mRNA_S-ischiensis_contig106.1871.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig106.1871.1 vs. uniprot
Match: D7FS66_ECTSI (Putative cyclin A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS66_ECTSI) HSP 1 Score: 340 bits (872), Expect = 5.060e-113 Identity = 176/285 (61.75%), Postives = 214/285 (75.09%), Query Frame = 1
Query: 22 QLPPGVCEIDAEVGAGEAGALWNPDYTHEYQAWLRSQQGKNRPRAYIPGRQRDMKHNMRSILVDWIVEVCEEFKMATPTLFLIVELVDRALSKFEVARSRLQLLGCACILLASKHEEIYPPTVDDLVHISDNTYKRGDIIEMELRVMRELDFRLHCITPCFFLERFCRAAKSNRRERSLARYLLELLLQDYHMLEYPPSLKAAAAVNLACQTL--RSSAQTAWTAQARYYTGYAAQELEECVRRLHALHLGAEAHSLRAVRDKYTRSGNHRVSEVTCLLADWLCF 870
QLPPGV +IDA V L NPDY E+ +LR Q+ +NRP AYI +Q+DM+ +MRS+LVDWI EVC++FK+++ TLF V+L+DR+LS FEV R +LQLLGCAC++LASK+EEIY PT ++L HISDNTY R +II MEL V+ L FRL CITPC F +RFC AAKSN RERSL YLLELLLQDY + PSLKAAAA+ LA QTL R + AWT Q +YTGYAA+ELE CVRRLH LH+ AE ++L AVRDKY +S HRV+EVTC L D+L F
Sbjct: 49 QLPPGVKDIDAGVSEEGESHLLNPDYAKEHALYLREQEKRNRPVAYIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNARERSLVSYLLELLLQDYQGVSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAARELEPCVRRLHYLHVRAEGNNLHAVRDKYKKSALHRVAEVTCALEDYLHF 333
BLAST of mRNA_S-ischiensis_contig106.1871.1 vs. uniprot
Match: A0A6H5L2E4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E4_9PHAE) HSP 1 Score: 337 bits (864), Expect = 1.330e-108 Identity = 176/287 (61.32%), Postives = 214/287 (74.56%), Query Frame = 1
Query: 22 QLPPGVCEIDAEVGAGEAGALWNPDYTHEYQAWLRSQQGKNRPRAYIPGRQRDMKHNMRSILVDWIVEVCEEFKMATPTLFLIVELVDRALSKFEVARSRLQLLGCACILLASKHEEIYPPTVDDLVHISDNTYKRGDIIEMELRVMRELDFRLHCITPCFFLERFCRAAKSNRRERSLARYLLELLLQDYHMLEYPPSLKAAAAVNLACQTL--RSSAQTAWTAQARYYTGYAAQELEECVRRLHALHLGAEAHSLRAVRDKYTRSGNHRVSEVTCLLADWLCFDG 876
QLPPGV +IDA V L NPDY ++ +LR Q+ +NRP AYI +QRDM+ +MRS+LVDWI EVC++FK+++ TLF V+L+DR+LS FEV R +LQLLGCAC++LASK+EEIY PT ++L HISDNTY R +II MEL V+ L FRL ITPC F +RFC AAKSN RERSL YLLELLLQDY + PSLKAAAA+ LA QTL R + AWT Q +YTGYAA+ELE CVRRLH LH+ AE ++L AVRDKY +S HRV+EVTC L D+L F G
Sbjct: 289 QLPPGVKDIDAGVSEQGESHLLNPDYAKQHALYLREQEKRNRPVAYIGTKQRDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTSITPCNFQDRFCLAAKSNARERSLVSYLLELLLQDYQGVSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAARELEPCVRRLHYLHVRAEGNNLHAVRDKYKKSALHRVAEVTCALEDYLHFGG 575
BLAST of mRNA_S-ischiensis_contig106.1871.1 vs. uniprot
Match: A0A835YJW4_9STRA (Cyclin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJW4_9STRA) HSP 1 Score: 234 bits (598), Expect = 4.630e-70 Identity = 129/264 (48.86%), Postives = 172/264 (65.15%), Query Frame = 1
Query: 85 WNPDYTHEYQAWLRSQQG--KNRPRAYIPGRQRDMKHNMRSILVDWIVEVCEEFKMATPTLFLIVELVDRALSKFEVARSRLQLLGCACILLASKHEEIYPPTVDDLVHISDNTYKRGDIIEMELRVMRELDFRLHCITPCFFLERFCRAAKSNRRERSLARYLLELLLQDYHMLEYPPSLKAAAAVNLACQTLRSSAQTAWTAQARYYTGYAAQELEECVRRLHALHLGAEAHSLRAVRDKYTRSGNHRVSEVTCLLADWLCF 870
+N Y +YQ WLR+Q+ K RP AY+ QRD++ MRS L+DW+VEVC EF++ T FL++EL+DR+LS F V R LQLLGCAC+L+A+K EE +PP+V+ LV+ISD+ Y D++ ME +V++ L+F + C+TP F F AA N R+ L YLLEL L DY ++ PS KAAAA LA T+R AW+A AR +TGY+A LE CVRR+ LH AE L A+RD+Y + HRV+ V CL L F
Sbjct: 212 FNRCYGAQYQHWLRTQEANLKFRPTAYLTQVQRDLRAVMRSTLIDWLVEVCTEFRLQPGTPFLVIELLDRSLSAFCVNRDNLQLLGCACLLVAAKFEEEHPPSVNSLVYISDSAYTISDMVRMEGQVLQHLNFAVSCVTPHHFAAEFSAAAGCNARQGYLCLYLLELALLDYSLVSLLPSHKAAAAALLARMTMRRGGG-AWSALARQFTGYSAATLEPCVRRMRVLHESAENSKLHAIRDRYCKQERHRVALVCCLKESELVF 474
BLAST of mRNA_S-ischiensis_contig106.1871.1 vs. uniprot
Match: A0A7S0ETL5_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0ETL5_9EUKA) HSP 1 Score: 196 bits (497), Expect = 3.540e-56 Identity = 111/244 (45.49%), Postives = 158/244 (64.75%), Query Frame = 1
Query: 97 YTHEYQAWLRSQQ-GKNRPRAYIPGRQRDMKHNMRSILVDWIVEVCEEFKMATPTLFLIVELVDRALSKFEVARSRLQLLGCACILLASKHEEIYPPTVDDLVHISDNTYKRGDIIEMELRVMRELDFRLHCITPCFFLERFCRAAKSNRRE---RSLARYLLELLLQDYHMLEYPPSLKAAAAVNLACQTLRSSAQTAWTAQARYYTGYAAQELEECVRRLHALHLGAEAHSLRAVRDKYTRS 816
Y +E A+L+ + GK + + QRD+ MR+IL+DW+VEV EE+++ TL L V +DR LS VARS+LQL+G C+L+ASK+EEI+PP VD+ V+ISDNTYKR +I+ ME ++ L+F L T FL RF +AAK+ + +L +YL EL LQ+Y L+Y PS AAAA LA T+R + WT +G++AQ+L CV +HA+ AEA+SL+AVR+KY+ +
Sbjct: 116 YVNEIYAYLQELEVGKQQVSPHFMQNQRDINAQMRAILIDWLVEVAEEYRLVPETLHLAVNYIDRFLSYVPVARSKLQLVGVTCMLIASKYEEIHPPAVDEFVYISDNTYKREEIMSMEAIILNRLNFELSIATSKGFLNRFMKAAKAGECDATTEALCQYLCELTLQEYSFLKYRPSQIAAAAFRLALHTMRLPS---WTPLLEQISGFSAQQLSGCVTEMHAVFRKAEANSLQAVREKYSHA 356
BLAST of mRNA_S-ischiensis_contig106.1871.1 vs. uniprot
Match: A0A0M0JCK3_9EUKA (Cyclin N-terminal domain-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JCK3_9EUKA) HSP 1 Score: 189 bits (479), Expect = 4.100e-54 Identity = 109/252 (43.25%), Postives = 159/252 (63.10%), Query Frame = 1
Query: 97 YTHEYQAWLRSQQGKNRPRAYIPGRQRDMKHNMRSILVDWIVEVCEEFKMATPTLFLIVELVDRALSKFEVARSRLQLLGCACILLASKHEEIYPPTVDDLVHISDNTYKRGDIIEMELRVMRELDFRLHCITPCFFLERFCRAAKSNRRERS---LARYLLELLLQDYHMLEYPPSLKAAAAVNLACQTLRSSAQTAWTAQARYYTGYAAQELEECVRRLHALHLGAEAHSLRAVRDKYTRSGNHRVSEVT 843
YT E ++LR + ++R QRD+ MR IL+DW+VEV EE+++ + TL+L V +DR LS V RS+LQL+G C+L+ASK+EEI+PP VD+ V+ISDNTYKR +I+ ME V+ L+F L T F+ RF +AA++ + + L +YL EL LQ+Y ++Y PS AAAA+ LA T+R A WT +GY+A++L CV + A AE ++L+AVR+KY+ + VS +T
Sbjct: 66 YTKEIYSYLRDLELEHRVAPQFMQSQRDINATMRGILIDWLVEVAEEYRLESETLYLAVNYIDRFLSHVPVNRSKLQLVGVTCMLVASKYEEIHPPAVDEFVYISDNTYKREEILHMEGMVLNRLNFELSVATAKVFINRFLKAARAGECDSTTEMLCKYLTELTLQEYSFVKYRPSEVAAAALRLALHTMRLPA---WTPLLEATSGYSAEDLNGCVAEVLASFRKAETNNLQAVREKYSHAKFLCVSTLT 314
BLAST of mRNA_S-ischiensis_contig106.1871.1 vs. uniprot
Match: UPI0003F0A1E2 (G2/mitotic-specific cyclin-A-like isoform X2 n=3 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0A1E2) HSP 1 Score: 190 bits (482), Expect = 3.190e-53 Identity = 111/274 (40.51%), Postives = 165/274 (60.22%), Query Frame = 1
Query: 37 VCEIDA-----EVGAGEAGALWNPDYTHEYQAWLRSQQGKNRPRAYIPGRQRDMKHNMRSILVDWIVEVCEEFKMATPTLFLIVELVDRALSKFEVARSRLQLLGCACILLASKHEEIYPPTVDDLVHISDNTYKRGDIIEMELRVMRELDFRLHCITPCFFLERFCRAAKSNRRERSLARYLLELLLQDYH-MLEYPPSLKAAAAVNLACQTLRSSAQTAWTAQARYYTGYAAQELEECVRRLHALHLGAEAHSLRAVRDKYTRSGNHRVSEV 840
+CE D ++ A L+ PDY + ++L+ + +NRP+A +Q D+ +MR ILVDW+VEV EE+K+ TL+L V +DR LS V RS+LQL+G A + LA+K EEIYPP V + V+I+D+TY + ++ ME V++ L F L T FL+RF RAA+++ + +AR+L EL LQ+Y + Y S AA+AV LA TL + Q WTA +YT + Q++ CVR LH + + + +AVR+KY H+VS +
Sbjct: 162 ICETDRLGIEFDLDAKADSQLFVPDYAKDIFSYLKEAEQRNRPKANYMKKQPDITTSMRCILVDWLVEVAEEYKLHNETLYLAVNYIDRFLSSMSVLRSKLQLVGAASMFLAAKFEEIYPPEVGEFVYITDDTYTKKQVLRMEHLVLKVLSFDLAIPTINVFLDRFLRAAEADSKAECMARFLAELTLQEYEPYIRYSQSTIAASAVCLANHTLHPNQQP-WTATLEHYTSFTFQDILPCVRDLHHTFVNSVNNQQQAVREKYKTQKLHQVSLI 434
BLAST of mRNA_S-ischiensis_contig106.1871.1 vs. uniprot
Match: A0A7S4G2F6_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4G2F6_9EUGL) HSP 1 Score: 184 bits (467), Expect = 1.410e-52 Identity = 107/249 (42.97%), Postives = 154/249 (61.85%), Query Frame = 1
Query: 91 PDYTHEYQAWLRSQQGKNRPR-AYIPGRQRDMKHNMRSILVDWIVEVCEEFKMATPTLFLIVELVDRALSKFEVARSRLQLLGCACILLASKHEEIYPPTVDDLVHISDNTYKRGDIIEMELRVMRELDFRLHCITPCFFLERFCRAAKSNRRERSLARYLLELLLQDYHMLEYPPSLKAAAAVNLACQTLRSSAQTAWTAQARYYTGYAAQELEECVRRLHALHLGAEAHSLRAVRDKYTRSGNHRVS 834
P+Y ++LR + ++RP Y+ Q D+ MR+IL+DW+ EV EEF + TL L V VDR LS V R+RLQL+G C+L+ASK EEI PP+VDD V+I+DNTY R ++ +ME+ ++ +L+F L T F+ + R A++++ L YL+EL LQDY L YPPSL AA A+ LA T + W+ YYT Y QEL +C+R +H + + ++L+AVR+KY+ S RVS
Sbjct: 42 PEYFDTIASYLRIVERRHRPSMTYVEEVQADITWQMRAILIDWLNEVTEEFNLKIDTLCLAVNYVDRYLSCVHVQRNRLQLVGVTCMLIASKIEEIVPPSVDDFVYITDNTYTRDELTKMEIVILNQLEFCLTAATVRDFVGIYLRVAQADKAVCMLVDYLVELTLQDYVFLRYPPSLIAATAIVLALFTAEARC---WSDSLSYYTRYQPQELNDCLRDMHRCYAHSAENTLQAVREKYSHSRFLRVS 287
BLAST of mRNA_S-ischiensis_contig106.1871.1 vs. uniprot
Match: A0A7S4II30_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4II30_9EUKA) HSP 1 Score: 185 bits (469), Expect = 3.720e-52 Identity = 106/252 (42.06%), Postives = 160/252 (63.49%), Query Frame = 1
Query: 97 YTHEYQAWLRSQQGKNRPRAYIPGRQRDMKHNMRSILVDWIVEVCEEFKMATPTLFLIVELVDRALSKFEVARSRLQLLGCACILLASKHEEIYPPTVDDLVHISDNTYKRGDIIEMELRVMRELDFRLHCITPCFFLERFCRAAKSNRRERS---LARYLLELLLQDYHMLEYPPSLKAAAAVNLACQTLRSSAQTAWTAQARYYTGYAAQELEECVRRLHALHLGAEAHSLRAVRDKYTRSGNHRVSEVT 843
Y + ++LR + ++R + QRD+ MRSILVDW+VEV EE+++ TL+L V +DR L+ V RS+LQL+G C+L+ASK+EEI+PP VD+ V+ISDNTYKR +I+ ME ++ L F L T FL RF +AAK +++ L YL EL LQ+Y ++Y PS AAAA+ LA T+R + W+ + +GY +++L+ CV + +L AE+++L+AVR+KY+ + VS +T
Sbjct: 107 YVVDIFSYLRELELEHRVSPHFMQGQRDINATMRSILVDWLVEVAEEYRLVPETLYLAVNYIDRFLAHVPVNRSKLQLVGVTCMLIASKYEEIHPPAVDEFVYISDNTYKREEILHMEGMILNRLKFELSAATVKVFLNRFLKAAKVGECDQTTEKLCEYLCELTLQEYSFIKYRPSEIAAAALRLALHTMRLPS---WSPLLQDVSGYPSEKLQNCVAEMFSLFRKAESNNLQAVREKYSHAKFLCVSTLT 355
BLAST of mRNA_S-ischiensis_contig106.1871.1 vs. uniprot
Match: A0A7I8K952_SPIIN (Hypothetical protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8K952_SPIIN) HSP 1 Score: 184 bits (467), Expect = 1.180e-51 Identity = 112/281 (39.86%), Postives = 169/281 (60.14%), Query Frame = 1
Query: 37 VCEIDAEVGAGEAGALWNPDYTHEYQAWLRSQQ--GKNRPRA-YIPGRQRDMKHNMRSILVDWIVEVCEEFKMATPTLFLIVELVDRALSKFEVARSRLQLLGCACILLASKHEEIYPPTVDDLVHISDNTYKRGDIIEMELRVMRELDFRLHCITPCFFLERFCRAAKSNRRERSL-----ARYLLELLLQDYHMLEYPPSLKAAAAVNLACQTLRSSAQTAWTAQARYYTGYAAQELEECVRRLHALHLGAEAHSLRAVRDKYTRSGNHRVSEVTCLLA 855
V +ID+ +G + A + PD +LRS + K RP A +I Q+D+ NMR ILVDW+VEV EE+K+ + TL+L + +DR LS + R RLQLLG +C+L+ASK+EEI PP V+D +I+DNTY + ++++ME +++ L F + T FL RF RA + + + SL + YL EL L DY + PS+ AA++V LA T+ WT ++Y+GY EL++CV+ +H + L +A SL A+RDKY + H+ V +L+
Sbjct: 95 VVDIDSSIGDPQLCAHYAPDIYR----YLRSMEVESKRRPLADFIEAVQKDVTANMRGILVDWLVEVAEEYKLISDTLYLTISYIDRFLSSNPINRQRLQLLGVSCMLIASKYEEISPPHVEDFCYITDNTYTKEEVVKMESEILKFLKFEMGNPTIKTFLRRFIRAGQDDCKSPSLQLEFMSNYLAELSLLDYSCTRFLPSVVAASSVFLARFTMNPDTHP-WTPTLQHYSGYKPSELDDCVQAIHDMQLNRKASSLVAIRDKYKQ---HKFKCVGTMLS 367
BLAST of mRNA_S-ischiensis_contig106.1871.1 vs. uniprot
Match: A0A388L756_CHABU (Cyclin N-terminal domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L756_CHABU) HSP 1 Score: 188 bits (477), Expect = 1.530e-51 Identity = 109/253 (43.08%), Postives = 157/253 (62.06%), Query Frame = 1
Query: 97 YTHEYQAWLRSQQGKNRPRA-YIPGRQRDMKHNMRSILVDWIVEVCEEFKMATPTLFLIVELVDRALSKFEVARSRLQLLGCACILLASKHEEIYPPTVDDLVHISDNTYKRGDIIEMELRVMRELDFRLHCITPCFFLERFCRAAKSNRRERSLARYLLELLLQDYHMLEYPPSLKAAAAVNLACQTLRSSAQTAWTAQARYYTGYAAQELEECVRRLHALHLGAEAHSLRAVRDKYTRSGNHRVSEVTCLL 852
Y ++ +LR + K RA ++ Q+D+ NMR IL+DW+VEV EE+K+ + TL+L + VDR L+ V RSRLQLLG AC+L+A+K+EEIY P V++ +I+DNTY+R +++EME V++ L F L T FL RF R+A++N + L YL EL L DY L Y PS+ AA+AV +A TL + Q W +YT Y A EL+ECV +H L +L A+R+KY+ +H+ V L+
Sbjct: 277 YVNDIYHFLRVAESKRWVRADFMETLQQDINPNMRGILIDWLVEVAEEYKLMSDTLYLTISYVDRYLTSNIVPRSRLQLLGVACMLIAAKYEEIYAPQVEEFCYITDNTYRREEVLEMERSVLKNLRFELTTPTIKSFLRRFLRSAQANTKMEFLGNYLAELTLLDYSFLRYLPSMVAASAVLMAKFTLEPN-QRPWDQTLAHYTHYHASELKECVMAIHHCQLNTRGCTLPAIREKYS---HHKFKCVATLM 525 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig106.1871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig106.1871.1 >prot_S-ischiensis_contig106.1871.1 ID=prot_S-ischiensis_contig106.1871.1|Name=mRNA_S-ischiensis_contig106.1871.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=234bp MKHNMRSILVDWIVEVCEEFKMATPTLFLIVELVDRALSKFEVARSRLQLback to top mRNA from alignment at S-ischiensis_contig106:117440..118432+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig106.1871.1 ID=mRNA_S-ischiensis_contig106.1871.1|Name=mRNA_S-ischiensis_contig106.1871.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=993bp|location=Sequence derived from alignment at S-ischiensis_contig106:117440..118432+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig106:117440..118432+ >mRNA_S-ischiensis_contig106.1871.1 ID=mRNA_S-ischiensis_contig106.1871.1|Name=mRNA_S-ischiensis_contig106.1871.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1404bp|location=Sequence derived from alignment at S-ischiensis_contig106:117440..118432+ (Schizocladia ischiensis KU_0333)back to top |