mRNA_S-ischiensis_contig108.1910.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig108.1910.1
Unique NamemRNA_S-ischiensis_contig108.1910.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig108.1910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig108contigS-ischiensis_contig108:3955..4143 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size162
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815571.7108002-CDS-S-ischiensis_contig108:3956..40461622815571.7108002-CDS-S-ischiensis_contig108:3956..4046Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 3957..4046 -
1695739777.6330247-CDS-S-ischiensis_contig108:3956..40461695739777.6330247-CDS-S-ischiensis_contig108:3956..4046Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 3957..4046 -
1622815571.7214055-CDS-S-ischiensis_contig108:4074..41431622815571.7214055-CDS-S-ischiensis_contig108:4074..4143Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 4075..4143 -
1695739777.6425543-CDS-S-ischiensis_contig108:4074..41431695739777.6425543-CDS-S-ischiensis_contig108:4074..4143Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 4075..4143 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig108.1910.1prot_S-ischiensis_contig108.1910.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig108 3957..4143 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig108.1910.1

>prot_S-ischiensis_contig108.1910.1 ID=prot_S-ischiensis_contig108.1910.1|Name=mRNA_S-ischiensis_contig108.1910.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=53bp
PYPRRHHHHHCRPRHPPPGGRPWTRVLSSPPRGPHVQSRQRRNQVEPSAL
AAQ
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mRNA from alignment at S-ischiensis_contig108:3955..4143-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig108.1910.1 ID=mRNA_S-ischiensis_contig108.1910.1|Name=mRNA_S-ischiensis_contig108.1910.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=189bp|location=Sequence derived from alignment at S-ischiensis_contig108:3955..4143- (Schizocladia ischiensis KU_0333)
CCATATCCGCGTCGTCACCACCACCACCATTGTCGGCCTCGGCATCCGCC
CCCCGGCGGCCGCCCCTGGGCAGCCGCCGGCACCGACGCTGCCCCAGACA
CGCGTGCTGTCCTCGCCGCCACGCGGGCCGCACGTGCAGAGTCGCCAGAG
GCGGAACCAAGTTGAGCCCAGTGCCCTCGCAGCCCAGCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig108:3955..4143-

>mRNA_S-ischiensis_contig108.1910.1 ID=mRNA_S-ischiensis_contig108.1910.1|Name=mRNA_S-ischiensis_contig108.1910.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=318bp|location=Sequence derived from alignment at S-ischiensis_contig108:3955..4143- (Schizocladia ischiensis KU_0333)
CCATATCCGCGTCGTCACCACCACCACCATTGTCGGCCTCGGCATCCGCC
CCCCGGCGGCCGCCCCTGGCCATATCCGCGTCGTCACCACCACCACCATT
GTCGGCCTCGGCATCCGCCCCCCGGCGGCCGCCCCTGGACACGCGTGCTG
TCCTCGCCGCCACGCGGGCCGCACGTGCAGAGTCGCCAGAGGCGGAACCA
AGTTGAGCCCAGTGCCCTCGCAGCCCAGACACGCGTGCTGTCCTCGCCGC
CACGCGGGCCGCACGTGCAGAGTCGCCAGAGGCGGAACCAAGTTGAGCCC
AGTGCCCTCGCAGCCCAG
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