mRNA_S-ischiensis_contig105.1852.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig105.1852.1
Unique NamemRNA_S-ischiensis_contig105.1852.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig105.1852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig105contigS-ischiensis_contig105:237910..239089 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size467
Cds size234
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig105.1852.1prot_S-ischiensis_contig105.1852.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig105 238142..239089 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815563.393266-UTR-S-ischiensis_contig105:237909..2381411622815563.393266-UTR-S-ischiensis_contig105:237909..238141Schizocladia ischiensis KU_0333UTRS-ischiensis_contig105 237910..238141 -
1695739772.4992852-UTR-S-ischiensis_contig105:237909..2381411695739772.4992852-UTR-S-ischiensis_contig105:237909..238141Schizocladia ischiensis KU_0333UTRS-ischiensis_contig105 237910..238141 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815563.4075384-CDS-S-ischiensis_contig105:238141..2382641622815563.4075384-CDS-S-ischiensis_contig105:238141..238264Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 238142..238264 -
1695739772.5090456-CDS-S-ischiensis_contig105:238141..2382641695739772.5090456-CDS-S-ischiensis_contig105:238141..238264Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 238142..238264 -
1622815563.4173007-CDS-S-ischiensis_contig105:238978..2390891622815563.4173007-CDS-S-ischiensis_contig105:238978..239089Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 238979..239089 -
1695739772.5187023-CDS-S-ischiensis_contig105:238978..2390891695739772.5187023-CDS-S-ischiensis_contig105:238978..239089Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 238979..239089 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig105.1852.1

>prot_S-ischiensis_contig105.1852.1 ID=prot_S-ischiensis_contig105.1852.1|Name=mRNA_S-ischiensis_contig105.1852.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=78bp
HHFAGGCSGGCGDGSSFTHQRVDWRHHLNQHGRTPRNAAVHPGRDLSMGR
AGMGLSDTAASLEAMDRGHVEHKPERS*
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mRNA from alignment at S-ischiensis_contig105:237910..239089-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig105.1852.1 ID=mRNA_S-ischiensis_contig105.1852.1|Name=mRNA_S-ischiensis_contig105.1852.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1180bp|location=Sequence derived from alignment at S-ischiensis_contig105:237910..239089- (Schizocladia ischiensis KU_0333)
CATCATTTTGCTGGCGGCTGCAGCGGTGGCTGTGGCGATGGGTCATCCTT
CACCCACCAGCGCGTGGATTGGCGACATCACCTCAATCAACATGGCCGTA
CCCCACGAAATGTGAGTCGAAAGTGCATGCACGTACAGCCACTATGCTTT
GCTGTCTTATCGTGATTTGCTCGCAATCGACGACGACTGAATGGGTGACG
ATTGGCTACCCTACAGTATAGTACAGTAAGAATGGAGTCCCTCCTAGGCA
ATGCTGTAGCATTCATTTGGGTTCAATACGTTGTGGTAACCCGCCGCAAC
CTATACACCCCGCTTGTCAACTGGGGGGCCTTCACCGGCCGGTATAGGGG
CCTTGATTTGTCGTGTTTCATAATCAATTCCTCGACCTGTTCCCCTAGAG
CTACAATACAGCATGGGAAAATCCGTCAGAGGGTAAGCCTGGGCCGGCAC
ACTGTCGGCTATATGGTCACCCGGTCACCTATGCCTTCAGGGTGGCCACA
GTGCCCAACGTCTGATATTCCTCATTGGAGACTAGGTAGTCAAAACACGC
TTTGACATACTGACATGCACGCCGTGCAGTAACGTTTCTGTCCCTTCTCC
TTTAGCTCTGTTTTGAGAGCTTCCATTGGCAGGGTACATGTTGAAGTGCT
CTCCACCAGTTGTGGTAGCCTGAGTCCCTGGCCGCCAGAACCAGGGCGTT
CCATCACTGGCAGTCACGGTGGGATGAACAAACCAAGGCGGTGACATCCT
ATGCCAGCGGGGAAGTGACTGTTTTTCTCGTACTCACAACTCCTACATAT
GCTGCTGCTCTTGCATTCCGGACAGGCTGCTGTACATCCAGGGCGAGATC
TCAGCATGGGCCGAGCAGGCATGGGCCTGAGTGACACGGCTGCATCACTG
GAAGCCATGGATCGAGGCCATGTCGAGCACAAGCCTGAACGCTCATGATG
GGGTCGGTCAAATGACATTCAATTTGGACAGGGCCGGCCCGTAAAAGTTG
CAATTGTTGTACCCGTACAAGTATATTGTCAAGCACCCGGAGGTTCATGC
TGCTGCAGCCGCATGTGCCGTGCCCCTCCAGGGCCGCGCGATGAAGCTAC
AGTTACAGTACTAGCAGCTATCCTGAGGCATTTTATCCACCCCATAAATG
GCCGAAGAACACCTGATTCCACCGATCCGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig105:237910..239089-

>mRNA_S-ischiensis_contig105.1852.1 ID=mRNA_S-ischiensis_contig105.1852.1|Name=mRNA_S-ischiensis_contig105.1852.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=468bp|location=Sequence derived from alignment at S-ischiensis_contig105:237910..239089- (Schizocladia ischiensis KU_0333)
CATCATTTTGCTGGCGGCTGCAGCGGTGGCTGTGGCGATGGGTCATCCTT
CACCCACCAGCGCGTGGATTGGCGACATCACCTCAATCAACATGGCCGTA
CCCCACGAAATCATCATTTTGCTGGCGGCTGCAGCGGTGGCTGTGGCGAT
GGGTCATCCTTCACCCACCAGCGCGTGGATTGGCGACATCACCTCAATCA
ACATGGCCGTACCCCACGAAATGCTGCTGTACATCCAGGGCGAGATCTCA
GCATGGGCCGAGCAGGCATGGGCCTGAGTGACACGGCTGCATCACTGGAA
GCCATGGATCGAGGCCATGTCGAGCACAAGCCTGAACGCTCATGAGCTGC
TGTACATCCAGGGCGAGATCTCAGCATGGGCCGAGCAGGCATGGGCCTGA
GTGACACGGCTGCATCACTGGAAGCCATGGATCGAGGCCATGTCGAGCAC
AAGCCTGAACGCTCATGA
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