mRNA_S-ischiensis_contig107.1891.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig107.1891.1
Unique NamemRNA_S-ischiensis_contig107.1891.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig107.1891.1 vs. uniprot
Match: D8LQX2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQX2_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 2.840e-16
Identity = 61/154 (39.61%), Postives = 81/154 (52.60%), Query Frame = 2 
Query:   23 MALTGRRVEVFWPPEEDDTAGEWYRGTLDKFKDGKGYHVLYDDGDEEWVGE-VDG-ENIKLL----------EEHTDEGDGFQEDGGNSTGPGQIERAEHTLGYTGDSFEEPQSPCPGDADVAPVL--DPGFPARPSPFECKSEAAVLRSDQAL 442
            MA  G+RVEVFWPPE DDT G WY G LD + D  GYHV YDDGDEE +GE +DG ++I LL            +  EG   + D  +  G  + E     +G  G +  EP SP P  + +A +   + G PA  SP +C       RS+ ++
Sbjct:    1 MAHVGQRVEVFWPPEGDDTEGNWYCGELDGYDDAAGYHVTYDDGDEEVLGEQIDGRDDIHLLPLWSPPDGGDNRNPPEGVAHRRD--DKPGVPEEEGENGRIGQRGKATSEPDSPTPTGSGLAAMSYREIGRPA--SPPDCDGSNTSPRSNLSM 150
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig107.1891.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQX2_ECTSI2.840e-1639.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig107contigS-ischiensis_contig107:16543..17393 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size473
Cds size450
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig107.1891.1prot_S-ischiensis_contig107.1891.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig107 16543..17371 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815570.2231233-CDS-S-ischiensis_contig107:16542..168061622815570.2231233-CDS-S-ischiensis_contig107:16542..16806Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 16543..16806 -
1695739776.5720875-CDS-S-ischiensis_contig107:16542..168061695739776.5720875-CDS-S-ischiensis_contig107:16542..16806Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 16543..16806 -
1622815570.2393854-CDS-S-ischiensis_contig107:17101..172191622815570.2393854-CDS-S-ischiensis_contig107:17101..17219Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 17102..17219 -
1695739776.583585-CDS-S-ischiensis_contig107:17101..172191695739776.583585-CDS-S-ischiensis_contig107:17101..17219Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 17102..17219 -
1622815570.2517157-CDS-S-ischiensis_contig107:17303..173711622815570.2517157-CDS-S-ischiensis_contig107:17303..17371Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 17304..17371 -
1695739776.6009774-CDS-S-ischiensis_contig107:17303..173711695739776.6009774-CDS-S-ischiensis_contig107:17303..17371Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 17304..17371 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815570.261672-UTR-S-ischiensis_contig107:17371..173931622815570.261672-UTR-S-ischiensis_contig107:17371..17393Schizocladia ischiensis KU_0333UTRS-ischiensis_contig107 17372..17393 -
1695739776.6123257-UTR-S-ischiensis_contig107:17371..173931695739776.6123257-UTR-S-ischiensis_contig107:17371..17393Schizocladia ischiensis KU_0333UTRS-ischiensis_contig107 17372..17393 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig107.1891.1

>prot_S-ischiensis_contig107.1891.1 ID=prot_S-ischiensis_contig107.1891.1|Name=mRNA_S-ischiensis_contig107.1891.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=150bp
MALTGRRVEVFWPPEEDDTAGEWYRGTLDKFKDGKGYHVLYDDGDEEWVG
EVDGENIKLLEEHTDEGDGFQEDGGNSTGPGQIERAEHTLGYTGDSFEEP
QSPCPGDADVAPVLDPGFPARPSPFECKSEAAVLRSDQALHAIEGDLSGQ
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mRNA from alignment at S-ischiensis_contig107:16543..17393-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig107.1891.1 ID=mRNA_S-ischiensis_contig107.1891.1|Name=mRNA_S-ischiensis_contig107.1891.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=851bp|location=Sequence derived from alignment at S-ischiensis_contig107:16543..17393- (Schizocladia ischiensis KU_0333)
TGGGTGTGTGCAGCTGCTGCCGATGGCCTTGACTGGCCGTCGCGTGGAGG
TCTTCTGGCCTCCCGAAGAAGATGACACCGCCGGGGAATGGTAAGGCTGT
GGCAGGCTCCGCTGTCCTTGCATTGAGCCTTTTTGCCGGTTTGTTTTCCT
TGACATCGCTCTTCCCCGCGGCAGGTACCGCGGCACGCTCGACAAGTTCA
AGGATGGCAAGGGCTACCACGTCCTCTACGACGACGGAGATGAAGAATGG
GTAGGAGAGGTGGACGGGGAAAACATCAAACTGCTGGAAGAGGTATAAAC
GCACAGAAGCTGCATGATCCGCTAGTACACGGCCGGGGCAGCCTTGCTGC
TCTGTCTCAATTTACGTTGGGTTTGCAAGCCTTGCAGCTGGGGGTCTAAC
GATTCAGCCCAAAGGCAATCAGGCCTGGCGGAGACCTTAATGAACGGCTG
ACATGGCCCTGGGCCCGAACACTGATTGTAGAACTCTCGTATACCCTACC
CTCCCGTACTGTAGGAGGCTTACCCCCACCCAGAGCACCCGTACGGACGA
CCATCTCAAGCCAACTCCGCAACTCTAATCTCTACAGCACACTGACGAGG
GAGACGGCTTCCAGGAAGACGGCGGCAACTCGACGGGGCCGGGCCAGATT
GAGCGAGCAGAGCACACCCTGGGATACACGGGGGACTCTTTTGAGGAGCC
GCAGTCCCCGTGTCCCGGAGATGCAGACGTTGCGCCGGTCCTTGACCCTG
GTTTTCCGGCCCGTCCAAGCCCGTTTGAGTGCAAGAGTGAGGCAGCAGTG
CTGCGCTCGGATCAGGCCTTGCACGCGATTGAGGGAGATTTGTCCGGACA
G
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Coding sequence (CDS) from alignment at S-ischiensis_contig107:16543..17393-

>mRNA_S-ischiensis_contig107.1891.1 ID=mRNA_S-ischiensis_contig107.1891.1|Name=mRNA_S-ischiensis_contig107.1891.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=900bp|location=Sequence derived from alignment at S-ischiensis_contig107:16543..17393- (Schizocladia ischiensis KU_0333)
ATGGCCTTGACTGGCCGTCGCGTGGAGGTCTTCTGGCCTCCCGAAGAAGA
TGACACCGCCGGGGAATGATGGCCTTGACTGGCCGTCGCGTGGAGGTCTT
CTGGCCTCCCGAAGAAGATGACACCGCCGGGGAATGGTACCGCGGCACGC
TCGACAAGTTCAAGGATGGCAAGGGCTACCACGTCCTCTACGACGACGGA
GATGAAGAATGGGTAGGAGAGGTGGACGGGGAAAACATCAAACTGCTGGA
AGAGGTACCGCGGCACGCTCGACAAGTTCAAGGATGGCAAGGGCTACCAC
GTCCTCTACGACGACGGAGATGAAGAATGGGTAGGAGAGGTGGACGGGGA
AAACATCAAACTGCTGGAAGAGCACACTGACGAGGGAGACGGCTTCCAGG
AAGACGGCGGCAACTCGACGGGGCCGGGCCAGATTGAGCGAGCAGAGCAC
ACCCTGGGATACACGGGGGACTCTTTTGAGGAGCCGCAGTCCCCGTGTCC
CGGAGATGCAGACGTTGCGCCGGTCCTTGACCCTGGTTTTCCGGCCCGTC
CAAGCCCGTTTGAGTGCAAGAGTGAGGCAGCAGTGCTGCGCTCGGATCAG
GCCTTGCACGCGATTGAGGGAGATTTGTCCGGACAGCACACTGACGAGGG
AGACGGCTTCCAGGAAGACGGCGGCAACTCGACGGGGCCGGGCCAGATTG
AGCGAGCAGAGCACACCCTGGGATACACGGGGGACTCTTTTGAGGAGCCG
CAGTCCCCGTGTCCCGGAGATGCAGACGTTGCGCCGGTCCTTGACCCTGG
TTTTCCGGCCCGTCCAAGCCCGTTTGAGTGCAAGAGTGAGGCAGCAGTGC
TGCGCTCGGATCAGGCCTTGCACGCGATTGAGGGAGATTTGTCCGGACAG
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