mRNA_S-ischiensis_contig107.1905.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig107.1905.1
Unique NamemRNA_S-ischiensis_contig107.1905.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig107.1905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig107contigS-ischiensis_contig107:165622..170324 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size496
Cds size492
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig107.1905.1prot_S-ischiensis_contig107.1905.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig107 165625..170324 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815569.829276-UTR-S-ischiensis_contig107:165621..1656241622815569.829276-UTR-S-ischiensis_contig107:165621..165624Schizocladia ischiensis KU_0333UTRS-ischiensis_contig107 165622..165624 +
1695739776.3998308-UTR-S-ischiensis_contig107:165621..1656241695739776.3998308-UTR-S-ischiensis_contig107:165621..165624Schizocladia ischiensis KU_0333UTRS-ischiensis_contig107 165622..165624 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815569.8498197-CDS-S-ischiensis_contig107:165624..1656981622815569.8498197-CDS-S-ischiensis_contig107:165624..165698Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 165625..165698 +
1695739776.407916-CDS-S-ischiensis_contig107:165624..1656981695739776.407916-CDS-S-ischiensis_contig107:165624..165698Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 165625..165698 +
1622815569.8620963-CDS-S-ischiensis_contig107:167372..1675411622815569.8620963-CDS-S-ischiensis_contig107:167372..167541Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 167373..167541 +
1695739776.4158933-CDS-S-ischiensis_contig107:167372..1675411695739776.4158933-CDS-S-ischiensis_contig107:167372..167541Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 167373..167541 +
1622815569.8716772-CDS-S-ischiensis_contig107:169327..1694651622815569.8716772-CDS-S-ischiensis_contig107:169327..169465Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 169328..169465 +
1695739776.4236734-CDS-S-ischiensis_contig107:169327..1694651695739776.4236734-CDS-S-ischiensis_contig107:169327..169465Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 169328..169465 +
1622815569.881754-CDS-S-ischiensis_contig107:170213..1703241622815569.881754-CDS-S-ischiensis_contig107:170213..170324Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 170214..170324 +
1695739776.4315536-CDS-S-ischiensis_contig107:170213..1703241695739776.4315536-CDS-S-ischiensis_contig107:170213..170324Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 170214..170324 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig107.1905.1

>prot_S-ischiensis_contig107.1905.1 ID=prot_S-ischiensis_contig107.1905.1|Name=mRNA_S-ischiensis_contig107.1905.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=164bp
MYKAARAMLRQGGAVATEGALRKLRDALELDERDAHSWLLLARTEERRGR
VEEARQVFGEAVQRCPNSVHMWQAWGMLEHKFGDLELARRLFSRGLEVDP
GNEYVCHAWGLMEQRVDNLDRARELFQLSRPKAAVTSAHGELEASCGNLE
AARGVFEAGLSFFR
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mRNA from alignment at S-ischiensis_contig107:165622..170324+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig107.1905.1 ID=mRNA_S-ischiensis_contig107.1905.1|Name=mRNA_S-ischiensis_contig107.1905.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4703bp|location=Sequence derived from alignment at S-ischiensis_contig107:165622..170324+ (Schizocladia ischiensis KU_0333)
GCCATGTATAAGGCGGCGAGGGCGATGCTCCGGCAGGGGGGGGCGGTGGC
GACGGAGGGCGCGCTGCGGAAGCTCAGGTGACTTGCTGCCCGTGTTATAC
TCGTACGTGTATATAGATATACTTCCAAGTACGAGTATCTACTTCCGGAA
ATATGTGTGTACGCATTGGCTTGTCTTGCGACATAACGAGTAGAGTGCAA
TACCATATATAGTGTGATCGAGCCGTTAGAGGTCTAGCACTTGGAGAGCG
GTGGTGTACTACAGTATATACGGATGAGTACAGTGGTATGTACTCACGTC
GTGCTTGCCGTAGTCCCGAGACCATTCACCACGCGCCTCGGTCGAGACGG
AGAAGTGCATGTACAACAACTACTGCAGTATGTATGAAGCATGTACTTCG
TACTTGAGTACGGTACTACTTTTGCACTCTTTTTGTTTGCTCTAGTCCGG
AGGCCGCTACACGCCATACTTTCACTCTCCCGAGCATGGGGAACTCACAG
CATGTACGCCATGCATGTACTCACACCTAACAGTGCTTGCCGTAGTCCCG
AGACCATCGACCCACGCACCTCGACCGAGATGGGGCAGCCCCCCTCCCTC
CCCCGGCAAAAACAGGGTGGGAGGGGGGGGCACAGCACTTGCAGTTCACA
CGGCATATATATATATATATGTACTCACGTTGCTCTGTCTCGACAGAGGC
GCGTGGTCAATGGTCTCAGGACTACGGCAGCACCAGGTTAGTACATACTC
GTATATATATATATATATATATATACTCATATATATATATATATATATAT
ATATACTCATATATATATATATATATATATATATACGAGTATGTACTAAC
CTGGTGCTGCCGTAGTCCTGAGACCATTGACCACGCGCCTCGTGCTAGTA
TATAGTACTTTTGTCAACTTTTTTGTAGCACTGCGACGCCTATTTGTTTG
CACAGCACTTGCAGTACAAACAGCATATGGTTCTTACTTGTACATGGCCT
TTTTTTTTAACAACTGCGACGCCTATTTGTCGCTCTTGTGCTCTACTTGT
ACTCGAGTGCATCAACTTTTTTGTATTAACTGGAATTCCGTAGCAACTGC
AACACCTACTTGTCGCTGTTGTACTTGTACGTACAAGGGACACCCTGGAG
CTCAACGACCGCGACGCGCGCTCCTAACTACTTGGGTGCTCCAAAACTCA
CTCTCCTAACTACTTGGGTACTCCGAAACTCGCCCTCCTAACTACTTGGG
TACTCCGAAACCTGCTTCCCTAACTACTTGGGTACTCCGAAACTCGCTCT
CCTAGCTGCTTGGGTACTCCGAAACTCACCCTCCTAACTACCTGGGTACT
CCGAAACTCGCTCCCTAACTACTCAGGTACTCCGAAACTCGCTCTCCTAG
CTACTTGGGTACTCCGAAGCTCGCACTCCTAACTACCTGGGTACTCTGAA
ACCCGCTCCCCTAGCTACTTGGGTACTCCGAAACTCGCTCCCTAACTACT
TGGGTACTCCGAAACTCGCCCTCCTAGCTACCTGGGTACTCTGAAACCCG
CTCCCCTAACTACTTGGGTACTCCGAAACTCGCTCTCCTAACTACTTGGG
TACTCCGAAACTCACCCTCCTAACTACTTGGGTACTCCGAAACTCGTTCT
CCCTAACTACTTGGGTACTCCGAATCTCGCTCTCAAAACTGCTGGAGTAG
GTACTCTTGAACTCACTCCAATCCTGTTGTACTCCTAACTACTACTAATA
GGGATGCCCTGGAGCTTGACGAGCGCGACGCGCACTCCTGGCTGCTCCTG
GCAAGGACGGAGGAGCGCCGGGGGAGGGTGGAGGAGGCCCGACAGGTCTT
TGGGGAGGCGGTGCAGAGGTGTCCCAACAGCGTACACATGTGGCAGGCGT
GGGGGATGCTGGAGCACAAGGTGCGTGGGCGGTAAAACCCTAACTTCGAG
GTTAGTTAGGGTCTAACTAGCCTTCATTTTAGGTCTAATTGCCCCTAGTT
ACCGTAAAGGACGGGGAATAAGGACCCCCCCTTGGAAAAGGACCCCCTCG
ACAAGTTGTTGGGATCATCAAAATTATCACCGGGGTGACTTTGAATAGGG
ACCCCCCTTGCCACCCTGGCCCACCAGCTTGAACCAGGCCGCCACCGTGC
CAGCACCGCTGGCGTGCGATTAGGTAGGATCGGGAGTTCAAAGCAAGAGA
CCGTACGGTAGGAGCAGCTACCGAGCCACCGAGTACGGTGTGTGAAATTG
TGAGCCGCACTCAGAGTGGGCCCGGGAGACACTTGTAGTCACATTTTTTA
AGTGCTTGAAAATTCCCAACAAACAACAGCACAACTTTATTACTACGAAC
CATGCCTCCGAACAGGGGGCGTGGTCATCCCTGCCTCCGCCGTCGCCTTC
GCCGTCGCATCGTTGTGGGGCTGCGGAGCACCAGGTCTGCGCCACCACTC
GCGAGGCCGACCTCCCGATTTTCGGAACATATCGGCCCCCACATATCGAC
CTCCGCCTCCCGTTATACACCCCCCCCGGTGACAACGACCGTGAGTGCGA
AATATCGCCCCCCCCCCATATCGACCCCGTCGTTACCGAGACGCGCCGGG
CTGGTCGTTATCGCGGGGGTGACGTTGGATAAGGAAGGGACTTAGAATAC
CAACCCCCTGCGGTAGTTTTTGCGCCCCAATAATGTATTGCCGGGGGATC
CTTGTTCCCCATCCTTTACGGTAGCCTTCATTTTGGTCTAATTACCCCAT
ATTAGAGGTGTCCCAACAGTGTGCACATCTGGCAGGCGCGGGGGATGCTG
GAGTACAAGGTCCGTGGGCAGCAGTGATGGAATATCTAAGCAAATCAACA
TATTTATCGACAATGCTGACCTACAGTACATATCTATCAATAGTCGATAT
TTGATACTTTGACCCACACTAAATCCAAGTAGAAGTAGCTAGTAGTGGCA
CCCATAAAATCAGTCGAGCCCGATAGCTATCTACTGATCGATATTCCATC
ACTGCAGTGTACAGTACTGCTGGACGGGAATGGGCCCCTCTCTCTGTTCG
CTGTCTCTCTCTATATATATACACTGTATACTTCGAAGTATATTGCTTCC
AAGCACTGCTGTACATACTCACACCTTGCTTGCCATAGTCCCGAGACAAG
TGACCGCGCGCCGTTGAGGAAGCAATTAAAGCATATGTGCAGTGCTGTCT
CGGCTGAGGCTATGCGACAAGGGTCAATGGTCTCGGGGCCGTTGTACGGC
CAGCACTGTTAACCCTTTTACCCCTGTGGTCTGTATATTCATAGGGTTTT
AGTGTGTAAGTCCAATTTCGCAGGGGTAAAAGGGTTAAGGTGTGAGCGCA
CAGCACACATCTGCTCTACATACTGTATACTGTACTGTGCTGTACTGTAT
TGTACTGTACTGCAGCGCGCATGAACTCCTCCGAGCGGAACTCGCCGTAA
CTATAAATTGTGCAGTTTGTCGGCCTGGAGCTTGTATGCCGTACTGTACT
GTACTGTACCGCGCATTAACTCTTCAGAGGGGAGCTTGCCGCCATAACTC
ATGCAAGTTTGGGGACCTGGAGCTTGCGCGGCGGCTCTTCTCGAGGGGGC
TGGAGGTGGACCCACTGTATACTGTACTGTAGTGTACTATGCTGTACTGT
ACTGTACTGTACTGTAGTGCGCGTAAACTCACCGTATACTGTACTGTATT
GTACAGTTTGGGGACCTGGAGCTTGCGCGGCGGCTCTTCTCGAGGGGACT
GGAGGTGGACCCGGGCAACGAGTACGTGTGCCACGCATGGGGCCTGATGG
AGCAGCGGGTAGACAACCTGGACCGGGCCAGGGAGCTCTTCCAGGTGTGT
GTGTGCCCGTGTACTACTGTACTGTACCGTACTGTATTGTACTGTACGGT
ACAGTACTGTACTGCACGGTAGTGTACTGCAGCAGGTAGACAACCTGGAC
CGGGCCAGGGAGCTCTTCCAGGTGTGTGCTACTGTAAACTACTGTACACT
ACTGTACACTAGAGTGTACTGACTGTACTGTACGGTACAGTACGGTCCGG
TGTGCGCCCGTGTGCTACAGTAAACTGCTTTGAAGTACTGTGTACACTAC
TGTGTACATACTGTACGGTATATGTACTTTACTGTACAACCTGGACCGGG
TGAGGGAGCTCTTGCAGGTGTGTGCCTGTGTGCTACGGTATACTACTGTA
CTGTACCGTAAAGTAGTGTACTGCACTGTACACTAAAGTACTGTACTGTA
CTGCACTGTACGGTACAGTGCAGTACTGCTGCGTCCCACAGTGGGAAGTT
GGGGTGTGTGAAGCTTGACAGGTGCAGGTGTGTAGGGTCGATGTGCAAGT
TGTACTACCGAAACAGTTTTGCAGTGGGGCGTACCCGCTTGTTCTCGGGA
ACCATGATGCATCAGAACAAGTCGGCCACCTTGACTGAGCTACAGAAACG
CCTTCACACAGCACTTTTTTGGGTCGACCGCTGTTTTTTTCTGAACCAGT
TGTCGTCGTTTTGAACACCAGGCCCGGCCCCAAAGTACCCGTAATATACC
CCCCCCCCCCCCGCCCCCCCGCCCCGCCCCACCCCGCACCAGCTGTCCCG
GCCCAAGGCGGCGGTGACGAGTGCGCATGGGGAGTTGGAGGCATCTTGCG
GGAACCTCGAGGCGGCTCGAGGTGTGTTTGAGGCCGGCCTCAGCTTTTTC
CGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig107:165622..170324+

>mRNA_S-ischiensis_contig107.1905.1 ID=mRNA_S-ischiensis_contig107.1905.1|Name=mRNA_S-ischiensis_contig107.1905.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=984bp|location=Sequence derived from alignment at S-ischiensis_contig107:165622..170324+ (Schizocladia ischiensis KU_0333)
ATGTATAAGGCGGCGAGGGCGATGCTCCGGCAGGGGGGGGCGGTGGCGAC
GGAGGGCGCGCTGCGGAAGCTCAGATGTATAAGGCGGCGAGGGCGATGCT
CCGGCAGGGGGGGGCGGTGGCGACGGAGGGCGCGCTGCGGAAGCTCAGGG
ATGCCCTGGAGCTTGACGAGCGCGACGCGCACTCCTGGCTGCTCCTGGCA
AGGACGGAGGAGCGCCGGGGGAGGGTGGAGGAGGCCCGACAGGTCTTTGG
GGAGGCGGTGCAGAGGTGTCCCAACAGCGTACACATGTGGCAGGCGTGGG
GGATGCTGGAGCACAAGGGATGCCCTGGAGCTTGACGAGCGCGACGCGCA
CTCCTGGCTGCTCCTGGCAAGGACGGAGGAGCGCCGGGGGAGGGTGGAGG
AGGCCCGACAGGTCTTTGGGGAGGCGGTGCAGAGGTGTCCCAACAGCGTA
CACATGTGGCAGGCGTGGGGGATGCTGGAGCACAAGTTTGGGGACCTGGA
GCTTGCGCGGCGGCTCTTCTCGAGGGGACTGGAGGTGGACCCGGGCAACG
AGTACGTGTGCCACGCATGGGGCCTGATGGAGCAGCGGGTAGACAACCTG
GACCGGGCCAGGGAGCTCTTCCAGTTTGGGGACCTGGAGCTTGCGCGGCG
GCTCTTCTCGAGGGGACTGGAGGTGGACCCGGGCAACGAGTACGTGTGCC
ACGCATGGGGCCTGATGGAGCAGCGGGTAGACAACCTGGACCGGGCCAGG
GAGCTCTTCCAGCTGTCCCGGCCCAAGGCGGCGGTGACGAGTGCGCATGG
GGAGTTGGAGGCATCTTGCGGGAACCTCGAGGCGGCTCGAGGTGTGTTTG
AGGCCGGCCTCAGCTTTTTCCGCCTGTCCCGGCCCAAGGCGGCGGTGACG
AGTGCGCATGGGGAGTTGGAGGCATCTTGCGGGAACCTCGAGGCGGCTCG
AGGTGTGTTTGAGGCCGGCCTCAGCTTTTTCCGC
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