mRNA_S-ischiensis_contig105.1853.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig105.1853.1 vs. uniprot
Match: A0A151SR20_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SR20_CAJCA) HSP 1 Score: 199 bits (506), Expect = 3.750e-56 Identity = 114/268 (42.54%), Postives = 161/268 (60.07%), Query Frame = 3
Query: 774 QKKYADDILHRFGRDSCNSVPTPGDFDNFHPVGQTLL-----ESTDHSIYREIIGSLLYLCQLTRPDISYAVMQLSRVVSKPYAMHMAAAKRLLRYLKGTTTLGIKYLCNTRPSTTPVLEGYCDANYGGDLATRKSCTGYTYFLAQGPITWYSKLQPLVAQSSTESEYISLAHVGNEATYLRDLLSSLGAEQQGPTVIYEDNRSAIHLVRSK*WSSHTKHIAIRYHRIRQLITDNIVDLEHIGTLSQRADCLTKQLKGQHFRDIRELL 1562
QKKYA +IL RF ++CN V TP + G L E D + ++ I+GSL+YL TRPDI YAV +SR + +P +H+ AAKR+ RYLKGTT LG+ Y + +L G+ D+NY GD+ R+S +G+ + + G I+W SK Q +V S+TE+E+I+ A +A +LR +L L QQGPTVI+ DN S I L R+ +KHI +RYH +R L+ + I+DL + + Q AD LTK LK + F +R LL
Sbjct: 40 QKKYAHEILERFNMENCNPVGTPTE------PGLKLSKDLDGERVDSTYFKRIVGSLMYLTT-TRPDIMYAVCLISRYMERPTELHLKAAKRVFRYLKGTTDLGVFY----KKINGSILTGFTDSNYAGDMDDRRSTSGHVFMIGSGAISWASKKQQVVTLSTTEAEFIAAATSACQAIWLRRILEELHFYQQGPTVIHCDNSSTIKLSRNPILHGRSKHIDVRYHFLRDLVIEKIIDLVYCRSEDQVADILTKPLKLEAFEKLRGLL 296
BLAST of mRNA_S-ischiensis_contig105.1853.1 vs. uniprot
Match: A0A7D9I9A7_PARCT (Uncharacterized protein n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9I9A7_PARCT) HSP 1 Score: 196 bits (498), Expect = 2.700e-55 Identity = 107/275 (38.91%), Postives = 159/275 (57.82%), Query Frame = 3
Query: 738 KHNRDLRTLHLRQKKYADDILHRFGRDSCNSVPTPGDFDNFHPVGQTLLESTDHSIYREIIGSLLYLCQLTRPDISYAVMQLSRVVSKPYAMHMAAAKRLLRYLKGTTTLGIKYLCNTRPSTTPVLEGYCDANYGGDLATRKSCTGYTYFLAQGPITWYSKLQPLVAQSSTESEYISLAHVGNEATYLRDLLSSLGAEQQGPTVIYEDNRSAIHLVRSK*WSSHTKHIAIRYHRIRQLITDNIVDLEHIGTLSQRADCLTKQLKGQHFRDIRELL 1562
K +R +TL + Q+KY + +++RFG CN V TP + E + Y++ IG L Y+ TRPDI+ AV LS+ +S P H KRLLRY+KGT T G+K++ N L GY DAN+ GD+ TR+S +GY + +A I+W SK Q VA+S+TE+E+++L+ A +LR LLS LG GPT+I EDN+ AI + ++ + + TKHI I ++ IR+ I + +E+ T AD +TK L + F +R L+
Sbjct: 4 KRDRAKKTLFISQEKYLEGVINRFGMQDCNPVSTPLETGKTFQKRADDEEPCNKETYQQAIGCLTYVSTSTRPDIAAAVGLLSQYMSNPSKDHWLGIKRLLRYIKGTLTYGLKFVANKNECD---LHGYADANWAGDVDTRRSISGYIFKVADATISWSSKKQSTVAKSTTEAEFVALSQACQGAVWLRRLLSGLGCNTDGPTLIKEDNQGAIEIAKNPKFHNRTKHIDITFYFIRERIESREIKVEYCSTHDMLADIMTKALPRERFEKLRSLM 275
BLAST of mRNA_S-ischiensis_contig105.1853.1 vs. uniprot
Match: A0A5N5FQC6_9ROSA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5FQC6_9ROSA) HSP 1 Score: 196 bits (499), Expect = 3.980e-55 Identity = 112/269 (41.64%), Postives = 156/269 (57.99%), Query Frame = 3
Query: 774 QKKYADDILHRFGRDSCNSVPTPGDFDNFHPVGQTLL------ESTDHSIYREIIGSLLYLCQLTRPDISYAVMQLSRVVSKPYAMHMAAAKRLLRYLKGTTTLGIKYLCNTRPSTTPVLEGYCDANYGGDLATRKSCTGYTYFLAQGPITWYSKLQPLVAQSSTESEYISLAHVGNEATYLRDLLSSLGAEQQGPTVIYEDNRSAIHLVRSK*WSSHTKHIAIRYHRIRQLITDNIVDLEHIGTLSQRADCLTKQLKGQHFRDIRELL 1562
QK+YA ++L RF ++CN V P V T L E D + Y++I+GSL+YL TRPD + V +SR + P MH+AAAKR+LRYLKGT +LGI Y + L GY D++Y GDL RKS +GY + L+ G + W SK QP+V S+TE+E+I+ A AT+LR ++ LG QQ T ++ DN S I L ++ +KHI +R+H +R++ + IV L H T Q AD LTK LK F +R L+
Sbjct: 40 QKRYAQEVLERFKMENCNPVHNP-------IVPGTKLTKDVTGEKVDSTFYKQIVGSLMYLTA-TRPDTMFVVSLISRFMESPTEMHLAAAKRVLRYLKGTISLGILY----KKGGCTELRGYSDSDYAGDLDDRKSTSGYLFMLSSGAVCWSSKKQPVVTLSTTEAEFIAAASCACHATWLRRIMKELGQAQQDSTTVFCDNSSTIKLSKNPVMHGRSKHIDVRFHFLREMTKNKIVQLVHCNTQEQVADILTKPLKTDAFLKMRGLM 296
BLAST of mRNA_S-ischiensis_contig105.1853.1 vs. uniprot
Match: A0A5N5I7K4_9ROSA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5I7K4_9ROSA) HSP 1 Score: 196 bits (497), Expect = 7.380e-55 Identity = 109/267 (40.82%), Postives = 157/267 (58.80%), Query Frame = 3
Query: 762 LHLRQKKYADDILHRFGRDSCNSVPTPGDFDNFHPVGQTLLESTDHSIYREIIGSLLYLCQLTRPDISYAVMQLSRVVSKPYAMHMAAAKRLLRYLKGTTTLGIKYLCNTRPSTTPVLEGYCDANYGGDLATRKSCTGYTYFLAQGPITWYSKLQPLVAQSSTESEYISLAHVGNEATYLRDLLSSLGAEQQGPTVIYEDNRSAIHLVRSK*WSSHTKHIAIRYHRIRQLITDNIVDLEHIGTLSQRADCLTKQLKGQHFRDIRELL 1562
+ + Q+KYA +IL RF CNSV P F D ++Y++++GSL+YL TRPD+ + V +SR + +P +HM AKR+LRY+KGTT LGI Y + T L GY D++Y GD RKS +GY + + G ++W SK QP+V S+TE+E+I+ A + +LR +L SL EQ+ P V+Y DN S I L R+ +KHI +R+H +R L+ D +++L H +L Q AD TK LK F +R LL
Sbjct: 36 IFISQRKYAQEILERFNMHQCNSVLNPI-VPGFKLTKDEGGIKVDGTVYKQMVGSLMYLTA-TRPDLMFVVSLISRYMERPTEVHMQTAKRVLRYVKGTTDLGIFY----KKGGTEELIGYTDSDYAGDQDDRKSTSGYVFMVNMGAVSWSSKKQPVVTLSTTEAEFIAAASSACQVVWLRRILESLNHEQRSPIVVYCDNISTIKLSRNPVLHGRSKHIDVRFHFLRNLVKDEVLELVHCSSLEQVADIFTKPLKVDLFLKLRGLL 296
BLAST of mRNA_S-ischiensis_contig105.1853.1 vs. uniprot
Match: A0A2P6R5Z2_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6R5Z2_ROSCH) HSP 1 Score: 196 bits (498), Expect = 1.190e-54 Identity = 110/271 (40.59%), Postives = 160/271 (59.04%), Query Frame = 3
Query: 762 LHLRQKKYADDILHRFGRDSCNSVPTPGDFDNFHPVGQTLLEST----DHSIYREIIGSLLYLCQLTRPDISYAVMQLSRVVSKPYAMHMAAAKRLLRYLKGTTTLGIKYLCNTRPSTTPVLEGYCDANYGGDLATRKSCTGYTYFLAQGPITWYSKLQPLVAQSSTESEYISLAHVGNEATYLRDLLSSLGAEQQGPTVIYEDNRSAIHLVRSK*WSSHTKHIAIRYHRIRQLITDNIVDLEHIGTLSQRADCLTKQLKGQHFRDIRELL 1562
+ + Q+KYA ++L RF CNSV TP D P + +S D +++++I+GSL+YL TRPDI YAV +SR + P +H+ AAKR+ RYLKGT G+ Y T + L G+ D++Y GD+ RKS +G + L G ++W SK QP+V S+TE+E+++ +A +LR LL LG QQGPT IY DN SAI L ++ +KHI +RYH +R L D ++++ + + Q AD +TK LK F +R LL
Sbjct: 36 IFVTQRKYAQEVLERFQMKDCNSVTTPTD-----PTIKLKKDSEGKKIDATLFKQIVGSLMYLTT-TRPDIMYAVSLISRYMESPTELHLFAAKRIFRYLKGTIDFGMWYKRETEAGMSVGLYGFTDSDYAGDVDDRKSTSGNVFLLGSGVVSWGSKKQPIVTLSTTEAEFVAATSGACQAIWLRKLLGVLGNNQQGPTDIYCDNVSAIKLSKNPVLHGRSKHIDVRYHFLRDLCKDGVINVIYCKSEDQIADIMTKPLKTAVFEKLRSLL 300
BLAST of mRNA_S-ischiensis_contig105.1853.1 vs. uniprot
Match: A0A0S7JP25_9TELE (POLX n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7JP25_9TELE) HSP 1 Score: 196 bits (499), Expect = 2.290e-54 Identity = 126/334 (37.72%), Postives = 181/334 (54.19%), Query Frame = 3
Query: 558 LRVHQEGEKIGPA*FID-VHLRGRSTCHGG*SNSVETLLKSMSSRFD-KTLAQLPAC*AWRYKHNRDLRTLHLRQKKYADDILHRFGRDSCNSVPTPGDFDNFHPVGQTLLESTDHSIYREIIGSLLYLCQLTRPDISYAVMQLSRVVSKPYAMHMAAAKRLLRYLKGTTTLGIKYLCNTRPSTTPVLEGYCDANYGGDLATRKSCTGYTYFLAQGPITWYSKLQPLVAQSSTESEYISLAHVGNEATYLRDLLSSLGAEQQGPTVIYEDNRSAIHLVRSK*WSSHTKHIAIRYHRIRQLITDNIVDLEHIGTLSQRADCLTKQLKGQHFRDIR 1553
+R+ QE E I A ++D + L ST S++ L ++ R+ K L +L +++ + L QK+Y + IL ++G D N V TP D + D S Y+ ++GSLLY TRPDI+ AV +S+ + P H+ A KR+LRYLKGT L +K+ C L G+ DA++ GDL R S TG + L+ G ++W SK Q VA S+ E+EY++L+ E T+LR LL+ LG + PTVI EDN+ AI + ++ S TKHI IRYH IR+ + D V LE+ T +AD LTK L Q F + R
Sbjct: 41 VRLSQELEII--AVYVDDLMLITEST------ESMDELKLTLQERYKMKDLGELSYILGISVIQDKEKNCICLHQKQYIETILKKYGMDKANPVATPADISVKLKKDDGVSNPVDPSTYQSMVGSLLYAAMTTRPDIAQAVSAVSKFNANPNTAHLTAVKRILRYLKGTVNLALKFDCAGNKD----LIGFSDADWAGDLDDRHSTTGNIFLLSGGAVSWLSKKQATVALSTAEAEYVALSQAAQEGTWLRRLLNDLGMVTK-PTVILEDNQGAIAIAKNPVDHSRTKHIDIRYHYIRECVQDGEVKLEYCPTDKMKADILTKPLARQKFENFR 361
BLAST of mRNA_S-ischiensis_contig105.1853.1 vs. uniprot
Match: UPI0009AB427F (uncharacterized protein LOC109950541 n=1 Tax=Prunus persica TaxID=3760 RepID=UPI0009AB427F) HSP 1 Score: 194 bits (492), Expect = 8.470e-54 Identity = 114/268 (42.54%), Postives = 155/268 (57.84%), Query Frame = 3
Query: 774 QKKYADDILHRFGRDSCNSVPTPGDFDNFHPVGQTLLES-----TDHSIYREIIGSLLYLCQLTRPDISYAVMQLSRVVSKPYAMHMAAAKRLLRYLKGTTTLGIKYLCNTRPSTTPVLEGYCDANYGGDLATRKSCTGYTYFLAQGPITWYSKLQPLVAQSSTESEYISLAHVGNEATYLRDLLSSLGAEQQGPTVIYEDNRSAIHLVRSK*WSSHTKHIAIRYHRIRQLITDNIVDLEHIGTLSQRADCLTKQLKGQHFRDIRELL 1562
QKKYA DIL+RF D C TP ++ G L + D + Y++IIGSL+YL TRPDI YAV +SR + KP MH+ AAKR+LRY+KGT G+ Y + GY D++Y GD+ RKS +G+ + L G I+W SK Q +V SSTE+EY++ A +A +LR + LG Q+GPT IY DN S I L R+ +KHI +R+H +R L +D + LE+ + Q AD LTK LK F +R +L
Sbjct: 57 QKKYAQDILNRFQMDDCKPFGTPAEY------GLKLCKDKGGKEVDSTFYKQIIGSLMYLTY-TRPDIMYAVSLVSRYMEKPTEMHLNAAKRILRYVKGTIDYGVFY----KREDGSGFVGYTDSDYAGDIDDRKSTSGHIFLLNSGAISWSSKKQQIVTLSSTEAEYVAAAASSCQAMWLRKIFEVLGNVQKGPTTIYCDNISTIKLSRNPVMHGRSKHIDVRFHFLRDLCSDEKIVLEYCKSGEQVADILTKPLKQPAFEKLRSML 313
BLAST of mRNA_S-ischiensis_contig105.1853.1 vs. uniprot
Match: H3GB69_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB69_PHYRM) HSP 1 Score: 192 bits (489), Expect = 1.410e-53 Identity = 112/302 (37.09%), Postives = 168/302 (55.63%), Query Frame = 3
Query: 657 VETLLKSMSSRFD-KTLAQLPAC*AWRYKHNRDLRTLHLRQKKYADDILHRFGRDSCNSVPTPGDFDNFHPVGQTLLESTDHSI-----YREIIGSLLYLCQLTRPDISYAVMQLSRVVSKPYAMHMAAAKRLLRYLKGTTTLGIKYLCNTRPSTTPVLEGYCDANYGGDLATRKSCTGYTYFLAQGPITWYSKLQPLVAQSSTESEYISLAHVGNEATYLRDLLSSLGAEQQGPTVIYEDNRSAIHLVRSK*WSSHTKHIAIRYHRIRQLITDNIVDLEHIGTLSQRADCLTKQLKGQHFR 1544
+ + K++ F K L +L C NRD +T+ + Q+ Y + +FG + C +V TP D ++ + + S D YRE++G+L+YL TRPDI+ AV ++++ + H AAKR+L+YLK T LG+ + T+ L GY DAN+ GDL TR+S TGY +FL I+W SK QP VA SSTE+EY++L + EA +LR LL +G E G T ++DN+ I L ++ + S TKHI ++YH +R+ + D ++ LE+ T AD TK L R
Sbjct: 10 IGEIKKALKREFSIKELGELKYCLGIEIHRNRDDKTIVMNQRAYIQRLAEKFGVEKCKAVHTPADSNS-----KLVKPSEDEDFVPRYPYRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDLGLVFNGGTKGE----LIGYADANWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVGATTFFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLEYKPTDEMIADGFTKALARPKHR 302
BLAST of mRNA_S-ischiensis_contig105.1853.1 vs. uniprot
Match: A0A4Y1REE4_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1REE4_PRUDU) HSP 1 Score: 195 bits (496), Expect = 3.610e-53 Identity = 115/268 (42.91%), Postives = 164/268 (61.19%), Query Frame = 3
Query: 774 QKKYADDILHRFGRDSCNSVPTP---GDFDNFHPVGQTLLESTDHSIYREIIGSLLYLCQLTRPDISYAVMQLSRVVSKPYAMHMAAAKRLLRYLKGTTTLGIKYLCNT--RPSTTPVLEGYCDANYGGDLATRKSCTGYTYFLAQGPITWYSKLQPLVAQSSTESEYISLAHVGNEATYLRDLLSSLGAEQQGPTVIYEDNRSAIHLVRSK*WSSHTKHIAIRYHRIRQLITDNIVDLEHIGTLSQRADCLTKQLKGQHFRDIRELL 1562
QKKYA++IL RF + CNSV P G N VG ++ST +++I+GSL+YL TRPD+ +AV +SR + P +H AKR+LRYLKGTT LG+ Y T + L G+ D++Y GDL RKS +GY + L+ ++W SK QP+V S+TE+E+I+ +A +LR LL L +Q PTVI+ DN SAI L R+ +KHI +R+H +R L+ + +++LEH + Q AD LTK LK + F +R+LL
Sbjct: 132 QKKYAEEILKRFHMEDCNSVQNPIVPGTKLN-KDVGGREVDSTH---FKQIVGSLMYLTA-TRPDLMFAVSLISRYMESPTELHYQTAKRVLRYLKGTTDLGLFYKKETINKKEAGDELMGFSDSDYAGDLDDRKSTSGYVFMLSSAAVSWSSKKQPVVTLSTTEAEFIAATSSACQAVWLRRLLEELCFKQDKPTVIFCDNSSAIKLSRNPVMHGRSKHIDVRFHFLRDLVKNEVIELEHCPSNMQVADILTKPLKLEAFVKMRKLL 394
BLAST of mRNA_S-ischiensis_contig105.1853.1 vs. uniprot
Match: A0A392LXU4_9FABA (Copia-type polyprotein n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392LXU4_9FABA) HSP 1 Score: 191 bits (485), Expect = 5.260e-53 Identity = 107/269 (39.78%), Postives = 160/269 (59.48%), Query Frame = 3
Query: 762 LHLRQKKYADDILHRFGRDSCNSVPTPGDFDNFHPVGQTLLEST----DHSIYREIIGSLLYLCQLTRPDISYAVMQLSRVVSKPYAMHMAAAKRLLRYLKGTTTLGIKYLCNTRPSTTPVLEGYCDANYGGDLATRKSCTGYTYFLAQGPITWYSKLQPLVAQSSTESEYISLAHVGNEATYLRDLLSSLGAEQQGPTVIYEDNRSAIHLVRSK*WSSHTKHIAIRYHRIRQLITDNIVDLEHIGTLSQRADCLTKQLKGQHFRDIRE 1556
+ + Q+KY +IL RFG CN V +P P + + + T D ++Y+++IG L+YL TRPD++YAV +R + +P MH+A KR+LRYLKGT TLG+ Y C R VL+G+ D++Y GD RKS +GY + L + I W SK QP+V S+TE+E++S A + +L+++LS L EQ G I DN S+I L ++ KHI +RYH +R L D +++L++ + Q AD +TK LK + F +RE
Sbjct: 16 IFIHQQKYGTEILQRFGMQDCNKVCSP-----IVPGCKLVKDETALACDATLYKQMIGCLMYLLA-TRPDMTYAVCLAARYMERPTEMHVAVVKRILRYLKGTLTLGVLYKC--RNGNDFVLQGWSDSDYAGDYDDRKSTSGYIFTLGESAICWSSKKQPIVTLSTTEAEFVSAASCACQCLWLKNILSHLLVEQAGCVCINCDNSSSIKLSKNPIMHGRCKHIDVRYHFLRDLSRDGVIELKYCKSQDQLADIMTKPLKLESFCRLRE 276 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig105.1853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig105.1853.1 >prot_S-ischiensis_contig105.1853.1 ID=prot_S-ischiensis_contig105.1853.1|Name=mRNA_S-ischiensis_contig105.1853.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=141bp MQLSRVVSKPYAMHMAAAKRLLRYLKGTTTLGIKYLCNTRPSTTPVLEGYback to top mRNA from alignment at S-ischiensis_contig105:257723..259328+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig105.1853.1 ID=mRNA_S-ischiensis_contig105.1853.1|Name=mRNA_S-ischiensis_contig105.1853.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1606bp|location=Sequence derived from alignment at S-ischiensis_contig105:257723..259328+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig105:257723..259328+ >mRNA_S-ischiensis_contig105.1853.1 ID=mRNA_S-ischiensis_contig105.1853.1|Name=mRNA_S-ischiensis_contig105.1853.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=846bp|location=Sequence derived from alignment at S-ischiensis_contig105:257723..259328+ (Schizocladia ischiensis KU_0333)back to top |