mRNA_S-ischiensis_contig105.1829.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig105.1829.1
Unique NamemRNA_S-ischiensis_contig105.1829.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig105.1829.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig105contigS-ischiensis_contig105:80669..80989 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815563.7835186-CDS-S-ischiensis_contig105:80668..809891622815563.7835186-CDS-S-ischiensis_contig105:80668..80989Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 80669..80989 +
1695739772.6378715-CDS-S-ischiensis_contig105:80668..809891695739772.6378715-CDS-S-ischiensis_contig105:80668..80989Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 80669..80989 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig105.1829.1prot_S-ischiensis_contig105.1829.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig105 80669..80989 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig105.1829.1

>prot_S-ischiensis_contig105.1829.1 ID=prot_S-ischiensis_contig105.1829.1|Name=mRNA_S-ischiensis_contig105.1829.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=107bp
HGASAGSGHGAALARTAKGFGSVAVDPSSVFTPEQEAQGREQDSCRPHPL
GVMGRTDAEQARVPQGEEGDEAVGLANGQCERPGSPRWALSVLGAAAEVL
SSPGRLT
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mRNA from alignment at S-ischiensis_contig105:80669..80989+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig105.1829.1 ID=mRNA_S-ischiensis_contig105.1829.1|Name=mRNA_S-ischiensis_contig105.1829.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=321bp|location=Sequence derived from alignment at S-ischiensis_contig105:80669..80989+ (Schizocladia ischiensis KU_0333)
CACGGCGCCAGTGCCGGCTCCGGCCATGGTGCGGCCCTAGCCCGGACTGC
CAAGGGTTTTGGCTCGGTGGCAGTCGACCCCAGCTCGGTATTCACCCCCG
AACAAGAAGCCCAGGGCCGCGAGCAGGACTCGTGCCGCCCCCACCCCTTG
GGGGTGATGGGCCGCACGGACGCCGAGCAGGCGCGGGTGCCGCAAGGGGA
AGAGGGCGATGAGGCCGTGGGGTTGGCGAATGGCCAGTGTGAGCGCCCGG
GCTCGCCCAGGTGGGCGCTGAGCGTGTTGGGGGCGGCCGCGGAGGTGCTC
TCGTCCCCAGGGCGGCTCACC
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Coding sequence (CDS) from alignment at S-ischiensis_contig105:80669..80989+

>mRNA_S-ischiensis_contig105.1829.1 ID=mRNA_S-ischiensis_contig105.1829.1|Name=mRNA_S-ischiensis_contig105.1829.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=642bp|location=Sequence derived from alignment at S-ischiensis_contig105:80669..80989+ (Schizocladia ischiensis KU_0333)
CACGGCGCCAGTGCCGGCTCCGGCCATGGTGCGGCCCTAGCCCGGACTGC
CAAGGGTTTTGGCTCGGTGGCAGTCGACCCCAGCTCGGTATTCACCCCCG
AACAAGAAGCCCAGGGCCGCGAGCAGGACTCGTGCCGCCCCCACCCCTTG
GGGGTGATGGGCCGCACGGACGCCGAGCAGGCGCGGGTGCCGCAAGGGGA
AGAGGGCGATGAGGCCGTGGGGTTGGCGAATGGCCAGTGTGAGCGCCCGG
GCTCGCCCAGGTGGGCGCTGAGCGTGTTGGGGGCGGCCGCGGAGGTGCTC
TCGTCCCCAGGGCGGCTCACCCACGGCGCCAGTGCCGGCTCCGGCCATGG
TGCGGCCCTAGCCCGGACTGCCAAGGGTTTTGGCTCGGTGGCAGTCGACC
CCAGCTCGGTATTCACCCCCGAACAAGAAGCCCAGGGCCGCGAGCAGGAC
TCGTGCCGCCCCCACCCCTTGGGGGTGATGGGCCGCACGGACGCCGAGCA
GGCGCGGGTGCCGCAAGGGGAAGAGGGCGATGAGGCCGTGGGGTTGGCGA
ATGGCCAGTGTGAGCGCCCGGGCTCGCCCAGGTGGGCGCTGAGCGTGTTG
GGGGCGGCCGCGGAGGTGCTCTCGTCCCCAGGGCGGCTCACC
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