGCCCTTTATGTACTACGAAGA
AGGGCTCTCTGGCTGCGCGGAGGACGGCATGGGCAGCGACATCCGCACCC
TGGGCGAGAAGACCCCCGAGGACGACCACGACATGGCCTACCCCATGGAG
CTGGGCTGGGGCTTGGAGATGGGCGGCAGCCAGTGGGTGGAGGACCTGCC
CTTTATGTACTACGAAGAAGGGCTCTCTGGCTGCGCGGAGGACGGCATGG
GCAGCGACATCCGCACCCTGGGCGAGAAGACCCCCGAGGACGACCACGAC
ATGGCCTACCCCATGGAGCTGGGCTGGGGCTTGGAGCTGCGCTTCCTGGA
CAGCTTCCCCGTCGCACGGCTGCGTCAAGTCCTCGACTTGGTTGTGCTGG
TGGCCGACAGGAGTCGCATCTACAACGTGGTGCATCCCGTGCAGGGCAAC
TACGCGTGGACCGCCGGGATCAAACAGCTGCGCTTCCTGGACAGCTTCCC
CGTCGCACGGCTGCGTCAAGTCCTCGACTTGGTTGTGCTGGTGGCCGACA
GGAGTCGCATCTACAACGTGGTGCATCCCGTGCAGGGCAACTACGCGTGG
ACCGCCGGGATCAAACAGGTCATGATCGAAGGTTGGAACGCCATCCTTCC
CGAGGAGTTCATCAATGGCCTACGCATCAACGTGGGCCTTGACCTCTCAG
GCACAAGCCGCCAGGCGTACGATGTCCTGGCAGCTGCCACCGCTGAACTG
CACGCGGACCACCGTGACGGGCTGTGGACTCGTCTCTTCCTGGAAACCGC
GGGCACGCCCGGGGAGACCTCCACCCCACCCGTTCCGCACAACACCAACA
GAGAGAGCTGGGAGCACGCTGCGATGGCGGCCGGCTTCCACGGGGGCGAG
CTGCTCACCCTGCTTTTCGGGGAAGGCGCTGAGACCGTGACGCCCGGTCG
CACCTACACCATGGGCGACATGCGCGACAACCTTCTGGACCACCCGAGGG
CGGAAAGGTCATGATCGAAGGTTGGAACGCCATCCTTCCCGAGGAGTTCA
TCAATGGCCTACGCATCAACGTGGGCCTTGACCTCTCAGGCACAAGCCGC
CAGGCGTACGATGTCCTGGCAGCTGCCACCGCTGAACTGCACGCGGACCA
CCGTGACGGGCTGTGGACTCGTCTCTTCCTGGAAACCGCGGGCACGCCCG
GGGAGACCTCCACCCCACCCGTTCCGCACAACACCAACAGAGAGAGCTGG
GAGCACGCTGCGATGGCGGCCGGCTTCCACGGGGGCGAGCTGCTCACCCT
GCTTTTCGGGGAAGGCGCTGAGACCGTGACGCCCGGTCGCACCTACACCA
TGGGCGACATGCGCGACAACCTTCTGGACCACCCGAGGGCGGAAAGGTGC
TCTGACGATGTGGAGGACCTCGTGTACCTGGCATCCACGCTCAACCTTCT
CGCCGCCGAGCAAGACGCTGAGGGGCGGGTGTCTTCCATCACTCTCCATG
ACAGCGACGAGCTCACCGCAGCCAAGGCCTCGACCGGTTGCAATGGCCCC
AGCAAAGATGACGGCTCTGGCACGGGCGGTCGGGACAAGCACAAGGACGA
GGACAAGCACTCCGGCAGCGAGTCCGACAATGCCAATGACTCGGACGATG
ACGATGAGGACACGCTCGGCACTGATTATGGCAGCAAGTAGGTGCTCTGA
CGATGTGGAGGACCTCGTGTACCTGGCATCCACGCTCAACCTTCTCGCCG
CCGAGCAAGACGCTGAGGGGCGGGTGTCTTCCATCACTCTCCATGACAGC
GACGAGCTCACCGCAGCCAAGGCCTCGACCGGTTGCAATGGCCCCAGCAA
AGATGACGGCTCTGGCACGGGCGGTCGGGACAAGCACAAGGACGAGGACA
AGCACTCCGGCAGCGAGTCCGACAATGCCAATGACTCGGACGATGACGAT
GAGGACACGCTCGGCACTGATTATGGCAGCAAGTAG
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