mRNA_S-ischiensis_contig106.1879.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig106.1879.1 vs. uniprot
Match: D8LFT4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFT4_ECTSI) HSP 1 Score: 138 bits (348), Expect = 2.230e-35 Identity = 70/135 (51.85%), Postives = 87/135 (64.44%), Query Frame = 2
Query: 206 KPKMTKEERREKYTKRAADLREKERMKTVYAKKL-CLGCRKWGHVLASCPTATKGPVGICYNCGSTEHALGKCPKPRRKDGSLPHAMXXXXXXXXXXXXXXERNERGVYPKGGQCKICSSRRHLASKCPEAPAQD 607
KPKMTKEERR KYT++A + REK+ A K CLGCR WGH++A+CP A K GIC+NCGS +HAL CP P++KDGSLP+A ++N GVYPKGG CK C S+ HL+ CPE+ D
Sbjct: 64 KPKMTKEERRAKYTQKAYEAREKQNQLGPGANKTRCLGCRAWGHIVANCPEA-KAATGICFNCGSAKHALRVCPAPKQKDGSLPYATCFICKAKGHISAHCKQNANGVYPKGGFCKWCGSKHHLSWDCPESTKVD 197
BLAST of mRNA_S-ischiensis_contig106.1879.1 vs. uniprot
Match: A0A835ZFQ1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFQ1_9STRA) HSP 1 Score: 101 bits (252), Expect = 6.290e-22 Identity = 98/223 (43.95%), Postives = 110/223 (49.33%), Query Frame = 2
Query: 23 VCYVNPSKASTMSKKERRRLTKKLKKEALGHGKSHAPVKEGKKARKAHHGQDMGERPPKEKKPKMTKEERREKYTKRAADLREKERMKTVY----------------------------AKKL-CLGCRKWGHVLASCPTATKGPVGI-CYNCGSTEHALGKCPKPRR---KDGSLPHAMXXXXXXXXXXXXXXERNERGVYPKGGQCKICSSRRHLASKCPE 592
VCY+ ST+SK ERRRLTK E KKA KA GE P K KP +TKE+RRE++T A RE A KL CLGCR GH++ C AT + CY CGSTEH L CP+ R K A XXXXXXXXXXXXXX +N RG+YPKGG CKIC S RHLAS CPE
Sbjct: 12 VCYLKGVDVSTLSKSERRRLTK-----------------EAKKALKAKQVA-KGEAPQKASKPTITKEQRRERFTAIAKKRREXXXXXXXXXGVIKSGARGGAGRDDGGNRATGDAEGAANKLYCLGCRGKGHLIKDCKKATARAASVVCYRCGSTEHTLKGCPEEARARDKRAVTTFATXXXXXXXXXXXXXXXQNARGIYPKGGCCKICESVRHLASDCPE 216
BLAST of mRNA_S-ischiensis_contig106.1879.1 vs. uniprot
Match: YL92_SCHPO (Uncharacterized protein C683.02c n=2 Tax=Schizosaccharomyces pombe TaxID=4896 RepID=YL92_SCHPO) HSP 1 Score: 86.7 bits (213), Expect = 6.450e-17 Identity = 46/126 (36.51%), Postives = 61/126 (48.41%), Query Frame = 2
Query: 236 EKYTKRAADLREKERMKTVYAKKLCLGCRKWGHVLASCPTATKGPVGICYNCGSTEHALGKCPKPRRKDGSLPHAMXXXXXXXXXXXXXXERNERGVYPKGGQCKICSSRRHLASKCPEAPAQDAA 613
E+ K+ ++ R R+ K C CR+ GH++ CP A K V IC+ CGS EH+L C K G L A E+N +G+YPKGG CK CSS HLA C + D +
Sbjct: 55 ERQKKKRSEYRRLRRINQRNRDKFCFACRQQGHIVQDCPEA-KDNVSICFRCGSKEHSLNAC----SKKGPLKFAKCFICHENGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQVNKDDVS 175
BLAST of mRNA_S-ischiensis_contig106.1879.1 vs. uniprot
Match: A0A1U7LTQ7_NEOID (Zinc finger CCHC domain-containing protein 9 n=1 Tax=Neolecta irregularis (strain DAH-3) TaxID=1198029 RepID=A0A1U7LTQ7_NEOID) HSP 1 Score: 85.9 bits (211), Expect = 8.820e-17 Identity = 55/99 (55.56%), Postives = 69/99 (69.70%), Query Frame = 2
Query: 308 CLGCRKWGHVLASCPTATKGPVGICYNCGSTEHALGKCPKPRRKDGSLPHAMXXXXXXXXXXXXXXERNERGVYPKGGQCKICSSRRHLASKCPEAPAQ 604
C CR GH+ + CP A++G GICY CGST+HAL +C +RK SLP+A XXXXXXXXXXXXXX +N++G YP GG C IC HL +C + PA+
Sbjct: 62 CFVCRAPGHLASECPLASEGQSGICYKCGSTQHALREC---KRKVKSLPYAKXXXXXXXXXXXXXXXQNDKGKYPNGGGCGICGGISHLKDQC-KKPAE 156
BLAST of mRNA_S-ischiensis_contig106.1879.1 vs. uniprot
Match: A0A0F7UK68_NEOCL (Poly-zinc finger protein 1, related n=1 Tax=Neospora caninum (strain Liverpool) TaxID=572307 RepID=A0A0F7UK68_NEOCL) HSP 1 Score: 89.0 bits (219), Expect = 1.440e-16 Identity = 60/122 (49.18%), Postives = 73/122 (59.84%), Query Frame = 2
Query: 302 KLCLGCRKWGHVLASCPTATK-------------------GPV--GICYNCGSTEHALGKCPKPRRKDGSLPHAMXXXXXXXXXXXXXXERNERGVYPKGGQCKICSSRRHLASKCPEAPAQ 604
K+CL CRK GH+L +CP A GPV GIC+NCG+T+H L C K R+ DG+LP A+XXXXXXXXXXXXXX ++ G YP+GG C C S HL +CPE Q
Sbjct: 293 KICLRCRKKGHLLENCPLAQSSATGSSAAENDTTQSDAKSGPVMSGICFNCGATDHTLKNCKKKRKPDGALPFALXXXXXXXXXXXXXXPKSTTGKYPQGGSCHTCGSIYHLQIECPEFQRQ 414
BLAST of mRNA_S-ischiensis_contig106.1879.1 vs. uniprot
Match: A0A2H9TNT6_9FUNG (CCHC-type domain-containing protein n=1 Tax=Paramicrosporidium saccamoebae TaxID=1246581 RepID=A0A2H9TNT6_9FUNG) HSP 1 Score: 87.4 bits (215), Expect = 5.990e-16 Identity = 44/104 (42.31%), Postives = 57/104 (54.81%), Query Frame = 2
Query: 278 RMKTVY-AKKLCLGCRKWGHVLASCPTATKGPVGICYNCGSTEHALGKCPKPRRKDGSLPHAMXXXXXXXXXXXXXXERNERGVYPKGGQCKICSSRRHLASKC 586
R TV+ +K +CL CRK GH + CP G ICYNCGS H L C +PR + LP+A +NERG+YP+GG C+ C S++HLA C
Sbjct: 41 RSSTVHRSKPVCLKCRKRGHSVKYCPA---GASSICYNCGSHTHTLKACRQPRSNE--LPYASCYVCGGTGHLAGQCPKNERGIYPRGGGCRFCGSKQHLARDC 139
BLAST of mRNA_S-ischiensis_contig106.1879.1 vs. uniprot
Match: A0A6P5WDE5_9EIME (zinc finger CCHC domain-containing protein 9 n=2 Tax=Cyclospora cayetanensis TaxID=88456 RepID=A0A6P5WDE5_9EIME) HSP 1 Score: 84.0 bits (206), Expect = 5.090e-15 Identity = 54/124 (43.55%), Postives = 69/124 (55.65%), Query Frame = 2
Query: 260 DLREKERMKTVYAKKLCLGCRKWGHVLASCPTATK-------GPVGICYNCGSTEHALGKCPKPRRKDGSLPHAMXXXXXXXXXXXXXXERNERGVYPKGGQCKICSSRRHLASKCPEAPAQDA 610
D E++ +KK+CL CRK GH+L C GIC+NCGS H L C KPR +DG+LP XXXXXXXXXX +++ G YPKGG C+ C S HL ++C +Q A
Sbjct: 216 DAHEEDPRSNKRSKKICLRCRKRGHLLHECRQGVSQAQAEGAATSGICFNCGSHNHTLKNCKKPRAEDGALPFXXXXXXXXXXXXSSQCPQSKTGKYPKGGCCRTCGSIYHLQAECAAFLSQKA 339
BLAST of mRNA_S-ischiensis_contig106.1879.1 vs. uniprot
Match: A0A0C2XNF4_9AGAM (Uncharacterized protein n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C2XNF4_9AGAM) HSP 1 Score: 78.2 bits (191), Expect = 1.650e-13 Identity = 39/102 (38.24%), Postives = 51/102 (50.00%), Query Frame = 2
Query: 254 AADLREKERMKTVYAKKLCLGCRKWGHVLASCPT------ATKGPVGICYNCGSTEHALGKCPKPRRKDGSLPHAMXXXXXXXXXXXXXXERNERGVYPKGG 541
A++ R + R++ C CR+ GH CPT +K +GICY CGS+ H L KC KPR + GSLP A +NE+GVYP GG
Sbjct: 71 ASETRRQRRIQDRMMATTCFACRQRGHAAKDCPTNQGGGNKSKAGIGICYRCGSSNHTLSKCRKPRDEAGSLPFASCFVCKGTGHLASTCPQNEKGVYPNGG 172
BLAST of mRNA_S-ischiensis_contig106.1879.1 vs. uniprot
Match: A0A1Z5JJ88_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JJ88_FISSO) HSP 1 Score: 75.1 bits (183), Expect = 6.800e-13 Identity = 42/127 (33.07%), Postives = 57/127 (44.88%), Query Frame = 2
Query: 212 KMTKEERREKYTKRAADLREKERMKTVYAKKLCLGCRKWGHVLASCPTATKGPVGICYNCGSTEHALGKCPKPRRKDGSLPHAMXXXXXXXXXXXXXXERNERGVYPKGGQCKICSSRRHLASKCPE 592
K+TKEERR KYTK A D ++KER + ++ C CRK GH LA CP + + D LP A +N +G+Y GG C++C S H A+ CP+
Sbjct: 11 KITKEERRAKYTKIARDRKQKERTRLKESQTTCFHCRKHGHSLAQCPDKPQSVQLXXXXXXXXXXXXXXXKMKDKNDSDLPFAKCFVCHKEGHLSRQCPQNTKGIYVNGGSCRLCGSTEHRATDCPD 137
BLAST of mRNA_S-ischiensis_contig106.1879.1 vs. uniprot
Match: F0VPW8_NEOCL (Poly-zinc finger protein 1, related n=1 Tax=Neospora caninum (strain Liverpool) TaxID=572307 RepID=F0VPW8_NEOCL) HSP 1 Score: 72.4 bits (176), Expect = 2.200e-11 Identity = 56/122 (45.90%), Postives = 68/122 (55.74%), Query Frame = 2
Query: 302 KLCLGCRKWGHVLASCPTATK-------------------GPV--GICYNCGSTEHALGKCPKPRRKDGSLPHAMXXXXXXXXXXXXXXERNERGVYPKGGQCKICSSRRHLASKCPEAPAQ 604
K+CL CRK GH+L +CP A GPV GIC+NCG+T+H L C K R+ DG+LP A+XXXXXXXXXXXXXX ++ G C C S HL +CPE Q
Sbjct: 85 KICLRCRKKGHLLENCPLAQSSATGSSAAENDTTQSDAKSGPVMSGICFNCGATDHTLKNCKKKRKPDGALPFALXXXXXXXXXXXXXXPKSTTG------SCHTCGSIYHLQIECPEFQRQ 200 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig106.1879.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig106.1879.1 >prot_S-ischiensis_contig106.1879.1 ID=prot_S-ischiensis_contig106.1879.1|Name=mRNA_S-ischiensis_contig106.1879.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=253bp MEEKVCYVNPSKASTMSKKERRRLTKKLKKEALGHGKSHAPVKEGKKARKback to top mRNA from alignment at S-ischiensis_contig106:166508..170125+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig106.1879.1 ID=mRNA_S-ischiensis_contig106.1879.1|Name=mRNA_S-ischiensis_contig106.1879.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3618bp|location=Sequence derived from alignment at S-ischiensis_contig106:166508..170125+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig106:166508..170125+ >mRNA_S-ischiensis_contig106.1879.1 ID=mRNA_S-ischiensis_contig106.1879.1|Name=mRNA_S-ischiensis_contig106.1879.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1518bp|location=Sequence derived from alignment at S-ischiensis_contig106:166508..170125+ (Schizocladia ischiensis KU_0333)back to top |