mRNA_S-ischiensis_contig106.1882.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig106.1882.1 vs. uniprot
Match: A0A6H5JVE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVE7_9PHAE) HSP 1 Score: 255 bits (651), Expect = 1.910e-75 Identity = 133/219 (60.73%), Postives = 164/219 (74.89%), Query Frame = 1
Query: 562 NEHDDDIRQLALPGLVSLLVDPVLSLVDTAYIGR-VGASSLASLGPCTSVFHFCFNTFRALTQSTTVLVGRSLAAGDRDKAGQVAVQMVSLAFLICVAISGGLFTQTPRVPGFMGTGPASPLYEEAARYLKVRGLAAPAVLLITVCEGVFRGHNHTRTPARAALVAAFAHTVLDPLLIFKFNMGMAGAATATATAQYACLATYLTLLWRRARRGTMAIP 1215
++HD I LALP L+SLLVDP+LSLVDTAY+GR +GA SLA+LGPCTS+FHF FNTFR+LTQSTT LVG+SLAAG+ ++AGQ+ QM +A ++ V + L TQ P + MG GP + L+ EA+ YLKVR LAAPAVLLI V EGVFRGH TR PA AAL AA + +LDP+ +F +MG+AGAA ATA AQY +A Y +LWR AR G MA+P
Sbjct: 124 SQHDGQISALALPALMSLLVDPILSLVDTAYVGRGLGAISLAALGPCTSIFHFSFNTFRSLTQSTTALVGKSLAAGNEEEAGQIVQQMYVIACVLGVGLQVTLLTQAPSILALMGAGPKTALFREASGYLKVRALAAPAVLLIMVSEGVFRGHADTRAPAVAALSAAVTNILLDPVFMFTLSMGVAGAAGATAFAQYLAVAIYGAMLWRGAREGRMAVP 342
BLAST of mRNA_S-ischiensis_contig106.1882.1 vs. uniprot
Match: A0A7S3XLC3_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XLC3_HETAK) HSP 1 Score: 200 bits (508), Expect = 2.230e-55 Identity = 106/220 (48.18%), Postives = 137/220 (62.27%), Query Frame = 1
Query: 562 NEHDDDIRQLALPGLVSLLVDPVLSLVDTAYIGRVGASSLASLGPCTSVFHFCFNTFRALTQSTTVLVGRSLAAGDRDKAGQVAVQMVSLAFLICVAISGGLFTQTPRVPGFMGTGPASPLYEEAARYLKVRGLAAPAVLLITVCEGVFRGHNHTRTPARAALVAAFAHTVLDPLLIFKFNMGMAGAATATATAQYACLATYLTLLWRRARRGTMAIPLP 1221
NEHD DIR + LP LV ++DP +SL+D+AY GR+GA+SLA+LGPCTS+FHF FNTFRALT +TT LV + +A +++AGQV Q ++LA + + +G L MG G SPL A YLKVR L AP VL + EG+FRGH T TP A AA + LDP+L+F+ MG++GAA AT A+ Y LL RR + A P P
Sbjct: 2 NEHDRDIRDITLPALVGAMIDPAMSLIDSAYAGRLGATSLAALGPCTSIFHFSFNTFRALTFTTTALVAKYVAMNRKEQAGQVGKQSLALALTLGLLTAGALAALATPFLRLMGVGARSPLLPHALPYLKVRALVAPVVLCMMAMEGIFRGHGDTLTPLVAGAAAAAVNFSLDPILMFRLGMGVSGAAAATCIAEVVAAGIYGFLLLRRREQFGFAPPQP 221
BLAST of mRNA_S-ischiensis_contig106.1882.1 vs. uniprot
Match: W7TRZ3_9STRA (Mate efflux family protein (Fragment) n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRZ3_9STRA) HSP 1 Score: 181 bits (458), Expect = 1.560e-49 Identity = 104/215 (48.37%), Postives = 129/215 (60.00%), Query Frame = 1
Query: 562 NEHDDDIRQLALPGLVSLLVDPVLSLVDTAYIGRVGASSLASLGPCTSVFHFCFNTFRALTQSTTVLVGRSLAAGDRDKAGQVAVQMVSLAFLICVAISGGLFTQTPRVPGFMGTGPASPLYEEAARYLKVRGLAAPAVLLITVCEGVFRGHNHTRTPARAALVAAFAHTVLDPLLIFKFNMG------MAGAATATATAQYACLATYLTLLWRR 1188
+EHD +I +++LP L++LLVDP LSL DTAY+ R+G LA LGPCTS+FH FN FRA +QSTT LV +LA DRD+ V VQ + LA ++ +S L Q R+ MG S L YLKVR LAAPAVL++ V EG +RG T TP A + VLDP LIF+ G +AGAA AT AQY L YL LL+ R
Sbjct: 148 SEHDAEIARISLPALLTLLVDPFLSLCDTAYVSRLGTLPLACLGPCTSIFHLSFNGFRAFSQSTTALVSGALAQQDRDRVRAVVVQALVLACVLGTLVSAVLNVQATRILALMGAPAGSRLSATGLPYLKVRALAAPAVLMLMVGEGAYRGFADTLTPLPITFTVALVNLVLDPWLIFRGGWGGGRGWGVAGAAWATVAAQYVGLTAYLVLLFGR 362
BLAST of mRNA_S-ischiensis_contig106.1882.1 vs. uniprot
Match: A0A0G4EWE7_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EWE7_VITBC) HSP 1 Score: 181 bits (460), Expect = 4.580e-48 Identity = 103/215 (47.91%), Postives = 132/215 (61.40%), Query Frame = 1
Query: 580 IRQLALPGLVSLLVDPVLSLVDTAYIGR-VGASSLASLGPCTSVFHFCFNTFRALTQSTTVLVGRSLAAGDRDKAGQVAVQMVSLAFLICVAISGGLFTQTPRVPGFMGTGPAS--PLYEEAARYLKVRGLAAPAVLLITVCEGVFRGHNHTRTPARAALVAAFAHTVLDPLLIFKFNMGMAGAATATATAQYACLATYLTLLWRRARRGTMAIP 1215
IR L++P L+ LVDP LS +D Y+GR +GA+SLA+LGPC S+FH F FRAL QSTT LV R+L A D D+AG++ VQ LA + V I+ L + G MG G PL +A YLK R AAP+V+ V EG FRG T+TP A+L+AA + +LDP++IF G AGAA ATA AQYA TY L +RR + +P
Sbjct: 118 IRDLSVPALLGNLVDPALSTIDNIYVGRGLGATSLAALGPCISIFHVSFGIFRALMQSTTSLVARALGARDNDRAGELVVQSSFLAVGMGVIIAAALQLLCGPILGCMGVGAVGVDPLALDARAYLKARAWAAPSVVFTQVAEGAFRGFGDTKTPLFASLLAAVVNLILDPIMIFSCQWGTAGAAAATAVAQYAAALTYAVLFYRRRESMRLKVP 332
BLAST of mRNA_S-ischiensis_contig106.1882.1 vs. uniprot
Match: A0A4D9CNC1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CNC1_9STRA) HSP 1 Score: 164 bits (416), Expect = 1.460e-41 Identity = 89/183 (48.63%), Postives = 112/183 (61.20%), Query Frame = 1
Query: 562 NEHDDDIRQLALPGLVSLLVDPVLSLVDTAYIGRVGASSLASLGPCTSVFHFCFNTFRALTQSTTVLVGRSLAAGDRDKAGQVAVQMVSLAFLICVAISGGLFTQTPRVPGFMGTGPASPLYEEAARYLKVRGLAAPAVLLITVCEGVFRGHNHTRTPARAALVAAFAHTVLDPLLIFKFNMG 1110
+EHD +I +++LP L++LLVDP LSL DTAY+ R+G LA LGPCTS+FH FN FRA +QSTT LV +LA DRD+ V VQ + LA ++ +S L Q R+ MG S L YLKVR LAAPAVL++ V EG +RG T TP A + VLDP LIF +G
Sbjct: 156 SEHDAEIARISLPALLTLLVDPFLSLCDTAYVSRLGTLPLACLGPCTSIFHLSFNGFRAFSQSTTALVSGALAQQDRDRVRAVVVQALILACVLGTLVSAVLNIQATRILALMGAPAGSRLSATGLPYLKVRALAAPAVLMLMVGEGAYRGFADTLTPLPITFTVALVNLVLDPWLIFPGRVG 338
BLAST of mRNA_S-ischiensis_contig106.1882.1 vs. uniprot
Match: D7CWB4_TRURR (MATE efflux family protein n=1 Tax=Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 / RQ-24) TaxID=649638 RepID=D7CWB4_TRURR) HSP 1 Score: 160 bits (405), Expect = 3.300e-41 Identity = 99/226 (43.81%), Postives = 129/226 (57.08%), Query Frame = 1
Query: 553 FRKNEHDDDIRQLALPGLVSLLVDPVLSLVDTAYIGRVGASSLASLGPCTSVFHFCFNTFRALTQSTTVLVGRSLAAGDRDKAGQVAVQMVSLAFLICVAISGGL---FTQTPRVPGFMGTGPASPLYEEAARYLKVRGLAAPAVLLITVCEGVFRGHNHTRTPARAALVAAFAHTVLDPLLIFKFNMGMAGAATATATAQYACLATYLTLLWRRARRGTMAIPLP 1221
R N +D DI LALP L +L DP++SLVDTA++GR+G+ LA+LG T++F F F L TT +V RSL GDR+ AG+ VQ ++LA L +GGL F Q P G L A YL+VR LA PA+LLIT G FRG+ TRTP L + LDPL IF F G+AGAA AT AQ+A ++ +L+ R R +++ LP
Sbjct: 5 LRVNPYDRDILALALPALGTLAADPLVSLVDTAFVGRLGSVPLAALGVNTALFSLAFVVFNFLAYGTTPMVARSLGRGDREAAGRAVVQALTLALL-----AGGLAVAFLQLFAAPLLRLMGAGEELVGPALGYLRVRALAGPALLLITAGNGAFRGYQDTRTPFLLTLGLNLVNVALDPLFIFGFGWGLAGAAWATVVAQWAGALGFVWVLFARRRALGISVALP 225
BLAST of mRNA_S-ischiensis_contig106.1882.1 vs. uniprot
Match: A0A7S4A8V8_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4A8V8_9STRA) HSP 1 Score: 162 bits (409), Expect = 1.930e-40 Identity = 97/206 (47.09%), Postives = 122/206 (59.22%), Query Frame = 1
Query: 589 LALPGLVSLLVDPVLSLVDTAYIGRV--GASSLASLGPCTSVFHFCFNTFRALTQSTTVLVGRSLAAGDRDKAGQV----AVQMVSLAFLICVAISGGLFTQTPRVPGFMGTGPASPLYEEAARYLKVRGLAAPAVLLITVCEGVFRGHNHTRTPARAALVAAFAHTVLDPLLIFKFNMGMAGAATATATAQYACLATYLTLLWRR 1188
+ALP LV LLVDP+LS+VDTA+IGR GA+ LA+LG CTS+FH F FRA T +TT LVG + ++ + ++ A M L FL G + T M P SP++ A YL R AAPAV+ I V EG FRG+ +TP AA VAA + +LDPLL+F MGMAGAA ATA +Q A A Y LW+R
Sbjct: 196 IALPALVGLLVDPLLSIVDTAFIGRSAGGATDLAALGVCTSIFHMAFTVFRASTVATTSLVGSASTPEEKRQITKISFGFAFTMGILVFLALRLAGGHMLTG-------MALSPNSPVFHSACSYLFTRAWAAPAVVFIVVAEGAFRGNGDNKTPLVAASVAAVVNLILDPLLMFPMGMGMAGAAAATAISQLAAAAMYAWRLWKR 394
BLAST of mRNA_S-ischiensis_contig106.1882.1 vs. uniprot
Match: A0A7S4ER10_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ER10_9STRA) HSP 1 Score: 161 bits (408), Expect = 4.960e-40 Identity = 100/238 (42.02%), Postives = 140/238 (58.82%), Query Frame = 1
Query: 496 ASPTGKLPSAGARRVTGGIFRKNEHDDDIRQLALPGLVSLLVDPVLSLVDTAYIGRV---GASSLASLGPCTSVFHFCFNTFRALTQSTTVLVGRSLAAGDRDKAGQVAVQMVSLAFLICVAISGGLFTQTPRVPGFMGTGPASPLYEEAARYLKVRGLAAPAVLLITVCEGVFRGHNHTRTPARAALVAAFAHTVLDPLLIFK-FNMGMAGAATATATAQYACLATYLTLLWRRARR 1197
A +G P++ T ++ LALP L+ +L DP+LSL+DT +GR+ G S LA+LG CTS+FH FN FRA T +TT LVG+S + +R + Q+++ +L ++ + ++ L P G MG +SPL+ ++ YL R AAPAVLL TV EG FRG+ TR P A+ VAA + VLDPLL+ F+MG+ GAA ATA AQ+ LA Y +W R R+
Sbjct: 200 AKQSGSTPTSSLVTTTTNQIQRYRWTSKASALALPALIGMLADPLLSLMDTVCVGRLSVSGTSDLAALGACTSLFHLAFNAFRATTAATTSLVGKSNSKTERRQIVQISL---TLGLVLGLLVAAFLRLAGPWCLGCMGVPRSSPLFAPSSAYLFARCPAAPAVLLATVAEGAFRGYGDTRIPLLASGVAALLNAVLDPLLMLPPFSMGVKGAAQATAVAQFGALAVYG--VWLRKRK 432
BLAST of mRNA_S-ischiensis_contig106.1882.1 vs. uniprot
Match: A0A7S4R613_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R613_9STRA) HSP 1 Score: 159 bits (402), Expect = 1.360e-39 Identity = 97/219 (44.29%), Postives = 134/219 (61.19%), Query Frame = 1
Query: 589 LALPGLVSLLVDPVLSLVDTAYIGRVGASSLASLGPCTSVFHFCFNTFRALTQSTTVLVGRSLAAGDRDKAGQVAVQMV---SLAF--LICVAISGGLFTQTPRVPGFMGTGP-------------ASPLYEEAARYLKVRGLAAPAVLLITVCEGVFRGHNHTRTPARAALVAAFAHTVLDPLLIF-KFNMGMAGAATATATAQYACLATYLTLLWRR 1188
+ALP LV ++ DP+LSLVDT Y+ ++G+ LA+LG CTS+FH +N+FRA T +TT LV +LA D+ ++V SL F +I V +S L+ + MG P +SPLY A Y++ R LAAPAVLLITV EG FRG+ +T+ P A+ VAA A+ +LDP+L+F K +MG++GAA ATA +QY Y L+RR
Sbjct: 113 IALPALVGMIADPLLSLVDTLYVSKLGSIPLAALGTCTSIFHLSYNSFRATTTATTSLVATALAQDVDDEENHKEAKVVTATSLKFGVMIGVIVSLILWIGNDVILHAMGVPPPSSLHKTLKHPHPSSPLYSPATSYIRCRSLAAPAVLLITVAEGAFRGYANTKIPLLASAVAALANIILDPILMFGKCDMGVSGAALATAFSQYGAAFVYSFFLFRR 331
BLAST of mRNA_S-ischiensis_contig106.1882.1 vs. uniprot
Match: A0A448ZSW3_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZSW3_9STRA) HSP 1 Score: 158 bits (399), Expect = 1.970e-39 Identity = 93/206 (45.15%), Postives = 122/206 (59.22%), Query Frame = 1
Query: 589 LALPGLVSLLVDPVLSLVDTAYIGRV--GASSLASLGPCTSVFHFCFNTFRALTQSTTVLVGRSLAAGDRDKAGQV----AVQMVSLAFLICVAISGGLFTQTPRVPGFMGTGPASPLYEEAARYLKVRGLAAPAVLLITVCEGVFRGHNHTRTPARAALVAAFAHTVLDPLLIFKFNMGMAGAATATATAQYACLATYLTLLWRR 1188
+ALP L+ LL DP+LS+VDTA++GR GA LA+LG CTS+FH F FRA T +TT LVG + ++ + ++ A+ M +L FL G + T M P S ++ A YL R AAPAVL + V EG FRG+ ++TP AA VAA + +LDPLL+F MGMAGAA ATA +Q A A Y LW+R
Sbjct: 140 IALPALMGLLADPLLSIVDTAFVGRSVGGAIDLAALGVCTSIFHMAFTVFRASTVATTSLVGSASTPEEKRQTTKISMGFALAMGTLVFLSLRLAGGHMLTG-------MAVAPNSDVFRSACSYLYTRSWAAPAVLFVLVAEGAFRGNGDSKTPLVAASVAAVVNLILDPLLMFPLRMGMAGAAAATAISQIAAAALYAWRLWKR 338 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig106.1882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig106.1882.1 >prot_S-ischiensis_contig106.1882.1 ID=prot_S-ischiensis_contig106.1882.1|Name=mRNA_S-ischiensis_contig106.1882.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=353bp MGKARETRHMVRAMQVSSFPRNMRHCTASIVSIVSLLRFTCLALGPCGANback to top mRNA from alignment at S-ischiensis_contig106:203625..206933- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig106.1882.1 ID=mRNA_S-ischiensis_contig106.1882.1|Name=mRNA_S-ischiensis_contig106.1882.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3309bp|location=Sequence derived from alignment at S-ischiensis_contig106:203625..206933- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig106:203625..206933- >mRNA_S-ischiensis_contig106.1882.1 ID=mRNA_S-ischiensis_contig106.1882.1|Name=mRNA_S-ischiensis_contig106.1882.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2118bp|location=Sequence derived from alignment at S-ischiensis_contig106:203625..206933- (Schizocladia ischiensis KU_0333)back to top |