mRNA_S-ischiensis_contig108.1911.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig108.1911.1 vs. uniprot
Match: D7FVF6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVF6_ECTSI) HSP 1 Score: 339 bits (869), Expect = 5.200e-106 Identity = 179/342 (52.34%), Postives = 236/342 (69.01%), Query Frame = 3
Query: 96 ENPELPVWKKRLSFRGQPYRYGEHQNGVMGYLRVRLVAVADLAGSDWSLLKGGSK-----------DELCPYVSVGLGKVHVRSSPRVAEYASGGMPVRASWKKEILSVEVLKGTLPPGEPMVLDVQVYNHDAGMVQSMIQTAVRSVTGSGGSLLGVGDLEVSGLFLGTCHLVDTWVELQPRGRCHVHVEYEPKGVEPRPNDVIYLESFARWGGSVVLPPGEAMVVHDVKGQSLLVGFDCDSSIKDQQRVQEGRIRLHRNCAFVVERLNWVDMALVTSARPLDAMLRTDVGSWTVRKLRPLFEAACVLAAPMFASLHIALTTGRIALKTALAGTSAVVSDSL 1088
E+ E+P WK++LSFRGQPYRY HQNGVMG+ ++R+VA ++++ DWS + PYV+V LGK VRSS R A+ S G +RASW + +LSVEV+KG + PGE L VQVYN D+ +VQS++ +AV +V GS GSLLG G+L+VS L G HL+DTWVEL+P+GR HVHVEYEPKG++P NDV++LESFARWG S+V+PPG MVV D K LLV FD + +EGR+RLHRN +VERL+W+D++L ARP+DA+LRTD GSW VRK RPL + V+ AP+ ASL +A + ++ALK L GT AV +++
Sbjct: 38 EDEEVPAWKRQLSFRGQPYRYAHHQNGVMGHFQIRVVAASEISEPDWSRVTSNLNINAIXXXXXXXXSALPYVAVSLGKCTVRSSAREAQPDSLGT-LRASWPRGMLSVEVMKGDIRPGELPRLAVQVYNQDS-IVQSVLSSAVSTVMGSRGSLLGAGELDVSSLLSGGAHLIDTWVELEPKGRVHVHVEYEPKGIQPEKNDVVFLESFARWGDSLVIPPGVPMVVLDSKPPFLLVAFDTFTG-------REGRLRLHRNTVSLVERLSWLDVSLAMLARPVDALLRTDTGSWCVRKSRPLLQPLIVIVAPLQASLLVAFSALKVALKGVLMGTHAVYQEAV 370
BLAST of mRNA_S-ischiensis_contig108.1911.1 vs. uniprot
Match: A0A7S1UJC0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJC0_9STRA) HSP 1 Score: 166 bits (419), Expect = 2.410e-41 Identity = 117/376 (31.12%), Postives = 178/376 (47.34%), Query Frame = 3
Query: 57 VADPVAPARHRP--DENPELPVWKKRLSFRGQPYRYGEHQNGVMGYLRVRLVAVADLAGSDWSLLKG-GSKDELCPYVSVGLGKVHVRSSPRVAEYASGGMPVRASWKKEILSVEVLKGTLPPGEPMVLDVQVYNHDAGMVQSMIQTAVRSVTGSGGSLLGVGDLEVSGLFLGTCHLVDTWVELQ------------------PRGRC-------------HVHVEYEPKGVEPRPNDVIYLESFARWGGSVVLPPGEAMVVHDVKGQSLLVGFDCD-SSIKDQQRVQEGRIRLHRNCAFVVERLNWVDMALVTSARPLDAMLRTDVGSWTVRKLRPLFEAACVLAAPMFASLHIALTTGRIALKTALAGTSAVVS 1079
+ P+ ++ +P DE+ P W +S+RG YRY +HQ VMG + R+V +L DWS L+ S + PYV + +G P G +W E + VLK + G + LDVQ + H +V ++ + +G + LG+G +E+S L LG ++D WV LQ PR H+ VEYEP+G+ P+ D++YLE FAR + ++PPGE M V ++ G LVGF S K Q +++HRN FVVERL VD ++ P D + T VG + R P L AP++ + ++ + T R+A+++A AG +A S
Sbjct: 1 MRSPIRRSQSKPATDEDQPAPRWVSNMSYRGNAYRYLDHQQNVMGTVHARVVEAKNLRRLDWSYLQPLASAQNVNPYVKLSMGGDEEIRMPICTGVVRGNC--NPTWVSEKFILPVLKSAVRSGIAVTLDVQAF-HSENVVARVLPNMI-----TGNNSLGLGQVELSALLLGEAQVLDVWVPLQTGAHSKVKGGKGEESKDEPRPGAPLQPVVDEFAPAVHIVVEYEPEGLHPQRGDIVYLEPFARSPVNQIIPPGEPMAVIEMSGSYALVGFQSGYSEFKCQ-------LKIHRNAIFVVERLTLVDGIWKSALAPTDYLFGTRVGRFVRRTTGPYVSYVNTLLAPVYFASNVGIGTVRLAVRSAAAGVAATGS 361
BLAST of mRNA_S-ischiensis_contig108.1911.1 vs. uniprot
Match: W7TJW2_9STRA (C2 domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJW2_9STRA) HSP 1 Score: 155 bits (393), Expect = 2.430e-38 Identity = 115/342 (33.63%), Postives = 170/342 (49.71%), Query Frame = 3
Query: 90 PDENPELPVWKKRLSFRGQPYRYGEHQNGVMGYLRVRLVAVADLAGSDWSLLKGGSKDELCPYVSVGLGKVHVRSS--PRVAEYASGGMPVRASWKKEILSVEVLKGTLPPGEPMVLDVQVYNHDAGMVQSMIQTAVRSVTGSGGSLLGVGDLEVSGLFLGT--CHLVDTWVELQPR-GRCHVHVEYEPKGVEPRPNDVIYLESFARWGGSVVLPPGEAMVVHDVKGQSLLVGFDCDSS--IKDQQRVQEGRIRLHRNCAFVVERLNWVDMALVTSARPLDAMLRTDVGSWTVRKLRPLFEAACVLAAPMFASLHIALTTGRIALKTALAG----TSAVVSD 1082
P + + P+W+ ++ R PYRY +HQ G +G L +RL+ DL + + G + P V + + RSS PR A SW+ E ++ + KG L G P+++ Q DA +S + GS G LG G L++ L G+ H++D WV L P GR HV VEYEP G+ P +DV++ E+FAR S+VLP E MVV V G LLVGF ++ + + E R+R+HR FV+ER +D A + D + W ++L+P + A VLA P SLH+ R+A+++ +A TS V D
Sbjct: 8 PFQAADAPIWRPEMAVRQNPYRYLDHQKGTIGILDIRLIDGRDLDSTGRG--ESGRSASVSPQVVIRVPAEEARSSVVPRNAH---------PSWQ-ERFTMNLKKGVLQEGAPVLVVFQAL--DAASWRSPLG-------GSKGRDLGSGSLDILPLLNGSRGSHVMDEWVSLSPGPGRLHVVVEYEPVGMVPEMDDVVFFEAFARSPRSLVLPTNEPMVVRAVSGAYLLVGFRTPTARQARGPEAAPECRLRVHRQTVFVIERHTLLDAAWHSVIDAADMVQAVPPVRWAKKQLQPYAKYAQVLARPALTSLHVTFAAARLAMRSGMAALGGATSTVFGD 328
BLAST of mRNA_S-ischiensis_contig108.1911.1 vs. uniprot
Match: A0A7S2XMA3_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XMA3_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 1.290e-13 Identity = 56/174 (32.18%), Postives = 87/174 (50.00%), Query Frame = 3
Query: 609 GRCHVHVEYEPKGVEPRPNDVIYLESFARWGGSV-----VLPPGEAMVVHDVKGQSLLVGFDCDSSIKDQQR------------VQEGRIRLHRNCAFVVERLNWVDMALVTSARPLDAMLRTDVGSWTVRKLRPLFEAACVLAAPMFASLHIALTTGRIALKTALAGTSAVVS 1079
G + V YEP G+ PRPNDV LE+FAR + +LPP + + V DV+G LLV ++ S+ Q+ +++GR+R+HRN FV+ER N VD ++ + P D +L T +G T P +A + P+ L +G++ A G A ++
Sbjct: 306 GSVRILVSYEPHGLVPRPNDVCALEAFARRSLRLASCRPILPPLQPLRVLDVRGSYLLVEYNIPSTSSSAQQGNNSSKNGKAESIKKGRVRIHRNAVFVLERTNVVDKSINFALAPADILLATPLGRATTDFAGPYVDAVGDMLMPV-------LLSGKLLFSAAKTGAHASIN 472 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig108.1911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig108.1911.1 >prot_S-ischiensis_contig108.1911.1 ID=prot_S-ischiensis_contig108.1911.1|Name=mRNA_S-ischiensis_contig108.1911.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=355bp MMKSPRQPVADPVAPARHRPDENPELPVWKKRLSFRGQPYRYGEHQNGVMback to top mRNA from alignment at S-ischiensis_contig108:48699..59394- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig108.1911.1 ID=mRNA_S-ischiensis_contig108.1911.1|Name=mRNA_S-ischiensis_contig108.1911.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=10696bp|location=Sequence derived from alignment at S-ischiensis_contig108:48699..59394- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig108:48699..59394- >mRNA_S-ischiensis_contig108.1911.1 ID=mRNA_S-ischiensis_contig108.1911.1|Name=mRNA_S-ischiensis_contig108.1911.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2130bp|location=Sequence derived from alignment at S-ischiensis_contig108:48699..59394- (Schizocladia ischiensis KU_0333)back to top |