mRNA_S-ischiensis_contig106.1860.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig106.1860.1
Unique NamemRNA_S-ischiensis_contig106.1860.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig106.1860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig106contigS-ischiensis_contig106:58120..58547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size429
Cds size405
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.6038132-UTR-S-ischiensis_contig106:58119..581421622815566.6038132-UTR-S-ischiensis_contig106:58119..58142Schizocladia ischiensis KU_0333UTRS-ischiensis_contig106 58120..58142 +
1695739774.3041158-UTR-S-ischiensis_contig106:58119..581421695739774.3041158-UTR-S-ischiensis_contig106:58119..58142Schizocladia ischiensis KU_0333UTRS-ischiensis_contig106 58120..58142 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.613459-CDS-S-ischiensis_contig106:58142..585471622815566.613459-CDS-S-ischiensis_contig106:58142..58547Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 58143..58547 +
1695739774.314053-CDS-S-ischiensis_contig106:58142..585471695739774.314053-CDS-S-ischiensis_contig106:58142..58547Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 58143..58547 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig106.1860.1prot_S-ischiensis_contig106.1860.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig106 58143..58547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig106.1860.1

>prot_S-ischiensis_contig106.1860.1 ID=prot_S-ischiensis_contig106.1860.1|Name=mRNA_S-ischiensis_contig106.1860.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=135bp
MAGCTPTRHCTRRRRSRRSRRSRRRRRPRCTHRRRHRGGSKHLGGGSTSR
NLGRRQHPELQQLLGGGFGRVRHMMMIMMMIAMGHAADKGGCRGPPIPRR
RLLGASPRTRLLALHPLPQQLLQPQPLGRRHAHAS
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mRNA from alignment at S-ischiensis_contig106:58120..58547+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig106.1860.1 ID=mRNA_S-ischiensis_contig106.1860.1|Name=mRNA_S-ischiensis_contig106.1860.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=428bp|location=Sequence derived from alignment at S-ischiensis_contig106:58120..58547+ (Schizocladia ischiensis KU_0333)
GCCGTCTGGACCAGGTCGCAGTCATGGCGGGATGTACCCCCACCCGCCAC
TGTACCCGCCGCCGCCGCAGCCGCCGCAGCCGCCGCAGCCGCCGCAGGCG
TCGTCCCCGCTGCACCCACCGCCGTCGACACCGCGGCGGCAGCAAGCACC
TCGGCGGCGGCAGCACCAGTAGAAATCTTGGACGCCGCCAGCACCCGGAG
CTTCAGCAGCTGCTTGGGGGAGGCTTTGGTCGCGTCCGCCACATGATGAT
GATAATGATGATGATCGCCATGGGCCATGCCGCCGACAAGGGGGGGTGCA
GAGGCCCTCCCATTCCCCGCAGACGCCTGCTGGGCGCCAGCCCGCGTACA
CGCCTCCTGGCTCTGCACCCGCTGCCTCAGCAGCTTCTTCAGCCCCAGCC
TCTTGGGCGGCGCCATGCCCACGCCAGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig106:58120..58547+

>mRNA_S-ischiensis_contig106.1860.1 ID=mRNA_S-ischiensis_contig106.1860.1|Name=mRNA_S-ischiensis_contig106.1860.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=810bp|location=Sequence derived from alignment at S-ischiensis_contig106:58120..58547+ (Schizocladia ischiensis KU_0333)
ATGGCGGGATGTACCCCCACCCGCCACTGTACCCGCCGCCGCCGCAGCCG
CCGCAGCCGCCGCAGCCGCCGCAGGCGTCGTCCCCGCTGCACCCACCGCC
GTCGACACCGCGGCGGCAGCAAGCACCTCGGCGGCGGCAGCACCAGTAGA
AATCTTGGACGCCGCCAGCACCCGGAGCTTCAGCAGCTGCTTGGGGGAGG
CTTTGGTCGCGTCCGCCACATGATGATGATAATGATGATGATCGCCATGG
GCCATGCCGCCGACAAGGGGGGGTGCAGAGGCCCTCCCATTCCCCGCAGA
CGCCTGCTGGGCGCCAGCCCGCGTACACGCCTCCTGGCTCTGCACCCGCT
GCCTCAGCAGCTTCTTCAGCCCCAGCCTCTTGGGCGGCGCCATGCCCACG
CCAGCATGGCGGGATGTACCCCCACCCGCCACTGTACCCGCCGCCGCCGC
AGCCGCCGCAGCCGCCGCAGCCGCCGCAGGCGTCGTCCCCGCTGCACCCA
CCGCCGTCGACACCGCGGCGGCAGCAAGCACCTCGGCGGCGGCAGCACCA
GTAGAAATCTTGGACGCCGCCAGCACCCGGAGCTTCAGCAGCTGCTTGGG
GGAGGCTTTGGTCGCGTCCGCCACATGATGATGATAATGATGATGATCGC
CATGGGCCATGCCGCCGACAAGGGGGGGTGCAGAGGCCCTCCCATTCCCC
GCAGACGCCTGCTGGGCGCCAGCCCGCGTACACGCCTCCTGGCTCTGCAC
CCGCTGCCTCAGCAGCTTCTTCAGCCCCAGCCTCTTGGGCGGCGCCATGC
CCACGCCAGC
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