mRNA_S-ischiensis_contig107.1907.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig107.1907.1
Unique NamemRNA_S-ischiensis_contig107.1907.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig107.1907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig107contigS-ischiensis_contig107:185457..186887 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1431
Cds size855
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig107.1907.1prot_S-ischiensis_contig107.1907.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig107 186010..186864 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815570.160446-UTR-S-ischiensis_contig107:185456..1860091622815570.160446-UTR-S-ischiensis_contig107:185456..186009Schizocladia ischiensis KU_0333UTRS-ischiensis_contig107 185457..186009 +
1695739776.5318224-UTR-S-ischiensis_contig107:185456..1860091695739776.5318224-UTR-S-ischiensis_contig107:185456..186009Schizocladia ischiensis KU_0333UTRS-ischiensis_contig107 185457..186009 +
1622815570.1877954-UTR-S-ischiensis_contig107:186864..1868871622815570.1877954-UTR-S-ischiensis_contig107:186864..186887Schizocladia ischiensis KU_0333UTRS-ischiensis_contig107 186865..186887 +
1695739776.5566626-UTR-S-ischiensis_contig107:186864..1868871695739776.5566626-UTR-S-ischiensis_contig107:186864..186887Schizocladia ischiensis KU_0333UTRS-ischiensis_contig107 186865..186887 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815570.1751013-CDS-S-ischiensis_contig107:186009..1868641622815570.1751013-CDS-S-ischiensis_contig107:186009..186864Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 186010..186864 +
1695739776.5403173-CDS-S-ischiensis_contig107:186009..1868641695739776.5403173-CDS-S-ischiensis_contig107:186009..186864Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 186010..186864 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig107.1907.1

>prot_S-ischiensis_contig107.1907.1 ID=prot_S-ischiensis_contig107.1907.1|Name=mRNA_S-ischiensis_contig107.1907.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=285bp
MRAEHVYHALQAVCGTERSPAFTLIPVVWLLGACRLLVTRTDHVHHALQA
VRGTEGRAAVILILEGCFLGALRLLATPVGHVHHALQAMRGTEGCTVVTI
VAVGWPLGARRLLAPRADQVHHAIQAVHGTVGRPAVTLLPVGWHLVARRL
LATSALHVHHAHHAVCGTKHSMAVTLVPVGWPLVARPLLTMRVLHVHHAL
QAVCGIEDHTAVTLMPVGRTLGARHLLATSTPVPLCLRCRGTAYVIAGKW
SHRHCRRRVGPPAHPSSPPHAPPPGEAFCPAPQS*
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mRNA from alignment at S-ischiensis_contig107:185457..186887+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig107.1907.1 ID=mRNA_S-ischiensis_contig107.1907.1|Name=mRNA_S-ischiensis_contig107.1907.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1431bp|location=Sequence derived from alignment at S-ischiensis_contig107:185457..186887+ (Schizocladia ischiensis KU_0333)
GGGTAGTACCGTAGGACTTCATTCAATCCATACCTCACAAGTGTGGCTTG
CCAGGATGGCTTGTACTTCGAAGTAGTGCACACTTCCTACAGTAAACACA
GCTACAGCACAAGTACAAAGTGTACCCTACTCAGGGTACAAACTTCCAAC
AGTCACTGTCACTTATTCCAGCACCCGTACTCGTACTGTGACAACAAACA
TCAACCACTCAGCGCAGGTGAAACACGCCCACCATGCCCTCCAAGCGGTG
CTCGGCACAGAAGGTTGCACGGTGGTCACCATCGTTTCCGTAGGACGGCC
GCTTGGTGTACGTCGCCTCCTGGCAACGAGCGTTCCTCACGTTCACCATG
CCTTCCAAGCGGTGCGTGGCACAGAAGGTCGCACGGCGGTCACCCTCATT
GCCGTAGGATGGCTGCTTGTTGCATGTCGCCTCCAGGCAACGCCTTTGGG
CCACGTCCACCATGCCCTCCAAGCGGTGCGTGGCGCAGAAGGTTGCGCGA
CGATCACCCTCATTCCCGTAGGATGGCCACTTGGTGCACGTCGCCTCCTG
GCAATGCGGGCTGAACACGTCTACCATGCCCTCCAAGCGGTGTGCGGCAC
AGAACGTAGCCCCGCATTCACCCTCATTCCCGTAGTTTGGCTGCTTGGTG
CATGTCGCCTCTTGGTAACGCGAACTGATCACGTCCACCATGCCCTCCAA
GCGGTGCGCGGCACAGAAGGTCGCGCGGCGGTCATCCTCATTCTCGAAGG
ATGTTTTCTTGGCGCACTTCGCCTACTGGCAACGCCGGTTGGCCACGTCC
ACCATGCCCTCCAAGCGATGCGCGGCACAGAAGGTTGCACGGTGGTCACC
ATCGTTGCCGTAGGATGGCCGCTTGGTGCACGTCGCCTCCTGGCACCGCG
GGCTGACCAAGTTCACCATGCCATCCAAGCGGTGCACGGCACAGTAGGTC
GCCCGGCGGTCACCCTCCTTCCCGTAGGATGGCACCTTGTTGCACGTCGC
CTCCTGGCAACGAGCGCGCTTCACGTTCACCATGCCCACCATGCAGTGTG
CGGCACAAAACACAGCATGGCGGTCACCCTCGTTCCCGTAGGATGGCCGC
TTGTTGCACGTCCCCTCCTGACAATGAGGGTCCTTCACGTTCACCATGCC
CTCCAGGCGGTGTGCGGCATAGAAGATCACACGGCAGTCACCCTCATGCC
CGTAGGAAGGACGCTTGGCGCACGTCACCTCCTGGCAACGAGCACTCCGG
TGCCTCTTTGCCTTCGGTGCCGCGGAACCGCCTACGTGATTGCCGGGAAG
TGGAGCCACAGGCACTGTCGCCGCCGGGTGGGTCCACCTGCGCATCCCTC
TTCACCCCCGCATGCACCTCCACCCGGGGAAGCTTTCTGCCCGGCACCCC
AGAGCTAGCCGCTGTGTCCCGCCCAGATGCA
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Coding sequence (CDS) from alignment at S-ischiensis_contig107:185457..186887+

>mRNA_S-ischiensis_contig107.1907.1 ID=mRNA_S-ischiensis_contig107.1907.1|Name=mRNA_S-ischiensis_contig107.1907.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1710bp|location=Sequence derived from alignment at S-ischiensis_contig107:185457..186887+ (Schizocladia ischiensis KU_0333)
ATGCGGGCTGAACACGTCTACCATGCCCTCCAAGCGGTGTGCGGCACAGA
ACGTAGCCCCGCATTCACCCTCATTCCCGTAGTTTGGCTGCTTGGTGCAT
GTCGCCTCTTGGTAACGCGAACTGATCACGTCCACCATGCCCTCCAAGCG
GTGCGCGGCACAGAAGGTCGCGCGGCGGTCATCCTCATTCTCGAAGGATG
TTTTCTTGGCGCACTTCGCCTACTGGCAACGCCGGTTGGCCACGTCCACC
ATGCCCTCCAAGCGATGCGCGGCACAGAAGGTTGCACGGTGGTCACCATC
GTTGCCGTAGGATGGCCGCTTGGTGCACGTCGCCTCCTGGCACCGCGGGC
TGACCAAGTTCACCATGCCATCCAAGCGGTGCACGGCACAGTAGGTCGCC
CGGCGGTCACCCTCCTTCCCGTAGGATGGCACCTTGTTGCACGTCGCCTC
CTGGCAACGAGCGCGCTTCACGTTCACCATGCCCACCATGCAGTGTGCGG
CACAAAACACAGCATGGCGGTCACCCTCGTTCCCGTAGGATGGCCGCTTG
TTGCACGTCCCCTCCTGACAATGAGGGTCCTTCACGTTCACCATGCCCTC
CAGGCGGTGTGCGGCATAGAAGATCACACGGCAGTCACCCTCATGCCCGT
AGGAAGGACGCTTGGCGCACGTCACCTCCTGGCAACGAGCACTCCGGTGC
CTCTTTGCCTTCGGTGCCGCGGAACCGCCTACGTGATTGCCGGGAAGTGG
AGCCACAGGCACTGTCGCCGCCGGGTGGGTCCACCTGCGCATCCCTCTTC
ACCCCCGCATGCACCTCCACCCGGGGAAGCTTTCTGCCCGGCACCCCAGA
GCTAGATGCGGGCTGAACACGTCTACCATGCCCTCCAAGCGGTGTGCGGC
ACAGAACGTAGCCCCGCATTCACCCTCATTCCCGTAGTTTGGCTGCTTGG
TGCATGTCGCCTCTTGGTAACGCGAACTGATCACGTCCACCATGCCCTCC
AAGCGGTGCGCGGCACAGAAGGTCGCGCGGCGGTCATCCTCATTCTCGAA
GGATGTTTTCTTGGCGCACTTCGCCTACTGGCAACGCCGGTTGGCCACGT
CCACCATGCCCTCCAAGCGATGCGCGGCACAGAAGGTTGCACGGTGGTCA
CCATCGTTGCCGTAGGATGGCCGCTTGGTGCACGTCGCCTCCTGGCACCG
CGGGCTGACCAAGTTCACCATGCCATCCAAGCGGTGCACGGCACAGTAGG
TCGCCCGGCGGTCACCCTCCTTCCCGTAGGATGGCACCTTGTTGCACGTC
GCCTCCTGGCAACGAGCGCGCTTCACGTTCACCATGCCCACCATGCAGTG
TGCGGCACAAAACACAGCATGGCGGTCACCCTCGTTCCCGTAGGATGGCC
GCTTGTTGCACGTCCCCTCCTGACAATGAGGGTCCTTCACGTTCACCATG
CCCTCCAGGCGGTGTGCGGCATAGAAGATCACACGGCAGTCACCCTCATG
CCCGTAGGAAGGACGCTTGGCGCACGTCACCTCCTGGCAACGAGCACTCC
GGTGCCTCTTTGCCTTCGGTGCCGCGGAACCGCCTACGTGATTGCCGGGA
AGTGGAGCCACAGGCACTGTCGCCGCCGGGTGGGTCCACCTGCGCATCCC
TCTTCACCCCCGCATGCACCTCCACCCGGGGAAGCTTTCTGCCCGGCACC
CCAGAGCTAG
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