mRNA_S-ischiensis_contig105.1849.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig105.1849.1
Unique NamemRNA_S-ischiensis_contig105.1849.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig105.1849.1 vs. uniprot
Match: A0A6H5JA52_9PHAE (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JA52_9PHAE)

HSP 1 Score: 317 bits (813), Expect = 8.410e-105
Identity = 150/188 (79.79%), Postives = 164/188 (87.23%), Query Frame = 3 
Query:  120 RTPEEKGGQKIQLLGIGGRRTR--SSKAASTKKTPGEIRIQKDIAELDGGSVAEITFPNPNNLTTFHVKVTPDSGFWKGASYKFTFNVPDLYPHDPPKVLCGTKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRNDIQSFERVVKRTLQGAMVGGEAFERLV 677
            +  EEK   K+ +LGIGGRR +  S+KA  TKKTPGEIRIQKDIA+LDGGSVAEITFPNPNNLT+F VKV PDSGFWKGASY FTF +P LYPHDPPKVLC TKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYR++I  FER VKRTL G ++ GE F+RL+
Sbjct:   35 KADEEKAAGKLHVLGIGGRRAKRGSAKATGTKKTPGEIRIQKDIADLDGGSVAEITFPNPNNLTSFKVKVQPDSGFWKGASYHFTFTIPALYPHDPPKVLCETKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRDNISQFERTVKRTLAGCVMHGETFQRLI 222
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BLAST of mRNA_S-ischiensis_contig105.1849.1 vs. uniprot
Match: A0A835YZU8_9STRA (Ubiquitin-conjugating enzyme/RWD-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZU8_9STRA)

HSP 1 Score: 303 bits (777), Expect = 1.410e-99
Identity = 140/176 (79.55%), Postives = 154/176 (87.50%), Query Frame = 3 
Query:  150 IQLLGIGGRRTRSSKAASTKKTPGEIRIQKDIAELDGGSVAEITFPNPNNLTTFHVKVTPDSGFWKGASYKFTFNVPDLYPHDPPKVLCGTKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRNDIQSFERVVKRTLQGAMVGGEAFERLV 677
            ++LLGIGGRRT+ +  A  KKTPGEIRIQKDIAELDGG+VA ITFP+PNNL  F V VTPDSG+WKGASY FTF +P  YPHDPPKVLC TKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRN+I  F+R+V+RTLQG  + G+ F RLV
Sbjct:   32 VKLLGIGGRRTKKTGKAPPKKTPGEIRIQKDIAELDGGTVATITFPDPNNLCKFEVLVTPDSGYWKGASYNFTFTIPGHYPHDPPKVLCNTKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRNNIAEFQRIVRRTLQGCNMNGQVFPRLV 207
[Close]
BLAST of mRNA_S-ischiensis_contig105.1849.1 vs. uniprot
Match: A0A6V1TYK4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TYK4_HETAK)

HSP 1 Score: 296 bits (757), Expect = 3.420e-96
Identity = 140/189 (74.07%), Postives = 161/189 (85.19%), Query Frame = 3 
Query:  129 EEKGGQK-----IQLLGIGGRRTRSSKAASTKK-TPGEIRIQKDIAELDGGSVAEITFPNPNNLTTFHVKVTPDSGFWKGASYKFTFNVPDLYPHDPPKVLCGTKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRNDIQSFERVVKRTLQGAMVGGEAFERLV 677
            E KGG+      ++LLGIGG+++R+  A  TKK TPGE+RIQKDIAELDGG+VA ITFPNPNNLT+F V+VTPD+G W+GA+Y FTF +P +YPH+PPKV C TKIYHPNINLQG VCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLN EAAELYRND + FERVV+R+LQG  VG E FERL+
Sbjct:   43 ESKGGESKSSGGVKLLGIGGKKSRTGGAKKTKKRTPGELRIQKDIAELDGGNVAVITFPNPNNLTSFEVRVTPDTGMWRGATYHFTFAIPAMYPHEPPKVHCHTKIYHPNINLQGKVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNREAAELYRNDARQFERVVRRSLQGYSVGAEQFERLI 231
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BLAST of mRNA_S-ischiensis_contig105.1849.1 vs. uniprot
Match: A0A7S3M2N2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M2N2_9STRA)

HSP 1 Score: 286 bits (732), Expect = 1.420e-92
Identity = 135/184 (73.37%), Postives = 154/184 (83.70%), Query Frame = 3 
Query:  129 EEKGGQKIQLLGIGGRRTRS-SKAASTKKTPGEIRIQKDIAELDGGSVAEITFPNPNNLTTFHVKVTPDSGFWKGASYKFTFNVPDLYPHDPPKVLCGTKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRNDIQSFERVVKRTLQGAMVGGEAFERLV 677
            EE+G   + LLGIGG++ +S +K A  K+TPGEIRIQKDIAELDGGSVA++ FPNPN+LT F V V+PDSGFW GA Y FT  +P LYPH+PPKV C TKIYHPNINL+GNVCLNILRE+WKPVLDINAVIYG+IYLFYEPNP+DPLN EAA+LYR D   FERVVKRTLQG    GEAFERL+
Sbjct:   37 EEEGAGGLSLLGIGGKQIKSGAKKAGKKRTPGEIRIQKDIAELDGGSVAQVDFPNPNDLTNFTVTVSPDSGFWSGAKYVFTVAIPALYPHEPPKVTCRTKIYHPNINLEGNVCLNILREEWKPVLDINAVIYGMIYLFYEPNPDDPLNREAADLYRTDKNQFERVVKRTLQGYSHAGEAFERLI 220
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BLAST of mRNA_S-ischiensis_contig105.1849.1 vs. uniprot
Match: A0A448YW25_9STRA (UBC core domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YW25_9STRA)

HSP 1 Score: 286 bits (731), Expect = 1.870e-92
Identity = 133/188 (70.74%), Postives = 158/188 (84.04%), Query Frame = 3 
Query:  117 SRTPEEKGGQKIQLLGIGG-RRTRSSKAASTKKTPGEIRIQKDIAELDGGSVAEITFPNPNNLTTFHVKVTPDSGFWKGASYKFTFNVPDLYPHDPPKVLCGTKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRNDIQSFERVVKRTLQGAMVGGEAFERLV 677
            S + EE GGQ + L GIGG ++T+  ++++TKKTPGEIRIQKDI ELDGG VAE+TFP PN+LT+F+V +TPD+G+WKGA Y+F F VP  YPH PPKV C T IYHPNI+LQG VCLNILREDW+PVLDINAVIYGLIYLFYEPNP+DPLNHEAA+L+R DIQSFER+V RTL+G  + G  FERLV
Sbjct:   32 SESTEEGGGQ-VSLFGIGGQKKTKKGESSATKKTPGEIRIQKDIGELDGGKVAEVTFPKPNDLTSFNVSITPDTGYWKGARYEFEFKVPAHYPHSPPKVECKTSIYHPNIDLQGKVCLNILREDWRPVLDINAVIYGLIYLFYEPNPDDPLNHEAADLFRKDIQSFERLVNRTLRGGTLDGVTFERLV 218
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BLAST of mRNA_S-ischiensis_contig105.1849.1 vs. uniprot
Match: A0A7R9W2H1_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W2H1_9STRA)

HSP 1 Score: 286 bits (731), Expect = 8.020e-92
Identity = 130/181 (71.82%), Postives = 153/181 (84.53%), Query Frame = 3 
Query:  144 QKIQLLGIGGRRTRS---SKAASTKKTPGEIRIQKDIAELDGGSVAEITFPNPNNLTTFHVKVTPDSGFWKGASYKFTFNVPDLYPHDPPKVLCGTKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRNDIQSFERVVKRTLQGAMVGGEAFERLV 677
            +K+ +LGIGG++ +    + ++S K+TPGEIRIQKDIAELDGG VA I FPNPN+LTTFHV+VTPD+GFWKGASY FTF +PD YPH PPKV C TKIYHPNINL+G VCLNILREDWKPVLDINAVIYGLIYLFYEPNP+DPLNHEAAEL+R D+  F+R+V RTL G ++    F+RLV
Sbjct:   81 KKVSILGIGGKKKKDKGENSSSSKKRTPGEIRIQKDIAELDGGKVATIDFPNPNDLTTFHVRVTPDTGFWKGASYLFTFQIPDHYPHSPPKVHCETKIYHPNINLEGKVCLNILREDWKPVLDINAVIYGLIYLFYEPNPDDPLNHEAAELFRRDVNQFQRLVSRTLSGGILDNVQFQRLV 261
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BLAST of mRNA_S-ischiensis_contig105.1849.1 vs. uniprot
Match: A0A6T7JLN4_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7JLN4_9STRA)

HSP 1 Score: 281 bits (718), Expect = 1.980e-90
Identity = 128/181 (70.72%), Postives = 151/181 (83.43%), Query Frame = 3 
Query:  144 QKIQLLGIGGRRTRS---SKAASTKKTPGEIRIQKDIAELDGGSVAEITFPNPNNLTTFHVKVTPDSGFWKGASYKFTFNVPDLYPHDPPKVLCGTKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRNDIQSFERVVKRTLQGAMVGGEAFERLV 677
            +K+ LLGIGG++  S   + +   K+TPGEIRIQKDIAELDGG VA I FPNPN+LT FHV +TPD+GFWKGA Y FTF +P  YPH+PPKV CGT+IYHPNINL+G VCLNILREDWKPVLDINAVIYGLIYLFYEPNP+DPLNHEAA+L+R D+  F R+V+RTL+G ++ G  FERLV
Sbjct:   42 KKVSLLGIGGKKNASKGENGSGGKKRTPGEIRIQKDIAELDGGKVAIIDFPNPNDLTMFHVAITPDTGFWKGAKYDFTFQIPAHYPHNPPKVTCGTQIYHPNINLEGKVCLNILREDWKPVLDINAVIYGLIYLFYEPNPDDPLNHEAADLFRKDVNQFNRLVQRTLRGGILDGVPFERLV 222
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BLAST of mRNA_S-ischiensis_contig105.1849.1 vs. uniprot
Match: A0A7S3KW38_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KW38_9STRA)

HSP 1 Score: 280 bits (716), Expect = 3.020e-90
Identity = 128/186 (68.82%), Postives = 154/186 (82.80%), Query Frame = 3 
Query:  129 EEKGGQKIQLLGIGGRRTRSSKAAST---KKTPGEIRIQKDIAELDGGSVAEITFPNPNNLTTFHVKVTPDSGFWKGASYKFTFNVPDLYPHDPPKVLCGTKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRNDIQSFERVVKRTLQGAMVGGEAFERLV 677
            +E    K+ LLG+GG++ ++   + T   K+TPGEIRIQKDIAELDGG VA I FPNPN+LT F V+V PDSG+W+GA+Y F+FNVP  YPH+PPKV C TKIYHPNI+LQG VCLNILREDWKPVLDINAVIYGLIYLFYEPNP+DPLNHEAAEL+R D++ FER+V RTL+G ++ G  FE+LV
Sbjct:   29 DEGDSNKVSLLGVGGKKKKNENGSGTGGKKRTPGEIRIQKDIAELDGGKVATIEFPNPNDLTAFDVRVCPDSGYWQGATYHFSFNVPSHYPHEPPKVECHTKIYHPNIDLQGKVCLNILREDWKPVLDINAVIYGLIYLFYEPNPDDPLNHEAAELFRKDVRQFERLVNRTLRGGVLDGVQFEKLV 214
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BLAST of mRNA_S-ischiensis_contig105.1849.1 vs. uniprot
Match: B7G8G3_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G8G3_PHATC)

HSP 1 Score: 276 bits (706), Expect = 1.200e-88
Identity = 126/179 (70.39%), Postives = 153/179 (85.47%), Query Frame = 3 
Query:  147 KIQLLGIGGRR-TRSSKAASTKK-TPGEIRIQKDIAELDGGSVAEITFPNPNNLTTFHVKVTPDSGFWKGASYKFTFNVPDLYPHDPPKVLCGTKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRNDIQSFERVVKRTLQGAMVGGEAFERLV 677
            K+ LLG+GG++ T++ +  +TKK +PGEIRIQKDIAELDGG+VA I FPN N+LT+FHV ++PDSG+WKGA+Y FTF +P  YPH PPKV C TKIYHPNI+LQG VCLNILREDWKPVLDIN V+YGLIYLFYEPNP+DPLNHEAAEL+R D++ FER+V RTL+G ++ G  FERLV
Sbjct:   42 KVSLLGVGGKKQTKNGECKATKKRSPGEIRIQKDIAELDGGNVATIDFPNANDLTSFHVAISPDSGYWKGATYHFTFTIPPHYPHSPPKVECQTKIYHPNIDLQGKVCLNILREDWKPVLDINGVVYGLIYLFYEPNPDDPLNHEAAELFRKDVRQFERLVSRTLRGGILDGVQFERLV 220
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BLAST of mRNA_S-ischiensis_contig105.1849.1 vs. uniprot
Match: K0T069_THAOC (UBC core domain-containing protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T069_THAOC)

HSP 1 Score: 275 bits (704), Expect = 2.250e-88
Identity = 124/181 (68.51%), Postives = 151/181 (83.43%), Query Frame = 3 
Query:  147 KIQLLGIGGRRTRSSK----AASTKKTPGEIRIQKDIAELDGGSVAEITFPNPNNLTTFHVKVTPDSGFWKGASYKFTFNVPDLYPHDPPKVLCGTKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRNDIQSFERVVKRTLQGAMVGGEAFERLV 677
            K+ LLGIGG++ +++     +   K+TPGEIRIQKDIA+LDGG VA I FPNPNNLT F V +TPDSG+WK A+Y F F++PD YPH PPKV C TKIYHPNINL+G VCLNILREDWKPVLDINAVIYGLI+LFYEPNP+DPLNHEAA+L+R DI+ FER+V+RTL+G ++ G  F+RL+
Sbjct:   38 KVSLLGIGGKKKKANDGNGASGKKKRTPGEIRIQKDIADLDGGKVANIEFPNPNNLTAFEVSITPDSGYWKNATYNFKFDIPDHYPHTPPKVHCETKIYHPNINLEGKVCLNILREDWKPVLDINAVIYGLIFLFYEPNPDDPLNHEAADLFRRDIRQFERLVQRTLRGGVMDGVHFDRLI 218
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig105.1849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JA52_9PHAE8.410e-10579.79UBC core domain-containing protein n=2 Tax=Ectocar... [more]
A0A835YZU8_9STRA1.410e-9979.55Ubiquitin-conjugating enzyme/RWD-like protein n=1 ... [more]
A0A6V1TYK4_HETAK3.420e-9674.07Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3M2N2_9STRA1.420e-9273.37Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A448YW25_9STRA1.870e-9270.74UBC core domain-containing protein n=1 Tax=Pseudo-... [more]
A0A7R9W2H1_9STRA8.020e-9271.82Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A6T7JLN4_9STRA1.980e-9070.72Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S3KW38_9STRA3.020e-9068.82Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
B7G8G3_PHATC1.200e-8870.39Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
K0T069_THAOC2.250e-8868.51UBC core domain-containing protein n=2 Tax=Thalass... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig105contigS-ischiensis_contig105:226284..230782 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score318.5
Seed ortholog evalue2.4e-84
Seed eggNOG ortholog2880.D8LRS2
Preferred nameUBE2M
KEGG rclassRC00005,RC00726,RC00836,RC00837,RC01726
KEGG koko:K00053,ko:K00573,ko:K00698,ko:K10579
KEGG ReactionR02335,R03051,R04439,R04440,R05068,R05069,R05071
KEGG Pathwayko00290,ko00520,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,ko04120,map00290,map00520,map00770,map01100,map01110,map01130,map01210,map01230,map04120
KEGG ModuleM00019,M00570
GOsGO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0008589,GO:0009719,GO:0009725,GO:0009733,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010646,GO:0010648,GO:0010941,GO:0010942,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019788,GO:0023051,GO:0023057,GO:0031974,GO:0031981,GO:0032446,GO:0036211,GO:0042221,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043523,GO:0043525,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045116,GO:0045879,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0061650,GO:0061654,GO:0065007,GO:0070013,GO:0070647,GO:0071704,GO:0140096,GO:1901214,GO:1901216,GO:1901564
EggNOG free text desc.NEDD8 transferase activity
EggNOG OGsKOG0420@1,KOG0420@2759
EC1.1.1.86,2.1.1.77,2.4.1.16
COG Functional cat.O
CAZyGT2
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUbiquitin-conjugating enzyme E2
Ec32 orthologEc-08_002220.1
Exons5
Model size1201
Cds size654
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.0298514-UTR-S-ischiensis_contig105:226283..2263091622815566.0298514-UTR-S-ischiensis_contig105:226283..226309Schizocladia ischiensis KU_0333UTRS-ischiensis_contig105 226284..226309 +
1695739773.983329-UTR-S-ischiensis_contig105:226283..2263091695739773.983329-UTR-S-ischiensis_contig105:226283..226309Schizocladia ischiensis KU_0333UTRS-ischiensis_contig105 226284..226309 +
1622815566.1005435-UTR-S-ischiensis_contig105:230261..2307821622815566.1005435-UTR-S-ischiensis_contig105:230261..230782Schizocladia ischiensis KU_0333UTRS-ischiensis_contig105 230262..230782 +
1695739774.0664744-UTR-S-ischiensis_contig105:230261..2307821695739774.0664744-UTR-S-ischiensis_contig105:230261..230782Schizocladia ischiensis KU_0333UTRS-ischiensis_contig105 230262..230782 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.0397751-CDS-S-ischiensis_contig105:226309..2265231622815566.0397751-CDS-S-ischiensis_contig105:226309..226523Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 226310..226523 +
1695739773.9969568-CDS-S-ischiensis_contig105:226309..2265231695739773.9969568-CDS-S-ischiensis_contig105:226309..226523Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 226310..226523 +
1622815566.052997-CDS-S-ischiensis_contig105:227213..2272931622815566.052997-CDS-S-ischiensis_contig105:227213..227293Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 227214..227293 +
1695739774.0093868-CDS-S-ischiensis_contig105:227213..2272931695739774.0093868-CDS-S-ischiensis_contig105:227213..227293Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 227214..227293 +
1622815566.0646033-CDS-S-ischiensis_contig105:227484..2275711622815566.0646033-CDS-S-ischiensis_contig105:227484..227571Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 227485..227571 +
1695739774.028888-CDS-S-ischiensis_contig105:227484..2275711695739774.028888-CDS-S-ischiensis_contig105:227484..227571Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 227485..227571 +
1622815566.0744889-CDS-S-ischiensis_contig105:229166..2292531622815566.0744889-CDS-S-ischiensis_contig105:229166..229253Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 229167..229253 +
1695739774.0410266-CDS-S-ischiensis_contig105:229166..2292531695739774.0410266-CDS-S-ischiensis_contig105:229166..229253Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 229167..229253 +
1622815566.0900974-CDS-S-ischiensis_contig105:230075..2302611622815566.0900974-CDS-S-ischiensis_contig105:230075..230261Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 230076..230261 +
1695739774.0546577-CDS-S-ischiensis_contig105:230075..2302611695739774.0546577-CDS-S-ischiensis_contig105:230075..230261Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 230076..230261 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig105.1849.1prot_S-ischiensis_contig105.1849.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig105 226310..230261 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig105.1849.1

>prot_S-ischiensis_contig105.1849.1 ID=prot_S-ischiensis_contig105.1849.1|Name=mRNA_S-ischiensis_contig105.1849.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=218bp
MIRLKKKQEEEENSQNGEAASSAGASGSGSSRTPEEKGGQKIQLLGIGGR
RTRSSKAASTKKTPGEIRIQKDIAELDGGSVAEITFPNPNNLTTFHVKVT
PDSGFWKGASYKFTFNVPDLYPHDPPKVLCGTKIYHPNINLQGNVCLNIL
REDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRNDIQSFERVVK
RTLQGAMVGGEAFERLV*
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mRNA from alignment at S-ischiensis_contig105:226284..230782+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig105.1849.1 ID=mRNA_S-ischiensis_contig105.1849.1|Name=mRNA_S-ischiensis_contig105.1849.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4499bp|location=Sequence derived from alignment at S-ischiensis_contig105:226284..230782+ (Schizocladia ischiensis KU_0333)
CCCGACGCTGGGAGAATTCTTGCACGATGATCAGGCTCAAGAAGAAGCAG
GAAGAAGAGGAAAACAGCCAGAATGGGGAGGCAGCTTCCTCTGCAGGGGC
ATCGGGATCCGGGTCGTCCAGAACCCCAGAGGAAAAGGGCGGACAGAAGA
TTCAGTTGCTGGGCATTGGGGGGCGCAGGACAAGGAGCTCGAAAGCCGCT
TCCACGAAGAAGACGCCAGGGGAAATTCGCATTCAAAAGGGTTAGTTACG
GGCTTGCGATGCTTTCGAATGATTCGACGGGAGTGTGGTCTGGGTGCGGG
TGGATTAACTGCGGCGTATTCGGGAAGGAACGTGGAAATTCAAACACGTC
CGTATTTGAACCGGGCAGCACGCGTGGCACCCCCCCTTGTAGGACCACCA
GGGTACAGCCCTGTCCGGGAGGCCAAGTATATCTTTGGAGGGTTGTTTGG
GGTGTGCTTCCGTCTTGTTGTCCTATGCTCAGCCTGCATCGCCTGCAAGC
GATGCACATGGGCCGTGCCCAGCCAGTAGGTACAGCTCAAACCGCTACTG
CGCTGTGTGCGTCTAGTCATGCGCGTAGGTAGGATTCATTACTTGCTGGA
AATTGTGTGTGGGTCATGTCGCTGACTACGGACGCTGCTGTATTGTACAT
CAGTACCAATGTTGGGCATCCACCGCTCAGTATGTGACATGGGTTTCGTG
GTCCTGTTCAGGCATTTATTCTTCTTCGGGACAGCCAGCTCAAACAACAG
GATAAATACCCGCCCAACACACACATGTCTTTGTTTGGCAGGAATTGGCT
GCCGGGCCGAGCATGGTCGTCGTGGCATTCCATTCCCGTCCTGTTTGGCA
ACCTCAACCGCAAAGAGACTGTCGAAATCCTCGTATCCCAAACAACCTCC
AACACGTCCCATCTCCTGTGCCAATTGCAGACATAGCAGAGCTGGATGGC
GGGAGTGTCGCGGAGATCACATTCCCGAATCCCAACAACCTGACTACATT
TCACGTCAAGGTAAGTGATCGGAATTCGATTGTTTAGGTGCGAGGTGTAC
GGCCTGAGGCCATGGTGTAGTCTGCCGCCCCCGGGGAACAGGGAGGCTGT
GATGTTGTAAAATACCATTGATCCGTGCTGCTATCCTCGCCTCTCTCTAC
TCTTGCCTTCCTTCCCAAACATGTGCGGTTCATGCCGCACCCACCGCTCA
GGTCACGCCGGACAGCGGTTTCTGGAAAGGTGCCTCGTACAAGTTCACTT
TCAATGTGCCAGATCTGTATCCTCACGACCCCCCCAAGGTGAGTATGGGC
CCTTCTGGTCGCAAAACGCGTGCACGCACGAGCTACCTCCTTGGCCGTGG
CAGTGGATCTTGCTGACTTCCAAGATATTCAGATTTGTCGAGAGGATTGA
AATATACCAGGACGGGACAGATTAATTGATGTCTATCTATGAGGCCCAGT
TTCGGCATGGGGGAGGTCGAGATGGGCAAATCTGAGGTGCTCACGGTGTT
CAGCATGTCCGAAGTAGGTCGTGCTTAGCTCTATCGGTGATATAACAGTC
GTGGAGGACCGTTGTGATCGAAGAAATGTTGAACAACACCCCGCGTGATG
TTGGGTGAATACTTCGAAGTAATTAGATACTTTCGCGAATACAACTCGGA
TTATCACCAAAGTTGACCAGGCACTCAAGCTCGGGGTCGAGTTTCCAATT
TTGCGGGAAGAAATCGAAAAAATCAATGGTTTTGGCAAAAAAATCGGAGT
TTCGATAAAATTCCGATTATGGTGGTCCGATTTCTCTGAAATTTTATGCA
AGTGGCCTTTGGATAGCCATGATCGCCTAAGCCCATCAGATTGCCCCCCT
GGCGCATCCTTCGTGCCGAAAATGACATCTCAAAAGATTAGCATCATCTA
ATCTGTCCCGTAATGGTACAGAGTGCACCATGCCATGCAGGGTGGGGGTG
GAGATCAGGAATTTACTAAAGCATGATCTTGTTCTAGGAAGAGATTGCGG
ACCCAGTGGCCTTTGCTACGGATAGCGCGACATGAGTGATAGAAAACAGC
CGGCAGGAGTGGGCGGCCCGGGCAGGCAAGACAGGGCCAGGTGGGCAGGT
CACGGCGCCGACAGGGCGGAACCGGGCGCCAAGGGGTATTTTGGAGTCAC
ATGGCCAGCAGTGCAACCTCATTTGAGCTAGTTCACGTGGTGGCTCCGGC
CATGACGTCCCGCTCTCATGGGCGCGGCGGTACATCATGGGCGAGGCGGG
CCCTTCGGGCCAAGTTGTGGGCTGGCCACCCCCCATGTGCAATTTTGGCA
CTTCGATGTATACTACTTCCAAGTATATATATACTGTACTTCAAAGTACT
TTCAAGTACTCCCGGTGCAAGCAGCGTCCAGTACACTTTTTGAGGTGTGC
TACTGGCAGGGGATTTCACTCCGATGCAAGGTAGTGGATGTAATGGGCAC
CGTGCAGGTACCCTTGTACTCGTACTCAAAGTGCTCAAGTACTAAGTAGG
AGCTGATGGGGAAGAGCGAGTCTCATTGTATACAGTAGCTGTCATCCGTC
GGAGTAAGCAGTCCTTATAGGCGTCGCGGCCCTATCGGTGCTCCCGATGC
AGCTGGCCTCTCGCCCCGCTTGCCTAAACCACGTGAATCATGAGTACATA
CTGTACTTCAAAGAGCTTGACAGCATTCGAAACACTATGTACGGTAGTAT
TGTAAGGAACAACACGGGGCGAGGTGCGGGCTACGTCACTAGAGACCTCA
ACAATGGCCCTTGCTTGGTAGTACTTGTACACATACTTCTCGAAGTACAA
AGTATTCAAAGTACAAGTCTCTGCTCCACGCAGGACAATTTACGTTCCTG
ACTGTCTCTGTCGGGGTCCATGTGCGTATGCAGGTGCTCTGCGGTACGAA
GATCTACCACCCCAACATCAACCTGCAGGGCAACGTGTGCCTCAACATCC
TACGAGAGGACTGGAAGCCGGTGAGCCCATAGACACAAGTTGGCTCATTT
GGTGCAGCGCAACTTGTGCAGTCTCAAGGCATGCCAAGCGAGAAATGGCC
CTGGAATTGCAGTGCACTGCTGCTGTACATATGTTTTCCCTACTACTGGA
CTCGAAACCAGGCTCGGTCCTTGGCGTCTGGGCCAGCGCAAGTACTTCCC
ACGTACAACCGACCTCAGTCCCTTAGCAGCATAGAAGCGGCAAGTGCTTT
TTAATACTTCGAAGTACTTGGTATTTGGCAGTACGCAAAGTATGCAATAC
ATTGGGCCAGTTGATTGCATTCCAGCTGGGGAATCCCTGCCCCTCCAGCA
TTGTCCCGGCTCTAAGGATCACCCAGATCTTGAGTAGAGCACAACTTCAA
TAAGTACGTTGGGTCGTGGTCCCTTGTGTTTGAGAAAGCTTCACGTGGAC
AATGCGACGGTGCTCAGCCTGGAAGGCTACAGTGCAGTTGTGGTACATTT
AGGTTCGCATCGTGCTCATCCCCAACGAGTGGGATTGTGTCCACTGGAGC
TGGTTGTTCAGTTCGTTTGCTCAGGTGTATCCGGCAATCTTGAGTAAAAT
AGCCTAGTACACCGTGGTGGCCGTCAACAGGCGAAGGCAACCATCAGATA
TTGTACAGCGAGTGTGCGAGCATGAACGGTCGGCGCGTACACATAGTCGA
ACCAGTTCACTACAGTACTGTCCGTGTTCGTCCTTGCACAGTGCACGCTC
TACTAGTACATACTTACGTGAGTTCAGAAGCCACCCTCTCTTCCCGCAAC
ATGGACACTTGACTCGGCCGGCTGTGCTACGCCACTGCTCAGGTGCTGGA
CATCAACGCTGTAATCTACGGCCTCATCTACCTCTTCTACGAGCCCAATC
CCGAGGACCCGCTCAACCATGAAGCAGCAGAGCTGTACCGGAACGACATC
CAATCTTTTGAGCGTGTCGTCAAGCGAACGCTGCAGGGCGCCATGGTCGG
CGGGGAGGCCTTTGAACGGCTAGTCTGATGTTGCGTGTACTGCTTGATGG
AGCCCCTGAGAAGCGGCACCTCTCGCTACTTGTAGCTGCACTGTGTTTGT
GGCAGCCCATGCTCACATGGCCTTGTGCCTGGTACGGTTCACAGGCCCTG
GGCCGTGGCCTTGTACGAGTACTGCGTCATTATGACCTGATAGTAGTAAC
TGCTGCGGTGCGGCCCCCGGCCTCTTGGTTGCTTCATGATGATGTAGAGT
AGTTTTTGGTTGGAACAATGAGATCAAGATTCCTACCAACACTGTGTTGA
GGACAGGGCCTCAACATTCGGCATGTCTATCGGCGGCTCTTGCAATAACC
GCAGTATTAACTCCGCCTCGAACGAGGCGCGGGGTCAATGGTCTCAGGAC
TACAGCAAGCACCACGTGAGTACATACATACTCGTGTATATATAGCAACA
GCAACAACACAGGGTGAGGTGCAGGCCACGTCAGTCAAGACCTCCACAGT
GGCCCTTCCTTAGCTCGCCAGGAACAACGGTACATATAGAAGCTTGCCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig105:226284..230782+

>mRNA_S-ischiensis_contig105.1849.1 ID=mRNA_S-ischiensis_contig105.1849.1|Name=mRNA_S-ischiensis_contig105.1849.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1308bp|location=Sequence derived from alignment at S-ischiensis_contig105:226284..230782+ (Schizocladia ischiensis KU_0333)
ATGATCAGGCTCAAGAAGAAGCAGGAAGAAGAGGAAAACAGCCAGAATGG
GGAGGCAGCTTCCTCTGCAGGGGCATCGGGATCCGGGTCGTCCAGAACCC
CAGAGGAAAAGGGCGGACAGAAGATTCAGTTGCTGGGCATTGGGGGGCGC
AGGACAAGGAGCTCGAAAGCCGCTTCCACGAAGAAGACGCCAGGGGAAAT
TCGCATTCAAAAGGATGATCAGGCTCAAGAAGAAGCAGGAAGAAGAGGAA
AACAGCCAGAATGGGGAGGCAGCTTCCTCTGCAGGGGCATCGGGATCCGG
GTCGTCCAGAACCCCAGAGGAAAAGGGCGGACAGAAGATTCAGTTGCTGG
GCATTGGGGGGCGCAGGACAAGGAGCTCGAAAGCCGCTTCCACGAAGAAG
ACGCCAGGGGAAATTCGCATTCAAAAGGACATAGCAGAGCTGGATGGCGG
GAGTGTCGCGGAGATCACATTCCCGAATCCCAACAACCTGACTACATTTC
ACGTCAAGACATAGCAGAGCTGGATGGCGGGAGTGTCGCGGAGATCACAT
TCCCGAATCCCAACAACCTGACTACATTTCACGTCAAGGTCACGCCGGAC
AGCGGTTTCTGGAAAGGTGCCTCGTACAAGTTCACTTTCAATGTGCCAGA
TCTGTATCCTCACGACCCCCCCAAGGTCACGCCGGACAGCGGTTTCTGGA
AAGGTGCCTCGTACAAGTTCACTTTCAATGTGCCAGATCTGTATCCTCAC
GACCCCCCCAAGGTGCTCTGCGGTACGAAGATCTACCACCCCAACATCAA
CCTGCAGGGCAACGTGTGCCTCAACATCCTACGAGAGGACTGGAAGCCGG
TGCTCTGCGGTACGAAGATCTACCACCCCAACATCAACCTGCAGGGCAAC
GTGTGCCTCAACATCCTACGAGAGGACTGGAAGCCGGTGCTGGACATCAA
CGCTGTAATCTACGGCCTCATCTACCTCTTCTACGAGCCCAATCCCGAGG
ACCCGCTCAACCATGAAGCAGCAGAGCTGTACCGGAACGACATCCAATCT
TTTGAGCGTGTCGTCAAGCGAACGCTGCAGGGCGCCATGGTCGGCGGGGA
GGCCTTTGAACGGCTAGTCTGAGTGCTGGACATCAACGCTGTAATCTACG
GCCTCATCTACCTCTTCTACGAGCCCAATCCCGAGGACCCGCTCAACCAT
GAAGCAGCAGAGCTGTACCGGAACGACATCCAATCTTTTGAGCGTGTCGT
CAAGCGAACGCTGCAGGGCGCCATGGTCGGCGGGGAGGCCTTTGAACGGC
TAGTCTGA
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