mRNA_S-ischiensis_contig107.1897.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig107.1897.1
Unique NamemRNA_S-ischiensis_contig107.1897.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig107.1897.1 vs. uniprot
Match: D8LSS7_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSS7_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 4.590e-5
Identity = 27/58 (46.55%), Postives = 39/58 (67.24%), Query Frame = 2 
Query:  143 LLRRLLAVVGVGVPPALAYIVITRLGGRKRSLPLEEVPFSAFLNDARAGRLAEVRVLD 316
            LLR+LL +  + +PPALA+ +   +G R+R++P  E+ FSAF  DA  GRL EV + D
Sbjct:   17 LLRQLLLLTSLSLPPALAFAIRKIIGARRRAMP--ELSFSAFWRDASLGRLQEVLISD 72
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig107.1897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSS7_ECTSI4.590e-546.55AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig107contigS-ischiensis_contig107:53081..53432 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size353
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815570.0500197-CDS-S-ischiensis_contig107:53080..534311622815570.0500197-CDS-S-ischiensis_contig107:53080..53431Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 53081..53431 +
1695739776.499279-CDS-S-ischiensis_contig107:53080..534311695739776.499279-CDS-S-ischiensis_contig107:53080..53431Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 53081..53431 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig107.1897.1prot_S-ischiensis_contig107.1897.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig107 53081..53431 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig107.1897.1

>prot_S-ischiensis_contig107.1897.1 ID=prot_S-ischiensis_contig107.1897.1|Name=mRNA_S-ischiensis_contig107.1897.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=117bp
LLGALHQYDHGGCGGIVQPRWCWDVRDAGPAAHLVKRCNQDAPPNDISTA
SLAGCGWRWRPPRPRLHRDHTTGRAEAVIAARRSPLLRVPQRCTRWEIGR
GESAGRPGGRTTLWSQV
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mRNA from alignment at S-ischiensis_contig107:53081..53432+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig107.1897.1 ID=mRNA_S-ischiensis_contig107.1897.1|Name=mRNA_S-ischiensis_contig107.1897.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=352bp|location=Sequence derived from alignment at S-ischiensis_contig107:53081..53432+ (Schizocladia ischiensis KU_0333)
CTCCTTGGTGCACTGCACCAATACGACCACGGTGGGTGCGGCGGCATCGT
GCAGCCCCGCTGGTGCTGGGACGTTCGAGACGCGGGGCCAGCTGCTCATC
TGGTGAAGCGCTGCAACCAGGATGCCCCCCCCAACGACATCTCTACTGCG
TCGCTTGCTGGCTGTGGTTGGCGTTGGCGTCCCCCCCGCCCTCGCCTACA
TCGTGATCACACGACTGGGCGGGCGGAAGCGGTCATTGCCGCTCGAAGAA
GTCCCCTTCTCCGCGTTCCTCAACGATGCACGCGCTGGGAGATTGGCCGA
GGTGAGAGTGCTGGACGTCCAGGGGGCCGCACCACACTGTGGAGCCAGGT
CC
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Coding sequence (CDS) from alignment at S-ischiensis_contig107:53081..53432+

>mRNA_S-ischiensis_contig107.1897.1 ID=mRNA_S-ischiensis_contig107.1897.1|Name=mRNA_S-ischiensis_contig107.1897.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=702bp|location=Sequence derived from alignment at S-ischiensis_contig107:53081..53432+ (Schizocladia ischiensis KU_0333)
CTCCTTGGTGCACTGCACCAATACGACCACGGTGGGTGCGGCGGCATCGT
GCAGCCCCGCTGGTGCTGGGACGTTCGAGACGCGGGGCCAGCTGCTCATC
TGGTGAAGCGCTGCAACCAGGATGCCCCCCCCAACGACATCTCTACTGCG
TCGCTTGCTGGCTGTGGTTGGCGTTGGCGTCCCCCCCGCCCTCGCCTACA
TCGTGATCACACGACTGGGCGGGCGGAAGCGGTCATTGCCGCTCGAAGAA
GTCCCCTTCTCCGCGTTCCTCAACGATGCACGCGCTGGGAGATTGGCCGA
GGTGAGAGTGCTGGACGTCCAGGGGGCCGCACCACACTGTGGAGCCAGGT
CCTCCTTGGTGCACTGCACCAATACGACCACGGTGGGTGCGGCGGCATCG
TGCAGCCCCGCTGGTGCTGGGACGTTCGAGACGCGGGGCCAGCTGCTCAT
CTGGTGAAGCGCTGCAACCAGGATGCCCCCCCCAACGACATCTCTACTGC
GTCGCTTGCTGGCTGTGGTTGGCGTTGGCGTCCCCCCCGCCCTCGCCTAC
ATCGTGATCACACGACTGGGCGGGCGGAAGCGGTCATTGCCGCTCGAAGA
AGTCCCCTTCTCCGCGTTCCTCAACGATGCACGCGCTGGGAGATTGGCCG
AGGTGAGAGTGCTGGACGTCCAGGGGGCCGCACCACACTGTGGAGCCAGG
TC
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