mRNA_S-ischiensis_contig106.1868.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig106.1868.1
Unique NamemRNA_S-ischiensis_contig106.1868.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig106.1868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig106contigS-ischiensis_contig106:105375..105934 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size561
Cds size558
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.707617-CDS-S-ischiensis_contig106:105374..1059321622815566.707617-CDS-S-ischiensis_contig106:105374..105932Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 105375..105932 +
1695739774.351792-CDS-S-ischiensis_contig106:105374..1059321695739774.351792-CDS-S-ischiensis_contig106:105374..105932Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 105375..105932 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig106.1868.1prot_S-ischiensis_contig106.1868.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig106 105375..105932 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig106.1868.1

>prot_S-ischiensis_contig106.1868.1 ID=prot_S-ischiensis_contig106.1868.1|Name=mRNA_S-ischiensis_contig106.1868.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=186bp
ASPRLPASGGQGRGVLAAGEPGRVHAGGGRQADRGAHIHFSFLPEASARS
ARPGDPRTPGGQDLASAGTGDPGQYRAGLERCRAKQRPQWGRRGRWYGHG
QGATTKPRGSECTRSGAGGSCGSGRGRQPSAANRRTGQRYGHGQGATTKP
RGSECTRSGAGGSCGGGGRRQRSTKPRGSECTRSRA
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mRNA from alignment at S-ischiensis_contig106:105375..105934+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig106.1868.1 ID=mRNA_S-ischiensis_contig106.1868.1|Name=mRNA_S-ischiensis_contig106.1868.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=560bp|location=Sequence derived from alignment at S-ischiensis_contig106:105375..105934+ (Schizocladia ischiensis KU_0333)
GCTTCTCCGCGCCTGCCTGCCTCTGGAGGCCAAGGCCGTGGGGTTCTCGC
GGCCGGTGAGCCCGGCAGGGTCCATGCGGGCGGCGGGCGCCAAGCTGACC
GGGGCGCTCACATTCACTTCTCTTTCCTCCCGGAGGCAAGTGCCAGGAGC
GCCCGACCTGGCGACCCCCGCACCCCAGGCGGCCAAGACCTTGCCAGTGC
CGGCACGGGAGACCCAGGGCAATACCGCGCGGGCCTCGAGCGGTGCCGGG
CCAAGCAGCGGCCGCAGTGGGGGCGCCGTGGGCGGTGGTACGGCCACGGC
CAGGGAGCCACCACCAAACCGAGAGGCTCCGAGTGCACAAGAAGTGGAGC
AGGGGGGAGCTGCGGCAGTGGTAGGGGGCGACAGCCCTCTGCAGCCAACA
GACGCACTGGGCAGCGGTACGGCCACGGCCAGGGAGCCACCACCAAACCG
AGAGGCTCCGAGTGCACAAGAAGCGGGGCAGGGGGGAGCTGCGGCGGCGG
TGGGCGACGACAGCGCTCTACGAAACCGAGAGGCTCAGAGTGCACAAGAA
GCAGAGCAGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig106:105375..105934+

>mRNA_S-ischiensis_contig106.1868.1 ID=mRNA_S-ischiensis_contig106.1868.1|Name=mRNA_S-ischiensis_contig106.1868.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1116bp|location=Sequence derived from alignment at S-ischiensis_contig106:105375..105934+ (Schizocladia ischiensis KU_0333)
GCTTCTCCGCGCCTGCCTGCCTCTGGAGGCCAAGGCCGTGGGGTTCTCGC
GGCCGGTGAGCCCGGCAGGGTCCATGCGGGCGGCGGGCGCCAAGCTGACC
GGGGCGCTCACATTCACTTCTCTTTCCTCCCGGAGGCAAGTGCCAGGAGC
GCCCGACCTGGCGACCCCCGCACCCCAGGCGGCCAAGACCTTGCCAGTGC
CGGCACGGGAGACCCAGGGCAATACCGCGCGGGCCTCGAGCGGTGCCGGG
CCAAGCAGCGGCCGCAGTGGGGGCGCCGTGGGCGGTGGTACGGCCACGGC
CAGGGAGCCACCACCAAACCGAGAGGCTCCGAGTGCACAAGAAGTGGAGC
AGGGGGGAGCTGCGGCAGTGGTAGGGGGCGACAGCCCTCTGCAGCCAACA
GACGCACTGGGCAGCGGTACGGCCACGGCCAGGGAGCCACCACCAAACCG
AGAGGCTCCGAGTGCACAAGAAGCGGGGCAGGGGGGAGCTGCGGCGGCGG
TGGGCGACGACAGCGCTCTACGAAACCGAGAGGCTCAGAGTGCACAAGAA
GCAGAGCAGCTTCTCCGCGCCTGCCTGCCTCTGGAGGCCAAGGCCGTGGG
GTTCTCGCGGCCGGTGAGCCCGGCAGGGTCCATGCGGGCGGCGGGCGCCA
AGCTGACCGGGGCGCTCACATTCACTTCTCTTTCCTCCCGGAGGCAAGTG
CCAGGAGCGCCCGACCTGGCGACCCCCGCACCCCAGGCGGCCAAGACCTT
GCCAGTGCCGGCACGGGAGACCCAGGGCAATACCGCGCGGGCCTCGAGCG
GTGCCGGGCCAAGCAGCGGCCGCAGTGGGGGCGCCGTGGGCGGTGGTACG
GCCACGGCCAGGGAGCCACCACCAAACCGAGAGGCTCCGAGTGCACAAGA
AGTGGAGCAGGGGGGAGCTGCGGCAGTGGTAGGGGGCGACAGCCCTCTGC
AGCCAACAGACGCACTGGGCAGCGGTACGGCCACGGCCAGGGAGCCACCA
CCAAACCGAGAGGCTCCGAGTGCACAAGAAGCGGGGCAGGGGGGAGCTGC
GGCGGCGGTGGGCGACGACAGCGCTCTACGAAACCGAGAGGCTCAGAGTG
CACAAGAAGCAGAGCA
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