mRNA_S-ischiensis_contig105.1853.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig105.1853.1
Unique NamemRNA_S-ischiensis_contig105.1853.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig105.1853.1 vs. uniprot
Match: A0A151SR20_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SR20_CAJCA)

HSP 1 Score: 199 bits (506), Expect = 3.750e-56
Identity = 114/268 (42.54%), Postives = 161/268 (60.07%), Query Frame = 3
Query:  774 QKKYADDILHRFGRDSCNSVPTPGDFDNFHPVGQTLL-----ESTDHSIYREIIGSLLYLCQLTRPDISYAVMQLSRVVSKPYAMHMAAAKRLLRYLKGTTTLGIKYLCNTRPSTTPVLEGYCDANYGGDLATRKSCTGYTYFLAQGPITWYSKLQPLVAQSSTESEYISLAHVGNEATYLRDLLSSLGAEQQGPTVIYEDNRSAIHLVRSK*WSSHTKHIAIRYHRIRQLITDNIVDLEHIGTLSQRADCLTKQLKGQHFRDIRELL 1562
            QKKYA +IL RF  ++CN V TP +       G  L      E  D + ++ I+GSL+YL   TRPDI YAV  +SR + +P  +H+ AAKR+ RYLKGTT LG+ Y    +     +L G+ D+NY GD+  R+S +G+ + +  G I+W SK Q +V  S+TE+E+I+ A    +A +LR +L  L   QQGPTVI+ DN S I L R+      +KHI +RYH +R L+ + I+DL +  +  Q AD LTK LK + F  +R LL
Sbjct:   40 QKKYAHEILERFNMENCNPVGTPTE------PGLKLSKDLDGERVDSTYFKRIVGSLMYLTT-TRPDIMYAVCLISRYMERPTELHLKAAKRVFRYLKGTTDLGVFY----KKINGSILTGFTDSNYAGDMDDRRSTSGHVFMIGSGAISWASKKQQVVTLSTTEAEFIAAATSACQAIWLRRILEELHFYQQGPTVIHCDNSSTIKLSRNPILHGRSKHIDVRYHFLRDLVIEKIIDLVYCRSEDQVADILTKPLKLEAFEKLRGLL 296          
BLAST of mRNA_S-ischiensis_contig105.1853.1 vs. uniprot
Match: A0A7D9I9A7_PARCT (Uncharacterized protein n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9I9A7_PARCT)

HSP 1 Score: 196 bits (498), Expect = 2.700e-55
Identity = 107/275 (38.91%), Postives = 159/275 (57.82%), Query Frame = 3
Query:  738 KHNRDLRTLHLRQKKYADDILHRFGRDSCNSVPTPGDFDNFHPVGQTLLESTDHSIYREIIGSLLYLCQLTRPDISYAVMQLSRVVSKPYAMHMAAAKRLLRYLKGTTTLGIKYLCNTRPSTTPVLEGYCDANYGGDLATRKSCTGYTYFLAQGPITWYSKLQPLVAQSSTESEYISLAHVGNEATYLRDLLSSLGAEQQGPTVIYEDNRSAIHLVRSK*WSSHTKHIAIRYHRIRQLITDNIVDLEHIGTLSQRADCLTKQLKGQHFRDIRELL 1562
            K +R  +TL + Q+KY + +++RFG   CN V TP +            E  +   Y++ IG L Y+   TRPDI+ AV  LS+ +S P   H    KRLLRY+KGT T G+K++ N        L GY DAN+ GD+ TR+S +GY + +A   I+W SK Q  VA+S+TE+E+++L+     A +LR LLS LG    GPT+I EDN+ AI + ++  + + TKHI I ++ IR+ I    + +E+  T    AD +TK L  + F  +R L+
Sbjct:    4 KRDRAKKTLFISQEKYLEGVINRFGMQDCNPVSTPLETGKTFQKRADDEEPCNKETYQQAIGCLTYVSTSTRPDIAAAVGLLSQYMSNPSKDHWLGIKRLLRYIKGTLTYGLKFVANKNECD---LHGYADANWAGDVDTRRSISGYIFKVADATISWSSKKQSTVAKSTTEAEFVALSQACQGAVWLRRLLSGLGCNTDGPTLIKEDNQGAIEIAKNPKFHNRTKHIDITFYFIRERIESREIKVEYCSTHDMLADIMTKALPRERFEKLRSLM 275          
BLAST of mRNA_S-ischiensis_contig105.1853.1 vs. uniprot
Match: A0A5N5FQC6_9ROSA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5FQC6_9ROSA)

HSP 1 Score: 196 bits (499), Expect = 3.980e-55
Identity = 112/269 (41.64%), Postives = 156/269 (57.99%), Query Frame = 3
Query:  774 QKKYADDILHRFGRDSCNSVPTPGDFDNFHPVGQTLL------ESTDHSIYREIIGSLLYLCQLTRPDISYAVMQLSRVVSKPYAMHMAAAKRLLRYLKGTTTLGIKYLCNTRPSTTPVLEGYCDANYGGDLATRKSCTGYTYFLAQGPITWYSKLQPLVAQSSTESEYISLAHVGNEATYLRDLLSSLGAEQQGPTVIYEDNRSAIHLVRSK*WSSHTKHIAIRYHRIRQLITDNIVDLEHIGTLSQRADCLTKQLKGQHFRDIRELL 1562
            QK+YA ++L RF  ++CN V  P        V  T L      E  D + Y++I+GSL+YL   TRPD  + V  +SR +  P  MH+AAAKR+LRYLKGT +LGI Y    +      L GY D++Y GDL  RKS +GY + L+ G + W SK QP+V  S+TE+E+I+ A     AT+LR ++  LG  QQ  T ++ DN S I L ++      +KHI +R+H +R++  + IV L H  T  Q AD LTK LK   F  +R L+
Sbjct:   40 QKRYAQEVLERFKMENCNPVHNP-------IVPGTKLTKDVTGEKVDSTFYKQIVGSLMYLTA-TRPDTMFVVSLISRFMESPTEMHLAAAKRVLRYLKGTISLGILY----KKGGCTELRGYSDSDYAGDLDDRKSTSGYLFMLSSGAVCWSSKKQPVVTLSTTEAEFIAAASCACHATWLRRIMKELGQAQQDSTTVFCDNSSTIKLSKNPVMHGRSKHIDVRFHFLREMTKNKIVQLVHCNTQEQVADILTKPLKTDAFLKMRGLM 296          
BLAST of mRNA_S-ischiensis_contig105.1853.1 vs. uniprot
Match: A0A5N5I7K4_9ROSA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5I7K4_9ROSA)

HSP 1 Score: 196 bits (497), Expect = 7.380e-55
Identity = 109/267 (40.82%), Postives = 157/267 (58.80%), Query Frame = 3
Query:  762 LHLRQKKYADDILHRFGRDSCNSVPTPGDFDNFHPVGQTLLESTDHSIYREIIGSLLYLCQLTRPDISYAVMQLSRVVSKPYAMHMAAAKRLLRYLKGTTTLGIKYLCNTRPSTTPVLEGYCDANYGGDLATRKSCTGYTYFLAQGPITWYSKLQPLVAQSSTESEYISLAHVGNEATYLRDLLSSLGAEQQGPTVIYEDNRSAIHLVRSK*WSSHTKHIAIRYHRIRQLITDNIVDLEHIGTLSQRADCLTKQLKGQHFRDIRELL 1562
            + + Q+KYA +IL RF    CNSV  P     F           D ++Y++++GSL+YL   TRPD+ + V  +SR + +P  +HM  AKR+LRY+KGTT LGI Y    +   T  L GY D++Y GD   RKS +GY + +  G ++W SK QP+V  S+TE+E+I+ A    +  +LR +L SL  EQ+ P V+Y DN S I L R+      +KHI +R+H +R L+ D +++L H  +L Q AD  TK LK   F  +R LL
Sbjct:   36 IFISQRKYAQEILERFNMHQCNSVLNPI-VPGFKLTKDEGGIKVDGTVYKQMVGSLMYLTA-TRPDLMFVVSLISRYMERPTEVHMQTAKRVLRYVKGTTDLGIFY----KKGGTEELIGYTDSDYAGDQDDRKSTSGYVFMVNMGAVSWSSKKQPVVTLSTTEAEFIAAASSACQVVWLRRILESLNHEQRSPIVVYCDNISTIKLSRNPVLHGRSKHIDVRFHFLRNLVKDEVLELVHCSSLEQVADIFTKPLKVDLFLKLRGLL 296          
BLAST of mRNA_S-ischiensis_contig105.1853.1 vs. uniprot
Match: A0A2P6R5Z2_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6R5Z2_ROSCH)

HSP 1 Score: 196 bits (498), Expect = 1.190e-54
Identity = 110/271 (40.59%), Postives = 160/271 (59.04%), Query Frame = 3
Query:  762 LHLRQKKYADDILHRFGRDSCNSVPTPGDFDNFHPVGQTLLEST----DHSIYREIIGSLLYLCQLTRPDISYAVMQLSRVVSKPYAMHMAAAKRLLRYLKGTTTLGIKYLCNTRPSTTPVLEGYCDANYGGDLATRKSCTGYTYFLAQGPITWYSKLQPLVAQSSTESEYISLAHVGNEATYLRDLLSSLGAEQQGPTVIYEDNRSAIHLVRSK*WSSHTKHIAIRYHRIRQLITDNIVDLEHIGTLSQRADCLTKQLKGQHFRDIRELL 1562
            + + Q+KYA ++L RF    CNSV TP D     P  +   +S     D +++++I+GSL+YL   TRPDI YAV  +SR +  P  +H+ AAKR+ RYLKGT   G+ Y   T    +  L G+ D++Y GD+  RKS +G  + L  G ++W SK QP+V  S+TE+E+++      +A +LR LL  LG  QQGPT IY DN SAI L ++      +KHI +RYH +R L  D ++++ +  +  Q AD +TK LK   F  +R LL
Sbjct:   36 IFVTQRKYAQEVLERFQMKDCNSVTTPTD-----PTIKLKKDSEGKKIDATLFKQIVGSLMYLTT-TRPDIMYAVSLISRYMESPTELHLFAAKRIFRYLKGTIDFGMWYKRETEAGMSVGLYGFTDSDYAGDVDDRKSTSGNVFLLGSGVVSWGSKKQPIVTLSTTEAEFVAATSGACQAIWLRKLLGVLGNNQQGPTDIYCDNVSAIKLSKNPVLHGRSKHIDVRYHFLRDLCKDGVINVIYCKSEDQIADIMTKPLKTAVFEKLRSLL 300          
BLAST of mRNA_S-ischiensis_contig105.1853.1 vs. uniprot
Match: A0A0S7JP25_9TELE (POLX n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7JP25_9TELE)

HSP 1 Score: 196 bits (499), Expect = 2.290e-54
Identity = 126/334 (37.72%), Postives = 181/334 (54.19%), Query Frame = 3
Query:  558 LRVHQEGEKIGPA*FID-VHLRGRSTCHGG*SNSVETLLKSMSSRFD-KTLAQLPAC*AWRYKHNRDLRTLHLRQKKYADDILHRFGRDSCNSVPTPGDFDNFHPVGQTLLESTDHSIYREIIGSLLYLCQLTRPDISYAVMQLSRVVSKPYAMHMAAAKRLLRYLKGTTTLGIKYLCNTRPSTTPVLEGYCDANYGGDLATRKSCTGYTYFLAQGPITWYSKLQPLVAQSSTESEYISLAHVGNEATYLRDLLSSLGAEQQGPTVIYEDNRSAIHLVRSK*WSSHTKHIAIRYHRIRQLITDNIVDLEHIGTLSQRADCLTKQLKGQHFRDIR 1553
            +R+ QE E I  A ++D + L   ST       S++ L  ++  R+  K L +L          +++   + L QK+Y + IL ++G D  N V TP D          +    D S Y+ ++GSLLY    TRPDI+ AV  +S+  + P   H+ A KR+LRYLKGT  L +K+ C         L G+ DA++ GDL  R S TG  + L+ G ++W SK Q  VA S+ E+EY++L+    E T+LR LL+ LG   + PTVI EDN+ AI + ++    S TKHI IRYH IR+ + D  V LE+  T   +AD LTK L  Q F + R
Sbjct:   41 VRLSQELEII--AVYVDDLMLITEST------ESMDELKLTLQERYKMKDLGELSYILGISVIQDKEKNCICLHQKQYIETILKKYGMDKANPVATPADISVKLKKDDGVSNPVDPSTYQSMVGSLLYAAMTTRPDIAQAVSAVSKFNANPNTAHLTAVKRILRYLKGTVNLALKFDCAGNKD----LIGFSDADWAGDLDDRHSTTGNIFLLSGGAVSWLSKKQATVALSTAEAEYVALSQAAQEGTWLRRLLNDLGMVTK-PTVILEDNQGAIAIAKNPVDHSRTKHIDIRYHYIRECVQDGEVKLEYCPTDKMKADILTKPLARQKFENFR 361          
BLAST of mRNA_S-ischiensis_contig105.1853.1 vs. uniprot
Match: UPI0009AB427F (uncharacterized protein LOC109950541 n=1 Tax=Prunus persica TaxID=3760 RepID=UPI0009AB427F)

HSP 1 Score: 194 bits (492), Expect = 8.470e-54
Identity = 114/268 (42.54%), Postives = 155/268 (57.84%), Query Frame = 3
Query:  774 QKKYADDILHRFGRDSCNSVPTPGDFDNFHPVGQTLLES-----TDHSIYREIIGSLLYLCQLTRPDISYAVMQLSRVVSKPYAMHMAAAKRLLRYLKGTTTLGIKYLCNTRPSTTPVLEGYCDANYGGDLATRKSCTGYTYFLAQGPITWYSKLQPLVAQSSTESEYISLAHVGNEATYLRDLLSSLGAEQQGPTVIYEDNRSAIHLVRSK*WSSHTKHIAIRYHRIRQLITDNIVDLEHIGTLSQRADCLTKQLKGQHFRDIRELL 1562
            QKKYA DIL+RF  D C    TP ++      G  L +       D + Y++IIGSL+YL   TRPDI YAV  +SR + KP  MH+ AAKR+LRY+KGT   G+ Y    +        GY D++Y GD+  RKS +G+ + L  G I+W SK Q +V  SSTE+EY++ A    +A +LR +   LG  Q+GPT IY DN S I L R+      +KHI +R+H +R L +D  + LE+  +  Q AD LTK LK   F  +R +L
Sbjct:   57 QKKYAQDILNRFQMDDCKPFGTPAEY------GLKLCKDKGGKEVDSTFYKQIIGSLMYLTY-TRPDIMYAVSLVSRYMEKPTEMHLNAAKRILRYVKGTIDYGVFY----KREDGSGFVGYTDSDYAGDIDDRKSTSGHIFLLNSGAISWSSKKQQIVTLSSTEAEYVAAAASSCQAMWLRKIFEVLGNVQKGPTTIYCDNISTIKLSRNPVMHGRSKHIDVRFHFLRDLCSDEKIVLEYCKSGEQVADILTKPLKQPAFEKLRSML 313          
BLAST of mRNA_S-ischiensis_contig105.1853.1 vs. uniprot
Match: H3GB69_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB69_PHYRM)

HSP 1 Score: 192 bits (489), Expect = 1.410e-53
Identity = 112/302 (37.09%), Postives = 168/302 (55.63%), Query Frame = 3
Query:  657 VETLLKSMSSRFD-KTLAQLPAC*AWRYKHNRDLRTLHLRQKKYADDILHRFGRDSCNSVPTPGDFDNFHPVGQTLLESTDHSI-----YREIIGSLLYLCQLTRPDISYAVMQLSRVVSKPYAMHMAAAKRLLRYLKGTTTLGIKYLCNTRPSTTPVLEGYCDANYGGDLATRKSCTGYTYFLAQGPITWYSKLQPLVAQSSTESEYISLAHVGNEATYLRDLLSSLGAEQQGPTVIYEDNRSAIHLVRSK*WSSHTKHIAIRYHRIRQLITDNIVDLEHIGTLSQRADCLTKQLKGQHFR 1544
            +  + K++   F  K L +L  C       NRD +T+ + Q+ Y   +  +FG + C +V TP D ++     + +  S D        YRE++G+L+YL   TRPDI+ AV ++++   +    H  AAKR+L+YLK T  LG+ +   T+      L GY DAN+ GDL TR+S TGY +FL    I+W SK QP VA SSTE+EY++L +   EA +LR LL  +G E  G T  ++DN+  I L ++  + S TKHI ++YH +R+ + D ++ LE+  T    AD  TK L     R
Sbjct:   10 IGEIKKALKREFSIKELGELKYCLGIEIHRNRDDKTIVMNQRAYIQRLAEKFGVEKCKAVHTPADSNS-----KLVKPSEDEDFVPRYPYRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDLGLVFNGGTKGE----LIGYADANWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVGATTFFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLEYKPTDEMIADGFTKALARPKHR 302          
BLAST of mRNA_S-ischiensis_contig105.1853.1 vs. uniprot
Match: A0A4Y1REE4_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1REE4_PRUDU)

HSP 1 Score: 195 bits (496), Expect = 3.610e-53
Identity = 115/268 (42.91%), Postives = 164/268 (61.19%), Query Frame = 3
Query:  774 QKKYADDILHRFGRDSCNSVPTP---GDFDNFHPVGQTLLESTDHSIYREIIGSLLYLCQLTRPDISYAVMQLSRVVSKPYAMHMAAAKRLLRYLKGTTTLGIKYLCNT--RPSTTPVLEGYCDANYGGDLATRKSCTGYTYFLAQGPITWYSKLQPLVAQSSTESEYISLAHVGNEATYLRDLLSSLGAEQQGPTVIYEDNRSAIHLVRSK*WSSHTKHIAIRYHRIRQLITDNIVDLEHIGTLSQRADCLTKQLKGQHFRDIRELL 1562
            QKKYA++IL RF  + CNSV  P   G   N   VG   ++ST    +++I+GSL+YL   TRPD+ +AV  +SR +  P  +H   AKR+LRYLKGTT LG+ Y   T  +      L G+ D++Y GDL  RKS +GY + L+   ++W SK QP+V  S+TE+E+I+      +A +LR LL  L  +Q  PTVI+ DN SAI L R+      +KHI +R+H +R L+ + +++LEH  +  Q AD LTK LK + F  +R+LL
Sbjct:  132 QKKYAEEILKRFHMEDCNSVQNPIVPGTKLN-KDVGGREVDSTH---FKQIVGSLMYLTA-TRPDLMFAVSLISRYMESPTELHYQTAKRVLRYLKGTTDLGLFYKKETINKKEAGDELMGFSDSDYAGDLDDRKSTSGYVFMLSSAAVSWSSKKQPVVTLSTTEAEFIAATSSACQAVWLRRLLEELCFKQDKPTVIFCDNSSAIKLSRNPVMHGRSKHIDVRFHFLRDLVKNEVIELEHCPSNMQVADILTKPLKLEAFVKMRKLL 394          
BLAST of mRNA_S-ischiensis_contig105.1853.1 vs. uniprot
Match: A0A392LXU4_9FABA (Copia-type polyprotein n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392LXU4_9FABA)

HSP 1 Score: 191 bits (485), Expect = 5.260e-53
Identity = 107/269 (39.78%), Postives = 160/269 (59.48%), Query Frame = 3
Query:  762 LHLRQKKYADDILHRFGRDSCNSVPTPGDFDNFHPVGQTLLEST----DHSIYREIIGSLLYLCQLTRPDISYAVMQLSRVVSKPYAMHMAAAKRLLRYLKGTTTLGIKYLCNTRPSTTPVLEGYCDANYGGDLATRKSCTGYTYFLAQGPITWYSKLQPLVAQSSTESEYISLAHVGNEATYLRDLLSSLGAEQQGPTVIYEDNRSAIHLVRSK*WSSHTKHIAIRYHRIRQLITDNIVDLEHIGTLSQRADCLTKQLKGQHFRDIRE 1556
            + + Q+KY  +IL RFG   CN V +P       P  + + + T    D ++Y+++IG L+YL   TRPD++YAV   +R + +P  MH+A  KR+LRYLKGT TLG+ Y C  R     VL+G+ D++Y GD   RKS +GY + L +  I W SK QP+V  S+TE+E++S A    +  +L+++LS L  EQ G   I  DN S+I L ++       KHI +RYH +R L  D +++L++  +  Q AD +TK LK + F  +RE
Sbjct:   16 IFIHQQKYGTEILQRFGMQDCNKVCSP-----IVPGCKLVKDETALACDATLYKQMIGCLMYLLA-TRPDMTYAVCLAARYMERPTEMHVAVVKRILRYLKGTLTLGVLYKC--RNGNDFVLQGWSDSDYAGDYDDRKSTSGYIFTLGESAICWSSKKQPIVTLSTTEAEFVSAASCACQCLWLKNILSHLLVEQAGCVCINCDNSSSIKLSKNPIMHGRCKHIDVRYHFLRDLSRDGVIELKYCKSQDQLADIMTKPLKLESFCRLRE 276          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig105.1853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A151SR20_CAJCA3.750e-5642.54Retrovirus-related Pol polyprotein from transposon... [more]
A0A7D9I9A7_PARCT2.700e-5538.91Uncharacterized protein n=2 Tax=Paramuricea clavat... [more]
A0A5N5FQC6_9ROSA3.980e-5541.64Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N5I7K4_9ROSA7.380e-5540.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2P6R5Z2_ROSCH1.190e-5440.59Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A0S7JP25_9TELE2.290e-5437.72POLX n=2 Tax=Poeciliopsis prolifica TaxID=188132 R... [more]
UPI0009AB427F8.470e-5442.54uncharacterized protein LOC109950541 n=1 Tax=Prunu... [more]
H3GB69_PHYRM1.410e-5337.09Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4Y1REE4_PRUDU3.610e-5342.91Transposable element protein n=1 Tax=Prunus dulcis... [more]
A0A392LXU4_9FABA5.260e-5339.78Copia-type polyprotein n=1 Tax=Trifolium medium Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig105contigS-ischiensis_contig105:257723..259328 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score116.3
Seed ortholog evalue1.1e-23
Seed eggNOG ortholog400682.PAC_15698969
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3A8FB@33154,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Exons2
Model size1562
Cds size423
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig105.1853.1prot_S-ischiensis_contig105.1853.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig105 258741..259163 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.1303778-UTR-S-ischiensis_contig105:257722..2581511622815566.1303778-UTR-S-ischiensis_contig105:257722..258151Schizocladia ischiensis KU_0333UTRS-ischiensis_contig105 257723..258151 +
1695739774.0751312-UTR-S-ischiensis_contig105:257722..2581511695739774.0751312-UTR-S-ischiensis_contig105:257722..258151Schizocladia ischiensis KU_0333UTRS-ischiensis_contig105 257723..258151 +
1622815566.1451154-UTR-S-ischiensis_contig105:258195..2587401622815566.1451154-UTR-S-ischiensis_contig105:258195..258740Schizocladia ischiensis KU_0333UTRS-ischiensis_contig105 258196..258740 +
1695739774.085404-UTR-S-ischiensis_contig105:258195..2587401695739774.085404-UTR-S-ischiensis_contig105:258195..258740Schizocladia ischiensis KU_0333UTRS-ischiensis_contig105 258196..258740 +
1622815566.1800091-UTR-S-ischiensis_contig105:259163..2593281622815566.1800091-UTR-S-ischiensis_contig105:259163..259328Schizocladia ischiensis KU_0333UTRS-ischiensis_contig105 259164..259328 +
1695739774.116488-UTR-S-ischiensis_contig105:259163..2593281695739774.116488-UTR-S-ischiensis_contig105:259163..259328Schizocladia ischiensis KU_0333UTRS-ischiensis_contig105 259164..259328 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.157793-CDS-S-ischiensis_contig105:258740..2591631622815566.157793-CDS-S-ischiensis_contig105:258740..259163Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 258741..259163 +
1695739774.0993526-CDS-S-ischiensis_contig105:258740..2591631695739774.0993526-CDS-S-ischiensis_contig105:258740..259163Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 258741..259163 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig105.1853.1

>prot_S-ischiensis_contig105.1853.1 ID=prot_S-ischiensis_contig105.1853.1|Name=mRNA_S-ischiensis_contig105.1853.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=141bp
MQLSRVVSKPYAMHMAAAKRLLRYLKGTTTLGIKYLCNTRPSTTPVLEGY
CDANYGGDLATRKSCTGYTYFLAQGPITWYSKLQPLVAQSSTESEYISLA
HVGNEATYLRDLLSSLGAEQQGPTVIYEDNRSAIHLVRSK*
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mRNA from alignment at S-ischiensis_contig105:257723..259328+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig105.1853.1 ID=mRNA_S-ischiensis_contig105.1853.1|Name=mRNA_S-ischiensis_contig105.1853.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1606bp|location=Sequence derived from alignment at S-ischiensis_contig105:257723..259328+ (Schizocladia ischiensis KU_0333)
GCTGACCCACCTTCTTACAAGGCAGCTCAGAAGTCTCCTGTATGGCTTAA ATGGAAACAAGCGGCAAAAGAGGAATATGATTCCCTTGTTAAAAACAAGG TTTGGTCTCTAGTCAAACCCCCTCCTGGTGCCAATATATGTGGCAGTAGA TGGGTGTTTAAGACCGAATACAAGGCTGATGGCTCCGTAGGAAGGTATAA AGCACGTTTTGTGGCCCAAGGCTTTAGTCAACTCCCCGGAGTTGACTATG TAGACACCTATGCTCCTGTCTGCAGGTTCTCCTCAGTGAGAACTATCCTA GCTCTAGCAGGCTACCACAACTGGCCTGTAAGGCAGGTGGATATCAAAAC AGCCTTCTTACAGAGTATCCTCAAGGATGTGACTATCTATGTCAAACAAT GTGCCTTCTTACAGAGTATCCTCAAGGATGTGACTATATCAAACAACGTG AGGGTTTTGAGCACACTGGCAAGAATGGCTCCCATCTTGTCTGTCAGCTC AAAAGAAGCCTCTATGGCCTGAAGCAGTCTCCTAGACTGTGGCAGGCCAC TTTGCATGCCTTCCTCCTTGATGCAGGGTTGGTTCCAAGTGAAATCGACC CCTGCGTGTACATCAAGAGGGGGAAAAAATCGGGCCTGCCTGATTTATTG ATGTCCATCTACGTGGACGATCTACTTGTCACGGGGGCTAATCAAATTCT GTGGAAACACTTCTCAAATCTATGTCATCCAGGTTTGACAAGACCTTGGC ACAGCTGCCTGCCTGCTAGGCATGGAGATACAAACATAATCGTGACTTGC GCACGCTCCACCTTCGCCAAAAGAAGTACGCTGATGACATACTCCACAGA TTTGGTAGGGACTCTTGTAACTCTGTGCCAACCCCAGGGGATTTTGATAA CTTCCACCCTGTTGGGCAGACACTGCTTGAGTCCACTGACCACAGCATAT ACCGAGAAATTATTGGGTCTCTGCTATATCTGTGCCAGCTCACAAGGCCT GACATTTCATATGCAGTGATGCAACTTTCTCGTGTGGTCTCTAAACCGTA TGCCATGCACATGGCTGCAGCCAAACGCCTACTTAGGTACTTAAAGGGCA CTACCACACTTGGTATTAAGTACCTTTGCAATACCAGACCTTCCACAACT CCGGTTCTGGAAGGCTACTGTGATGCCAATTATGGGGGTGACCTTGCCAC TCGAAAGAGCTGTACAGGCTACACATATTTCCTAGCCCAAGGTCCCATAA CTTGGTACTCCAAGCTGCAGCCATTAGTCGCACAAAGCTCAACAGAGAGC GAGTACATTTCGTTAGCCCACGTGGGCAATGAGGCTACCTACTTACGCGA CTTGCTCTCTTCTCTAGGAGCTGAGCAACAAGGTCCGACTGTTATCTACG AAGATAACCGAAGCGCTATCCACCTCGTGCGCAGCAAATGATGGAGCAGC CACACGAAGCACATTGCGATTCGTTACCATCGCATTCGTCAACTCATCAC TGACAATATCGTCGACCTTGAGCACATCGGGACACTCTCCCAACGTGCCG ACTGCCTCACCAAGCAGTTAAAGGGCCAGCACTTCCGCGACATCCGGGAA CTGCTG
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Coding sequence (CDS) from alignment at S-ischiensis_contig105:257723..259328+

>mRNA_S-ischiensis_contig105.1853.1 ID=mRNA_S-ischiensis_contig105.1853.1|Name=mRNA_S-ischiensis_contig105.1853.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=846bp|location=Sequence derived from alignment at S-ischiensis_contig105:257723..259328+ (Schizocladia ischiensis KU_0333)
ATGCAACTTTCTCGTGTGGTCTCTAAACCGTATGCCATGCACATGGCTGC
AGCCAAACGCCTACTTAGGTACTTAAAGGGCACTACCACACTTGGTATTA
AGTACCTTTGCAATACCAGACCTTCCACAACTCCGGTTCTGGAAGGCTAC
TGTGATGCCAATTATGGGGGTGACCTTGCCACTCGAAAGAGCTGTACAGG
CTACACATATTTCCTAGCCCAAGGTCCCATAACTTGGTACTCCAAGCTGC
AGCCATTAGTCGCACAAAGCTCAACAGAGAGCGAGTACATTTCGTTAGCC
CACGTGGGCAATGAGGCTACCTACTTACGCGACTTGCTCTCTTCTCTAGG
AGCTGAGCAACAAGGTCCGACTGTTATCTACGAAGATAACCGAAGCGCTA
TCCACCTCGTGCGCAGCAAATGAATGCAACTTTCTCGTGTGGTCTCTAAA
CCGTATGCCATGCACATGGCTGCAGCCAAACGCCTACTTAGGTACTTAAA
GGGCACTACCACACTTGGTATTAAGTACCTTTGCAATACCAGACCTTCCA
CAACTCCGGTTCTGGAAGGCTACTGTGATGCCAATTATGGGGGTGACCTT
GCCACTCGAAAGAGCTGTACAGGCTACACATATTTCCTAGCCCAAGGTCC
CATAACTTGGTACTCCAAGCTGCAGCCATTAGTCGCACAAAGCTCAACAG
AGAGCGAGTACATTTCGTTAGCCCACGTGGGCAATGAGGCTACCTACTTA
CGCGACTTGCTCTCTTCTCTAGGAGCTGAGCAACAAGGTCCGACTGTTAT
CTACGAAGATAACCGAAGCGCTATCCACCTCGTGCGCAGCAAATGA
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