mRNA_S-ischiensis_contig106.1867.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig106.1867.1
Unique NamemRNA_S-ischiensis_contig106.1867.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig106.1867.1 vs. uniprot
Match: D7FS65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS65_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 1.120e-5
Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:  115 RTYMSLRYVLRFGYQHPPLLLPMIDFQRVLRSKFIG 222
            R Y++LR +LRF +QHPPL+ P++ FQRVLR K IG
Sbjct:  283 RRYLTLRSILRFSFQHPPLMFPVVQFQRVLRCKIIG 318
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BLAST of mRNA_S-ischiensis_contig106.1867.1 vs. uniprot
Match: A0A6H5KVB6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVB6_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 1.900e-5
Identity = 24/33 (72.73%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:  283 SLGLPEAYSDLFDRIERHHDAWVVATGHLLLHS 381
            SLGLP AY D+FDRIE    AW+VATGHLLLH+
Sbjct:    4 SLGLPNAYCDIFDRIESRGAAWLVATGHLLLHA 36
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig106.1867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FS65_ECTSI1.120e-561.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVB6_9PHAE1.900e-572.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig106contigS-ischiensis_contig106:104338..105316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size558
Cds size555
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.3985448-CDS-S-ischiensis_contig106:104337..1045571622815566.3985448-CDS-S-ischiensis_contig106:104337..104557Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 104338..104557 +
1695739774.2209053-CDS-S-ischiensis_contig106:104337..1045571695739774.2209053-CDS-S-ischiensis_contig106:104337..104557Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 104338..104557 +
1622815566.4126546-CDS-S-ischiensis_contig106:104980..1053151622815566.4126546-CDS-S-ischiensis_contig106:104980..105315Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 104981..105315 +
1695739774.2301354-CDS-S-ischiensis_contig106:104980..1053151695739774.2301354-CDS-S-ischiensis_contig106:104980..105315Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 104981..105315 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig106.1867.1prot_S-ischiensis_contig106.1867.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig106 104338..105315 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig106.1867.1

>prot_S-ischiensis_contig106.1867.1 ID=prot_S-ischiensis_contig106.1867.1|Name=mRNA_S-ischiensis_contig106.1867.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=185bp
AVEAATAAAAGGGGSKGSKATEGKAGDARNPQALVDEGRTYMSLRYVLRF
GYQHPPLLLPMIDFQRVLRSKFIGTKYWLRRRKPAAERGVSARKSLGLPE
AYSDLFDRIERHHDAWVVATGHLLLHSAAQVRKATARDGKGRRGRGATAA
TAAAAATAAAEVAAEGGCGGTRQEEEGGDDKKDKK
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mRNA from alignment at S-ischiensis_contig106:104338..105316+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig106.1867.1 ID=mRNA_S-ischiensis_contig106.1867.1|Name=mRNA_S-ischiensis_contig106.1867.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=979bp|location=Sequence derived from alignment at S-ischiensis_contig106:104338..105316+ (Schizocladia ischiensis KU_0333)
GCGGTGGAGGCAGCGACGGCGGCGGCGGCGGGGGGGGGTGGCTCCAAGGG
CTCCAAGGCGACAGAAGGCAAGGCAGGGGATGCTCGGAACCCCCAGGCCT
TGGTGGACGAGGGGCGCACGTACATGTCCCTGCGGTATGTGCTGAGGTTC
GGCTACCAGCACCCGCCCCTGCTGCTTCCCATGATCGACTTCCAGCGGGT
CCTGAGGTCCAAGTTCATTGGTGAGACGACATGTGGGTCAGTTTCTGACC
GGCTTGTGGGTTGCCCCACCGCATATTGGTAGTCATCCATCATCCCCCCT
CTATTGTTTCCGTCCCAAAGACCAGGCTTGCGAGGGACCGCAGGTGGCAG
TCGTGGTGTGCCCCCCGCGCAGACAGCCACTTGGGACGCCGAGTGACTCC
AGGGGCGGCCTGAACTTGTGCAGAAATGATTAAAACTACCAATGCATACT
CTGATTTGTTTGTCCCTTGCTCTTGTATTTTGAGTGCAGATGCTCTTGTA
TCTACAGTTGTGCTAGATTTACCCCAGTTTGTTTTTTGCACTTGTGGCTT
CTGCAACTTGCCTGATGAAGTATCCCGGCCACAACGCACAGTTCAAGGAC
CCAACAGACCCTCCTGCGCGTTGCCCCCGCCCCCCCTCCCCAGGCACCAA
GTACTGGCTGCGGAGGCGCAAGCCAGCCGCCGAGCGGGGCGTGTCTGCAC
GCAAGAGCCTGGGTCTCCCGGAGGCCTATTCCGACCTGTTTGACCGCATC
GAGCGCCACCACGACGCCTGGGTGGTGGCCACAGGCCACCTGCTCCTACA
CTCCGCCGCACAAGTCCGCAAAGCCACTGCACGTGACGGCAAGGGCCGTC
GAGGCAGGGGCGCCACCGCCGCCACCGCCGCCGCCGCTGCCACTGCCGCT
GCAGAGGTCGCTGCTGAGGGGGGGTGCGGGGGGACTCGCCAGGAGGAGGA
AGGCGGGGACGACAAGAAGGACAAGAAGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig106:104338..105316+

>mRNA_S-ischiensis_contig106.1867.1 ID=mRNA_S-ischiensis_contig106.1867.1|Name=mRNA_S-ischiensis_contig106.1867.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1110bp|location=Sequence derived from alignment at S-ischiensis_contig106:104338..105316+ (Schizocladia ischiensis KU_0333)
GCGGTGGAGGCAGCGACGGCGGCGGCGGCGGGGGGGGGTGGCTCCAAGGG
CTCCAAGGCGACAGAAGGCAAGGCAGGGGATGCTCGGAACCCCCAGGCCT
TGGTGGACGAGGGGCGCACGTACATGTCCCTGCGGTATGTGCTGAGGTTC
GGCTACCAGCACCCGCCCCTGCTGCTTCCCATGATCGACTTCCAGCGGGT
CCTGAGGTCCAAGTTCATTGGCGGTGGAGGCAGCGACGGCGGCGGCGGCG
GGGGGGGGTGGCTCCAAGGGCTCCAAGGCGACAGAAGGCAAGGCAGGGGA
TGCTCGGAACCCCCAGGCCTTGGTGGACGAGGGGCGCACGTACATGTCCC
TGCGGTATGTGCTGAGGTTCGGCTACCAGCACCCGCCCCTGCTGCTTCCC
ATGATCGACTTCCAGCGGGTCCTGAGGTCCAAGTTCATTGGCACCAAGTA
CTGGCTGCGGAGGCGCAAGCCAGCCGCCGAGCGGGGCGTGTCTGCACGCA
AGAGCCTGGGTCTCCCGGAGGCCTATTCCGACCTGTTTGACCGCATCGAG
CGCCACCACGACGCCTGGGTGGTGGCCACAGGCCACCTGCTCCTACACTC
CGCCGCACAAGTCCGCAAAGCCACTGCACGTGACGGCAAGGGCCGTCGAG
GCAGGGGCGCCACCGCCGCCACCGCCGCCGCCGCTGCCACTGCCGCTGCA
GAGGTCGCTGCTGAGGGGGGGTGCGGGGGGACTCGCCAGGAGGAGGAAGG
CGGGGACGACAAGAAGGACAAGAAGGCACCAAGTACTGGCTGCGGAGGCG
CAAGCCAGCCGCCGAGCGGGGCGTGTCTGCACGCAAGAGCCTGGGTCTCC
CGGAGGCCTATTCCGACCTGTTTGACCGCATCGAGCGCCACCACGACGCC
TGGGTGGTGGCCACAGGCCACCTGCTCCTACACTCCGCCGCACAAGTCCG
CAAAGCCACTGCACGTGACGGCAAGGGCCGTCGAGGCAGGGGCGCCACCG
CCGCCACCGCCGCCGCCGCTGCCACTGCCGCTGCAGAGGTCGCTGCTGAG
GGGGGGTGCGGGGGGACTCGCCAGGAGGAGGAAGGCGGGGACGACAAGAA
GGACAAGAAG
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