mRNA_S-ischiensis_contig107.1909.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig107.1909.1
Unique NamemRNA_S-ischiensis_contig107.1909.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig107.1909.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig107contigS-ischiensis_contig107:210847..211349 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size385
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815570.0064533-CDS-S-ischiensis_contig107:210848..2109431622815570.0064533-CDS-S-ischiensis_contig107:210848..210943Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 210849..210943 -
1695739776.4833407-CDS-S-ischiensis_contig107:210848..2109431695739776.4833407-CDS-S-ischiensis_contig107:210848..210943Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 210849..210943 -
1622815570.0171392-CDS-S-ischiensis_contig107:211063..2113491622815570.0171392-CDS-S-ischiensis_contig107:211063..211349Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 211064..211349 -
1695739776.4913325-CDS-S-ischiensis_contig107:211063..2113491695739776.4913325-CDS-S-ischiensis_contig107:211063..211349Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 211064..211349 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig107.1909.1prot_S-ischiensis_contig107.1909.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig107 210849..211349 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig107.1909.1

>prot_S-ischiensis_contig107.1909.1 ID=prot_S-ischiensis_contig107.1909.1|Name=mRNA_S-ischiensis_contig107.1909.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=127bp
SNELIPFAAEAHGALNRKAGLLLREMATHVAGVPGAPGFDALGRASFLRR
VRECISCVLQRHQSWRLLAAASMALRARVHAGPQGGGGDGGGGGGDGGGG
GGGGGGDGDGGGGSGGGAARDASAGGG
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mRNA from alignment at S-ischiensis_contig107:210847..211349-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig107.1909.1 ID=mRNA_S-ischiensis_contig107.1909.1|Name=mRNA_S-ischiensis_contig107.1909.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=503bp|location=Sequence derived from alignment at S-ischiensis_contig107:210847..211349- (Schizocladia ischiensis KU_0333)
AGCAACGAGCTCATCCCCTTCGCTGCCGAGGCCCACGGCGCCCTGAACCG
CAAGGCTGGCCTTCTCCTCCGCGAGATGGCCACGCACGTGGCTGGTGTCC
CTGGGGCCCCTGGCTTCGACGCCCTGGGACGCGCGTCGTTCTTGCGCCGG
GTGCGTGAGTGCATCTCATGCGTACTGCAACGCCACCAATCTTGGCGGTT
GCTCGCCGCCGCGTCGATGGCGCTGCGTGCTCGGGTGCACGCCGGCCCCC
AAGGTGGCGGTGGCGACGGTGGCGGCGGCGGCGGCGGCGGCGGTGGTGAT
GGTGACGGCGGCGGTGGTGGCCGCGGTGGTGCTGCCGGGGACGACGGGGG
CGGCGGAGGCGGTGGTGGCGGTGGTGGCGCTGCCGGGGAAGGCAGTGGCG
GCAGAGATGGTGGCGGCGGCGGCGGCGGCGGCGGTGGTGATGGTGACGGC
GGCGGTGGCAGCGGCGGCGGTGCTGCCAGGGACGCCAGCGCCGGCGGTGG
CGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig107:210847..211349-

>mRNA_S-ischiensis_contig107.1909.1 ID=mRNA_S-ischiensis_contig107.1909.1|Name=mRNA_S-ischiensis_contig107.1909.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=762bp|location=Sequence derived from alignment at S-ischiensis_contig107:210847..211349- (Schizocladia ischiensis KU_0333)
AGCAACGAGCTCATCCCCTTCGCTGCCGAGGCCCACGGCGCCCTGAACCG
CAAGGCTGGCCTTCTCCTCCGCGAGATGGCCACGCACGTGGCTGGTGTCC
CTGGGGCCCCTGGCTTCGACGCCCTGGGACGCGCGTCGTTCTTGCGCCGG
GTGCGTGAGTGCATCTCATGCGTACTGCAACGCCACCAATCTTGGCGGTT
GCTCGCCGCCGCGTCGATGGCGCTGCGTGCTCGGGTGCACGCCGGCCCCC
AAGGTGGCGGTGGCGACGGTGGCGGCGGCGGCGGCGAGCAACGAGCTCAT
CCCCTTCGCTGCCGAGGCCCACGGCGCCCTGAACCGCAAGGCTGGCCTTC
TCCTCCGCGAGATGGCCACGCACGTGGCTGGTGTCCCTGGGGCCCCTGGC
TTCGACGCCCTGGGACGCGCGTCGTTCTTGCGCCGGGTGCGTGAGTGCAT
CTCATGCGTACTGCAACGCCACCAATCTTGGCGGTTGCTCGCCGCCGCGT
CGATGGCGCTGCGTGCTCGGGTGCACGCCGGCCCCCAAGGTGGCGGTGGC
GACGGTGGCGGCGGCGGCGGCGATGGTGGCGGCGGCGGCGGCGGCGGCGG
TGGTGATGGTGACGGCGGCGGTGGCAGCGGCGGCGGTGCTGCCAGGGACG
CCAGCGCCGGCGGTGGCATGGTGGCGGCGGCGGCGGCGGCGGCGGTGGTG
ATGGTGACGGCGGCGGTGGCAGCGGCGGCGGTGCTGCCAGGGACGCCAGC
GCCGGCGGTGGC
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