mRNA_S-ischiensis_contig105.1847.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig105.1847.1
Unique NamemRNA_S-ischiensis_contig105.1847.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig105.1847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig105contigS-ischiensis_contig105:211541..212622 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size476
Cds size474
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig105.1847.1prot_S-ischiensis_contig105.1847.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig105 211541..212622 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815563.2801328-CDS-S-ischiensis_contig105:211540..2117611622815563.2801328-CDS-S-ischiensis_contig105:211540..211761Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 211541..211761 -
1695739772.4526334-CDS-S-ischiensis_contig105:211540..2117611695739772.4526334-CDS-S-ischiensis_contig105:211540..211761Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 211541..211761 -
1622815563.290901-CDS-S-ischiensis_contig105:212142..2122801622815563.290901-CDS-S-ischiensis_contig105:212142..212280Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 212143..212280 -
1695739772.463334-CDS-S-ischiensis_contig105:212142..2122801695739772.463334-CDS-S-ischiensis_contig105:212142..212280Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 212143..212280 -
1622815563.3006337-CDS-S-ischiensis_contig105:212507..2126221622815563.3006337-CDS-S-ischiensis_contig105:212507..212622Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 212508..212622 -
1695739772.4719214-CDS-S-ischiensis_contig105:212507..2126221695739772.4719214-CDS-S-ischiensis_contig105:212507..212622Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 212508..212622 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig105.1847.1

>prot_S-ischiensis_contig105.1847.1 ID=prot_S-ischiensis_contig105.1847.1|Name=mRNA_S-ischiensis_contig105.1847.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=158bp
MGEHAGEGLLSKAIRMSTCVGYTARDHVSSARHGKDASGVLFNDGADSGN
SCTLNDDNGNDKDNENTNNSSSNNNKGGAITMARAMVDREGSGAVPPRNM
STANKLQSAPIAQVKDCSNDSPDTGRTCTDELSSAPPGDGKAIPATSLTP
AVPASSSS
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mRNA from alignment at S-ischiensis_contig105:211541..212622-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig105.1847.1 ID=mRNA_S-ischiensis_contig105.1847.1|Name=mRNA_S-ischiensis_contig105.1847.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1082bp|location=Sequence derived from alignment at S-ischiensis_contig105:211541..212622- (Schizocladia ischiensis KU_0333)
ATGGGGGAGCATGCCGGGGAGGGCCTCCTCTCCAAGGCCATCCGCATGAG
CACATGCGTGGGCTACACAGCCCGAGATCACGTGTCGTCAGCCAGGCACG
GCAAGGATGCTTCTGGTGAGATGCCCAGGCTGAACCGCTTCCTTGCGGCC
AGAGTACACCCTTTTGCCCCCAGTGTTACACGCTGAAGCATGGTGTTTGC
GGCCCCTTGAGCGTGTCCTCTGGGTTCTGGATGAGGTAGGAAGATCTAGA
ACTGCCTCACACACCGGTACAAACACTCACCGACCCCGCCCTTTGGCATC
CCGCGCACTGCCCGCGTCTGAACGCTGTGCATGCTCGTTCAGGCGTGCTG
TTTAATGACGGCGCTGACAGTGGCAACAGCTGCACCCTCAACGACGACAA
CGGCAATGACAAGGACAATGAAAACACCAATAACAGCAGCAGCAACAACA
ACAAGGGGGGTGCCATCACGATGGCCCGCGGTGAGCCATGTACAGTACAT
GCTGTGCACCACGCCTGAGTAGCGCCCACTCCCAAATGATTAGTGCAACA
CGAACGCCCGTAGTCAGGTGCGTAACAAATACTCGTGCCGACCATGTAAC
GCTTGTGGCGGCCATGCACTCGCACAAGTCTGTAGCCGCCAATGTGTAGC
TGCCGCCTCAAACCTGTCTGCTACCTACAGTACAGAGTAGGTACTTCATA
GCACTGTAGTACCTTGGAAAAATGCGACCTCACAGTGCTCGTAACACACC
CCTCCCCAGACCTTGACACTAATCATTAGATACTCGCCCCATTCCCCCAC
CGGCAACGTGCGCCGTGCGACCCCCCCCCCTGCGCGACGCAATGGCATGC
ACCACGAGCAGCCATGGTTGACCGGGAGGGCAGCGGAGCCGTCCCTCCCC
GCAACATGTCCACCGCGAACAAGCTGCAATCCGCGCCCATCGCGCAAGTC
AAGGACTGCAGCAACGACTCCCCCGACACTGGCCGCACCTGCACCGATGA
GCTGTCCTCCGCCCCCCCCGGCGACGGCAAGGCCATCCCGGCCACCTCTC
TGACGCCGGCGGTGCCCGCCTCTTCCTCCTCA
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Coding sequence (CDS) from alignment at S-ischiensis_contig105:211541..212622-

>mRNA_S-ischiensis_contig105.1847.1 ID=mRNA_S-ischiensis_contig105.1847.1|Name=mRNA_S-ischiensis_contig105.1847.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=948bp|location=Sequence derived from alignment at S-ischiensis_contig105:211541..212622- (Schizocladia ischiensis KU_0333)
ATGGGGGAGCATGCCGGGGAGGGCCTCCTCTCCAAGGCCATCCGCATGAG
CACATGCGTGGGCTACACAGCCCGAGATCACGTGTCGTCAGCCAGGCACG
GCAAGGATGCTTCTGATGGGGGAGCATGCCGGGGAGGGCCTCCTCTCCAA
GGCCATCCGCATGAGCACATGCGTGGGCTACACAGCCCGAGATCACGTGT
CGTCAGCCAGGCACGGCAAGGATGCTTCTGGCGTGCTGTTTAATGACGGC
GCTGACAGTGGCAACAGCTGCACCCTCAACGACGACAACGGCAATGACAA
GGACAATGAAAACACCAATAACAGCAGCAGCAACAACAACAAGGGGGGTG
CCATCACGATGGCCCGCGGCGTGCTGTTTAATGACGGCGCTGACAGTGGC
AACAGCTGCACCCTCAACGACGACAACGGCAATGACAAGGACAATGAAAA
CACCAATAACAGCAGCAGCAACAACAACAAGGGGGGTGCCATCACGATGG
CCCGCGCCATGGTTGACCGGGAGGGCAGCGGAGCCGTCCCTCCCCGCAAC
ATGTCCACCGCGAACAAGCTGCAATCCGCGCCCATCGCGCAAGTCAAGGA
CTGCAGCAACGACTCCCCCGACACTGGCCGCACCTGCACCGATGAGCTGT
CCTCCGCCCCCCCCGGCGACGGCAAGGCCATCCCGGCCACCTCTCTGACG
CCGGCGGTGCCCGCCTCTTCCTCCTCACCATGGTTGACCGGGAGGGCAGC
GGAGCCGTCCCTCCCCGCAACATGTCCACCGCGAACAAGCTGCAATCCGC
GCCCATCGCGCAAGTCAAGGACTGCAGCAACGACTCCCCCGACACTGGCC
GCACCTGCACCGATGAGCTGTCCTCCGCCCCCCCCGGCGACGGCAAGGCC
ATCCCGGCCACCTCTCTGACGCCGGCGGTGCCCGCCTCTTCCTCCTCA
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