mRNA_S-ischiensis_contig106.1862.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig106.1862.1
Unique NamemRNA_S-ischiensis_contig106.1862.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig106.1862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig106contigS-ischiensis_contig106:64539..65070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size533
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.6461177-CDS-S-ischiensis_contig106:64538..648801622815566.6461177-CDS-S-ischiensis_contig106:64538..64880Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 64539..64880 +
1695739774.3283632-CDS-S-ischiensis_contig106:64538..648801695739774.3283632-CDS-S-ischiensis_contig106:64538..64880Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 64539..64880 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.6602802-UTR-S-ischiensis_contig106:64880..650701622815566.6602802-UTR-S-ischiensis_contig106:64880..65070Schizocladia ischiensis KU_0333UTRS-ischiensis_contig106 64881..65070 +
1695739774.3416-UTR-S-ischiensis_contig106:64880..650701695739774.3416-UTR-S-ischiensis_contig106:64880..65070Schizocladia ischiensis KU_0333UTRS-ischiensis_contig106 64881..65070 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig106.1862.1prot_S-ischiensis_contig106.1862.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig106 64539..64880 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig106.1862.1

>prot_S-ischiensis_contig106.1862.1 ID=prot_S-ischiensis_contig106.1862.1|Name=mRNA_S-ischiensis_contig106.1862.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=114bp
SSACRRLTFETEDARKGFALKVAARVGLLWGTLKPASSPAPAASSSGASC
SLAGDALFFRLVRRPLLVGGEDISRRSFSCWRSVSRSALSAMARSRDFPR
GRAAGKSNIGLAL*
back to top

mRNA from alignment at S-ischiensis_contig106:64539..65070+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig106.1862.1 ID=mRNA_S-ischiensis_contig106.1862.1|Name=mRNA_S-ischiensis_contig106.1862.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=532bp|location=Sequence derived from alignment at S-ischiensis_contig106:64539..65070+ (Schizocladia ischiensis KU_0333)
TCGTCGGCGTGCAGGCGGCTCACTTTCGAAACGGAAGATGCCAGGAAGGG
ATTCGCCCTCAAGGTCGCCGCTCGCGTCGGCCTCTTGTGGGGCACACTTA
AACCCGCGTCGTCGCCCGCTCCAGCCGCGTCCTCCTCCGGCGCCAGCTGC
TCCCTCGCAGGGGACGCGCTCTTCTTCCGCTTGGTGCGGCGGCCATTGCT
GGTGGGCGGGGAGGATATCTCCAGAAGAAGCTTCAGCTGCTGGCGTTCAG
TGAGTCGTTCTGCCCTTTCCGCCATGGCTAGAAGCCGGGACTTTCCAAGA
GGAAGAGCGGCGGGAAAAAGTAATATTGGTTTGGCGCTGTGAGGTCCAGG
CCAAGAAGGCGCTACAATAGATCGAATTCGCAGGGCCGCAGATTACCCAG
CCGAAGGTATGGGGTTTCCCTGTTGACCAGTGACCACACGGGGCTAAGCC
CCAGCGCTTCCCAAAATCAGGCCATCGCCTCCAGGCGGCGCCACCTCGGC
TGGGACGCCCAGAGCCGTCGCGCCGAGTCCTG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig106:64539..65070+

>mRNA_S-ischiensis_contig106.1862.1 ID=mRNA_S-ischiensis_contig106.1862.1|Name=mRNA_S-ischiensis_contig106.1862.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=684bp|location=Sequence derived from alignment at S-ischiensis_contig106:64539..65070+ (Schizocladia ischiensis KU_0333)
TCGTCGGCGTGCAGGCGGCTCACTTTCGAAACGGAAGATGCCAGGAAGGG
ATTCGCCCTCAAGGTCGCCGCTCGCGTCGGCCTCTTGTGGGGCACACTTA
AACCCGCGTCGTCGCCCGCTCCAGCCGCGTCCTCCTCCGGCGCCAGCTGC
TCCCTCGCAGGGGACGCGCTCTTCTTCCGCTTGGTGCGGCGGCCATTGCT
GGTGGGCGGGGAGGATATCTCCAGAAGAAGCTTCAGCTGCTGGCGTTCAG
TGAGTCGTTCTGCCCTTTCCGCCATGGCTAGAAGCCGGGACTTTCCAAGA
GGAAGAGCGGCGGGAAAAAGTAATATTGGTTTGGCGCTGTGATCGTCGGC
GTGCAGGCGGCTCACTTTCGAAACGGAAGATGCCAGGAAGGGATTCGCCC
TCAAGGTCGCCGCTCGCGTCGGCCTCTTGTGGGGCACACTTAAACCCGCG
TCGTCGCCCGCTCCAGCCGCGTCCTCCTCCGGCGCCAGCTGCTCCCTCGC
AGGGGACGCGCTCTTCTTCCGCTTGGTGCGGCGGCCATTGCTGGTGGGCG
GGGAGGATATCTCCAGAAGAAGCTTCAGCTGCTGGCGTTCAGTGAGTCGT
TCTGCCCTTTCCGCCATGGCTAGAAGCCGGGACTTTCCAAGAGGAAGAGC
GGCGGGAAAAAGTAATATTGGTTTGGCGCTGTGA
back to top