mRNA_S-ischiensis_contig106.1863.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig106.1863.1
Unique NamemRNA_S-ischiensis_contig106.1863.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig106.1863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig106contigS-ischiensis_contig106:65350..66894 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size792
Cds size789
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.272634-CDS-S-ischiensis_contig106:65349..658561622815566.272634-CDS-S-ischiensis_contig106:65349..65856Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 65350..65856 +
1695739774.157521-CDS-S-ischiensis_contig106:65349..658561695739774.157521-CDS-S-ischiensis_contig106:65349..65856Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 65350..65856 +
1622815566.2858968-CDS-S-ischiensis_contig106:66611..668931622815566.2858968-CDS-S-ischiensis_contig106:66611..66893Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 66612..66893 +
1695739774.172983-CDS-S-ischiensis_contig106:66611..668931695739774.172983-CDS-S-ischiensis_contig106:66611..66893Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 66612..66893 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig106.1863.1prot_S-ischiensis_contig106.1863.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig106 65350..66893 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig106.1863.1

>prot_S-ischiensis_contig106.1863.1 ID=prot_S-ischiensis_contig106.1863.1|Name=mRNA_S-ischiensis_contig106.1863.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=263bp
RGDVNAASCSRTEASGPLEVHRALSGETDGRQVVAEDPSPPPVSVAIRTV
KATRLLPSLVRALRIKLAIGLVLARLAFVIAAPLALLMCALCVVAAIPLA
IMHAVVMTLTLGHAKTLGVPLGFSAVALRLSLVALLASLVGIISPVFAIG
GAGIAALMVTLESSGFLLQAIFHREIQQVKALAALASNPILVGAISNVVS
NPKDPGAVRDVVHVAATAAGGGGGGGGGGSLAGSAVVGVHRAGRGFVNKL
RWQFPKEIEVAEM
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mRNA from alignment at S-ischiensis_contig106:65350..66894+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig106.1863.1 ID=mRNA_S-ischiensis_contig106.1863.1|Name=mRNA_S-ischiensis_contig106.1863.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1545bp|location=Sequence derived from alignment at S-ischiensis_contig106:65350..66894+ (Schizocladia ischiensis KU_0333)
CGCGGGGACGTCAATGCCGCCTCTTGCTCTCGCACGGAGGCTTCAGGGCC
CCTGGAAGTCCACCGTGCGCTATCAGGAGAAACGGACGGACGCCAAGTGG
TCGCTGAGGACCCTTCCCCGCCGCCTGTGTCAGTCGCCATCCGCACGGTC
AAGGCAACGAGGCTCTTGCCCTCCCTTGTCAGGGCTCTACGAATCAAGCT
TGCCATCGGGCTGGTCTTAGCGCGGCTGGCTTTTGTGATAGCCGCTCCCT
TGGCCCTGCTCATGTGCGCCCTCTGCGTCGTGGCGGCGATCCCCCTTGCC
ATCATGCACGCAGTGGTCATGACGCTGACCCTGGGGCATGCCAAGACTCT
CGGTGTCCCGCTGGGCTTCAGCGCTGTGGCGTTGCGGCTCTCTCTGGTGG
CGCTTCTGGCCAGCCTCGTGGGGATTATCAGCCCTGTGTTTGCCATCGGG
GGAGCTGGGATTGCGGCACTCATGGTCACTCTGGAAAGTTCCGGGTTCCT
TCTCCAGGTGGGGACACGCCCCTGAATGATGCCTGTTCCGTACTCGCTTG
GACGTACTGTACAGACCTCTAGTACTCTAGTAGTGCTCGTACATAGGTAC
ACTGTGCTGTACGCCACCCCCGGCGGAGCCTGCCTAAATGCGAGAGTGAC
AATCTGTGCGTACTGCGTATGCATTGCTGTAGCTGACAACGCCTGGTAGG
CCAAGTGAGGCTTGATTAACAAAAACAAGGTGTTGTGAGACGTGGCCTGC
ACCTCGCACAGTGCTTTACACGCCTGTTTCGCCGATTTGGGAAGTGTCGG
GTAGTGGGTGGTCTCTGGGCAACGAGAAGTACGTGATGAGTACTTCCGGT
CGTGCTCGAGTACATGTAATTGAAACAAGTACTCGAGGACAAGTAGCAAC
TACACTACAGTACTTGTAAGATGGAAGAGAAACGCGGCGGTTCACAGCTC
TTTTTCTGCCTTGGCACCGTCGTGCACATGAGAATATTGGTCATCCGCGC
AAATTCCTCGACTACAGATAGTGTACTGTATGTGTGCAGGATGCCTGTGC
CACGGTAACAGAGGGCTGTGCTTGTTCGCATCTGTCGTCTGTAGCCTATC
GTACCGTACTTTGTACCGAAAGGATACTCTACTCTACATTGCATTGCACA
GGGCAGGCTGTACACTCGGCAGAGGCCCACTCTCGAAGAAACGGGATGCA
CAGCATTTCATTGTCACTTTGCATACACACAAGCCACACCCCTTCCCCCC
CCCCCAATCCAGGCAATTTTCCACAGGGAAATACAGCAGGTGAAGGCCCT
GGCAGCGCTGGCCAGCAACCCCATCCTCGTCGGGGCTATCTCCAACGTGG
TGTCCAATCCCAAGGACCCAGGCGCTGTCCGGGATGTTGTGCACGTTGCA
GCCACAGCCGCGGGTGGCGGCGGCGGCGGCGGCGGCGGCGGCAGTCTGGC
CGGCAGCGCGGTGGTTGGGGTGCATCGCGCCGGCCGCGGGTTCGTGAATA
AGCTGAGGTGGCAATTCCCCAAGGAGATTGAGGTTGCCGAGATGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig106:65350..66894+

>mRNA_S-ischiensis_contig106.1863.1 ID=mRNA_S-ischiensis_contig106.1863.1|Name=mRNA_S-ischiensis_contig106.1863.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1578bp|location=Sequence derived from alignment at S-ischiensis_contig106:65350..66894+ (Schizocladia ischiensis KU_0333)
CGCGGGGACGTCAATGCCGCCTCTTGCTCTCGCACGGAGGCTTCAGGGCC
CCTGGAAGTCCACCGTGCGCTATCAGGAGAAACGGACGGACGCCAAGTGG
TCGCTGAGGACCCTTCCCCGCCGCCTGTGTCAGTCGCCATCCGCACGGTC
AAGGCAACGAGGCTCTTGCCCTCCCTTGTCAGGGCTCTACGAATCAAGCT
TGCCATCGGGCTGGTCTTAGCGCGGCTGGCTTTTGTGATAGCCGCTCCCT
TGGCCCTGCTCATGTGCGCCCTCTGCGTCGTGGCGGCGATCCCCCTTGCC
ATCATGCACGCAGTGGTCATGACGCTGACCCTGGGGCATGCCAAGACTCT
CGGTGTCCCGCTGGGCTTCAGCGCTGTGGCGTTGCGGCTCTCTCTGGTGG
CGCTTCTGGCCAGCCTCGTGGGGATTATCAGCCCTGTGTTTGCCATCGGG
GGAGCTGGGATTGCGGCACTCATGGTCACTCTGGAAAGTTCCGGGTTCCT
TCTCCAGCGCGGGGACGTCAATGCCGCCTCTTGCTCTCGCACGGAGGCTT
CAGGGCCCCTGGAAGTCCACCGTGCGCTATCAGGAGAAACGGACGGACGC
CAAGTGGTCGCTGAGGACCCTTCCCCGCCGCCTGTGTCAGTCGCCATCCG
CACGGTCAAGGCAACGAGGCTCTTGCCCTCCCTTGTCAGGGCTCTACGAA
TCAAGCTTGCCATCGGGCTGGTCTTAGCGCGGCTGGCTTTTGTGATAGCC
GCTCCCTTGGCCCTGCTCATGTGCGCCCTCTGCGTCGTGGCGGCGATCCC
CCTTGCCATCATGCACGCAGTGGTCATGACGCTGACCCTGGGGCATGCCA
AGACTCTCGGTGTCCCGCTGGGCTTCAGCGCTGTGGCGTTGCGGCTCTCT
CTGGTGGCGCTTCTGGCCAGCCTCGTGGGGATTATCAGCCCTGTGTTTGC
CATCGGGGGAGCTGGGATTGCGGCACTCATGGTCACTCTGGAAAGTTCCG
GGTTCCTTCTCCAGGCAATTTTCCACAGGGAAATACAGCAGGTGAAGGCC
CTGGCAGCGCTGGCCAGCAACCCCATCCTCGTCGGGGCTATCTCCAACGT
GGTGTCCAATCCCAAGGACCCAGGCGCTGTCCGGGATGTTGTGCACGTTG
CAGCCACAGCCGCGGGTGGCGGCGGCGGCGGCGGCGGCGGCGGCAGTCTG
GCCGGCAGCGCGGTGGTTGGGGTGCATCGCGCCGGCCGCGGGTTCGTGAA
TAAGCTGAGGTGGCAATTCCCCAAGGAGATTGAGGTTGCCGAGATGGCAA
TTTTCCACAGGGAAATACAGCAGGTGAAGGCCCTGGCAGCGCTGGCCAGC
AACCCCATCCTCGTCGGGGCTATCTCCAACGTGGTGTCCAATCCCAAGGA
CCCAGGCGCTGTCCGGGATGTTGTGCACGTTGCAGCCACAGCCGCGGGTG
GCGGCGGCGGCGGCGGCGGCGGCGGCAGTCTGGCCGGCAGCGCGGTGGTT
GGGGTGCATCGCGCCGGCCGCGGGTTCGTGAATAAGCTGAGGTGGCAATT
CCCCAAGGAGATTGAGGTTGCCGAGATG
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