mRNA_S-ischiensis_contig107.1904.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig107.1904.1
Unique NamemRNA_S-ischiensis_contig107.1904.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig107.1904.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig107contigS-ischiensis_contig107:137147..137844 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size698
Cds size411
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig107.1904.1prot_S-ischiensis_contig107.1904.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig107 137233..137643 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815570.0998147-UTR-S-ischiensis_contig107:137146..1372321622815570.0998147-UTR-S-ischiensis_contig107:137146..137232Schizocladia ischiensis KU_0333UTRS-ischiensis_contig107 137147..137232 +
1695739776.507405-UTR-S-ischiensis_contig107:137146..1372321695739776.507405-UTR-S-ischiensis_contig107:137146..137232Schizocladia ischiensis KU_0333UTRS-ischiensis_contig107 137147..137232 +
1622815570.126517-UTR-S-ischiensis_contig107:137643..1378441622815570.126517-UTR-S-ischiensis_contig107:137643..137844Schizocladia ischiensis KU_0333UTRS-ischiensis_contig107 137644..137844 +
1695739776.5235622-UTR-S-ischiensis_contig107:137643..1378441695739776.5235622-UTR-S-ischiensis_contig107:137643..137844Schizocladia ischiensis KU_0333UTRS-ischiensis_contig107 137644..137844 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815570.1148894-CDS-S-ischiensis_contig107:137232..1376431622815570.1148894-CDS-S-ischiensis_contig107:137232..137643Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 137233..137643 +
1695739776.5155342-CDS-S-ischiensis_contig107:137232..1376431695739776.5155342-CDS-S-ischiensis_contig107:137232..137643Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 137233..137643 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig107.1904.1

>prot_S-ischiensis_contig107.1904.1 ID=prot_S-ischiensis_contig107.1904.1|Name=mRNA_S-ischiensis_contig107.1904.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=137bp
MQPVHSGFQIARFVWAARPEIARRAGSAHKAGRLWVARRQQRRRFRPQPD
PQMAQYGRKRAPGPQFPPCGASLPNPPNISFSRGPAGAQNSGPGGQPGGP
TRPQVRGLVGNPECTEWCASKEDVLQLQLLATTTYW*
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mRNA from alignment at S-ischiensis_contig107:137147..137844+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig107.1904.1 ID=mRNA_S-ischiensis_contig107.1904.1|Name=mRNA_S-ischiensis_contig107.1904.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=698bp|location=Sequence derived from alignment at S-ischiensis_contig107:137147..137844+ (Schizocladia ischiensis KU_0333)
CCCCCTCAGACGGCAGCAGACGTGCCAGCACTGCCGCATCCTGCACAGGT
GCCGCGGACACACAGCGATTCGTTAAGGGTGCGGCAATGCAGCCAGTGCA
CTCAGGGTTTCAGATAGCAAGGTTTGTTTGGGCGGCCCGCCCAGAAATTG
CCCGAAGGGCCGGATCCGCCCACAAGGCGGGAAGGCTTTGGGTGGCTCGC
CGCCAACAACGACGGAGGTTCCGCCCGCAACCTGACCCTCAGATGGCCCA
ATATGGGCGTAAAAGGGCCCCTGGCCCGCAATTCCCCCCCTGCGGGGCTT
CTTTACCCAACCCCCCCAACATCAGCTTCAGCCGGGGCCCGGCGGGTGCC
CAAAACTCCGGGCCTGGTGGGCAGCCCGGGGGCCCGACCCGCCCACAAGT
CCGGGGCCTTGTCGGAAACCCTGAATGCACTGAATGGTGTGCTTCCAAGG
AGGATGTGTTACAGCTGCAACTACTGGCTACTACTACATACTGGTAACCA
ACAAGGTCAACGGGGAGGGTTTAGTACAGACCTGGACGGCGGTTGTGGCG
CCCATGCGCAGGGAGGGGACCATTGCGTGGGCTAGTAAGTACTTCGAAGT
ACTACCATGTACTACTCGGAACAGTAGTACATCAACATGTACAATCACAT
CACAACCACAACAGTAGTGCGAAGTGCATCCAACACCACAGGGTTTAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig107:137147..137844+

>mRNA_S-ischiensis_contig107.1904.1 ID=mRNA_S-ischiensis_contig107.1904.1|Name=mRNA_S-ischiensis_contig107.1904.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=822bp|location=Sequence derived from alignment at S-ischiensis_contig107:137147..137844+ (Schizocladia ischiensis KU_0333)
ATGCAGCCAGTGCACTCAGGGTTTCAGATAGCAAGGTTTGTTTGGGCGGC
CCGCCCAGAAATTGCCCGAAGGGCCGGATCCGCCCACAAGGCGGGAAGGC
TTTGGGTGGCTCGCCGCCAACAACGACGGAGGTTCCGCCCGCAACCTGAC
CCTCAGATGGCCCAATATGGGCGTAAAAGGGCCCCTGGCCCGCAATTCCC
CCCCTGCGGGGCTTCTTTACCCAACCCCCCCAACATCAGCTTCAGCCGGG
GCCCGGCGGGTGCCCAAAACTCCGGGCCTGGTGGGCAGCCCGGGGGCCCG
ACCCGCCCACAAGTCCGGGGCCTTGTCGGAAACCCTGAATGCACTGAATG
GTGTGCTTCCAAGGAGGATGTGTTACAGCTGCAACTACTGGCTACTACTA
CATACTGGTAAATGCAGCCAGTGCACTCAGGGTTTCAGATAGCAAGGTTT
GTTTGGGCGGCCCGCCCAGAAATTGCCCGAAGGGCCGGATCCGCCCACAA
GGCGGGAAGGCTTTGGGTGGCTCGCCGCCAACAACGACGGAGGTTCCGCC
CGCAACCTGACCCTCAGATGGCCCAATATGGGCGTAAAAGGGCCCCTGGC
CCGCAATTCCCCCCCTGCGGGGCTTCTTTACCCAACCCCCCCAACATCAG
CTTCAGCCGGGGCCCGGCGGGTGCCCAAAACTCCGGGCCTGGTGGGCAGC
CCGGGGGCCCGACCCGCCCACAAGTCCGGGGCCTTGTCGGAAACCCTGAA
TGCACTGAATGGTGTGCTTCCAAGGAGGATGTGTTACAGCTGCAACTACT
GGCTACTACTACATACTGGTAA
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