mRNA_S-ischiensis_contig105.1826.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig105.1826.1
Unique NamemRNA_S-ischiensis_contig105.1826.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig105.1826.1 vs. uniprot
Match: A0A835YVM5_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVM5_9STRA)

HSP 1 Score: 204 bits (520), Expect = 1.700e-61
Identity = 104/225 (46.22%), Postives = 129/225 (57.33%), Query Frame = 1 
Query:   97 KWTGREDDMLADALSQC-----KGKSWADVARVMGSGFTEQQVVSRWNKLAKVLAHKEPWSPEEDQRIIQMVSHLGPMKWGAISYHLPGRVGKQCRERWHNHLNPDISRGPWTEDEDRTIIMAQARFGNKWAEMAKLLPGRTDNAIKNRWNSSIKKKLQVYLETKYGSSFATTKGKPXXXXXXXXXXXXKDDDCGGAHCPADARFDLRGDVDAAVAAVRDNRSFR 756
            KWT  ED  L   + +C     K  SW  ++  MG   TE Q   RW K       K PW+ EED ++I++V   G  KW  I+  LPGRVGKQCRERWHNHLNPD+ + PW  DEDR II  Q+ +GNKWAEM++ LPGRTDNAIKNRWNSS+K+ +  YL+ KYGS F + +  P                       A  RFDLRGD+D  +A V   R+ R
Sbjct:    4 KWTKAEDAELKKLVEECQAEGWKKSSWKTISDGMGER-TETQCQHRWQKALNPTVAKGPWTAEEDAKVIEVVIQHGAQKWTKIASFLPGRVGKQCRERWHNHLNPDVKKEPWRADEDRVIIEKQSEYGNKWAEMSQFLPGRTDNAIKNRWNSSLKRHIAAYLKAKYGSEFTSARSPP-----------------------ASGRFDLRGDLDGVMAHVERERAPR 204
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BLAST of mRNA_S-ischiensis_contig105.1826.1 vs. uniprot
Match: A0A7S3CAI6_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3CAI6_9CHLO)

HSP 1 Score: 193 bits (491), Expect = 2.210e-56
Identity = 86/167 (51.50%), Postives = 117/167 (70.06%), Query Frame = 1 
Query:   58 GRARPPRPPPSPMKWTGREDDMLADALSQCKGKSWADVARVMGSGFTEQQVVSRWNKLAKVLAHKEPWSPEEDQRIIQMVSHLGPMKWGAISYHLPGRVGKQCRERWHNHLNPDISRGPWTEDEDRTIIMAQARFGNKWAEMAKLLPGRTDNAIKNRWNSSIKKKLQ 558
            G+   P+   S   WT  ED++L  A+ QC+GK+W  +A    +  ++ Q + RW K+      K PW+ EED++II +V   GP KW  I+ +LPGR+GKQCRERWHNHLNPDI + PW+ DED+ +I A  +FGNKWAE++KLLPGRTDNAIKNRWNS++K+K +
Sbjct:   93 GKTGAPKRKSSKGGWTSEEDEILRRAVQQCEGKNWKKIAEYF-TDRSDVQCLHRWQKVLNPDLIKGPWTKEEDEKIIALVKEHGPKKWSVIADNLPGRIGKQCRERWHNHLNPDIKQDPWSVDEDKVLIDAHKKFGNKWAEISKLLPGRTDNAIKNRWNSTMKRKYE 258
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BLAST of mRNA_S-ischiensis_contig105.1826.1 vs. uniprot
Match: B8CFV0_THAPS (MYB DNA binding protein/ transcription factor-like protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CFV0_THAPS)

HSP 1 Score: 187 bits (474), Expect = 2.880e-55
Identity = 83/156 (53.21%), Postives = 110/156 (70.51%), Query Frame = 1 
Query:  100 WTGREDDMLADALSQCKGKSWADVARVMGSGFTEQQVVSRWNKLAKVLAHKEPWSPEEDQRIIQMVSHLGPMKWGAISYHLPGRVGKQCRERWHNHLNPDISRGPWTEDEDRTIIMAQARFGNKWAEMAKLLPGRTDNAIKNRWNSSIKKKLQVYL 567
            W+  ED+ L +A+ +   K+W  +A+ +    TE Q + RW K+ K    K PW+PEED  ++++V   G  KW  I+ HLPGR+GKQCRERWHNHLNP ISRG W+ +EDRTI+      GN+WAE++KLLPGRTDNAIKN WNSS+KKK++ YL
Sbjct:    1 WSAEEDEALRNAVERNGPKNWKLIAKHLPQR-TEVQCLHRWQKVLKPSLVKGPWTPEEDHLVLRLVQKYGAKKWSLIASHLPGRIGKQCRERWHNHLNPGISRGAWSFEEDRTILQFHENVGNRWAEISKLLPGRTDNAIKNHWNSSMKKKIEKYL 155
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BLAST of mRNA_S-ischiensis_contig105.1826.1 vs. uniprot
Match: A5BPA2_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BPA2_VITVI)

HSP 1 Score: 188 bits (477), Expect = 6.210e-55
Identity = 83/157 (52.87%), Postives = 109/157 (69.43%), Query Frame = 1 
Query:   97 KWTGREDDMLADALSQCKGKSWADVARVMGSGFTEQQVVSRWNKLAKVLAHKEPWSPEEDQRIIQMVSHLGPMKWGAISYHLPGRVGKQCRERWHNHLNPDISRGPWTEDEDRTIIMAQARFGNKWAEMAKLLPGRTDNAIKNRWNSSIKKKLQVYL 567
            +WT  ED++L  A+ + KGK+W  +A       T+ Q + RW K+      K PWS EED+ II++V+  GP KW  I+  LPGR+GKQCRERWHNHLNP I++  WT++E+  +I A   +GNKWAE+ K LPGRTDNAIKN WNSS+KKKL+ YL
Sbjct:   17 QWTAEEDELLCKAVQRFKGKNWKKIAECF-KDRTDVQCLHRWQKVLNPELIKGPWSKEEDEIIIELVNKYGPKKWSTIAQALPGRIGKQCRERWHNHLNPAINKEAWTQEEELALIHAHQIYGNKWAELTKFLPGRTDNAIKNHWNSSVKKKLESYL 172
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BLAST of mRNA_S-ischiensis_contig105.1826.1 vs. uniprot
Match: Q5QT30_ORYSA (Transcription factor (Fragment) n=1 Tax=Oryza sativa TaxID=4530 RepID=Q5QT30_ORYSA)

HSP 1 Score: 188 bits (477), Expect = 1.810e-54
Identity = 84/158 (53.16%), Postives = 108/158 (68.35%), Query Frame = 1 
Query:  100 WTGREDDMLADALSQCKGKSWADVARVMGSGFTEQQVVSRWNKLAKVLAHKEPWSPEEDQRIIQMVSHLGPMKWGAISYHLPGRVGKQCRERWHNHLNPDISRGPWTEDEDRTIIMAQARFGNKWAEMAKLLPGRTDNAIKNRWNSSIKKKLQVYLET 573
            WT  ED +L+ A+   KGK+W  +A       T+ Q + RW K+      K PWS EED  I+QMV+ LGP KW  I+  LPGR+GKQCRERWHNHLNP I++  WT++E+ T+I A   +GNKWAE+ K LPGRTDNAIKN WNSS+KKK+  Y+ +
Sbjct:   53 WTPEEDSILSRAVQTYKGKNWKKIAECFPDR-TDVQCLHRWQKVLNPELVKGPWSKEEDDIIVQMVNKLGPKKWSTIAQALPGRIGKQCRERWHNHLNPGINKEAWTQEEEITLIHAHRMYGNKWAELTKFLPGRTDNAIKNHWNSSVKKKVDSYMSS 209
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BLAST of mRNA_S-ischiensis_contig105.1826.1 vs. uniprot
Match: UPI0020092A07 (transcription factor MYB3R-1-like n=1 Tax=Salvia hispanica TaxID=49212 RepID=UPI0020092A07)

HSP 1 Score: 187 bits (475), Expect = 3.190e-54
Identity = 82/168 (48.81%), Postives = 114/168 (67.86%), Query Frame = 1 
Query:   97 KWTGREDDMLADALSQCKGKSWADVARVMGSGFTEQQVVSRWNKLAKVLAHKEPWSPEEDQRIIQMVSHLGPMKWGAISYHLPGRVGKQCRERWHNHLNPDISRGPWTEDEDRTIIMAQARFGNKWAEMAKLLPGRTDNAIKNRWNSSIKKKLQVYLETKYGSSFATT 600
            +WT  ED++L  A+ + KGK+W  +A        + Q + RW K+      K PWS EED+ I+++V+  GP KW  I+ HLPGR+GKQCRERWHNHLNP+I++  WT++E+  +I A   +GNKWAE+ K LPGRTDNAIKN WNSS+KKK+ +Y+ +   S +  T
Sbjct:   42 QWTPEEDEILRMAVQRFKGKNWRKIAECF-KDRADVQCLHRWQKVLNPELVKGPWSKEEDEVIVELVNKYGPKKWSTIAQHLPGRIGKQCRERWHNHLNPNINKEAWTQEEELALIRAHQIYGNKWAELTKFLPGRTDNAIKNHWNSSVKKKVDMYVASGLLSKYQGT 208
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BLAST of mRNA_S-ischiensis_contig105.1826.1 vs. uniprot
Match: S8CXI4_9LAMI (Uncharacterized protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8CXI4_9LAMI)

HSP 1 Score: 187 bits (475), Expect = 3.390e-54
Identity = 86/158 (54.43%), Postives = 110/158 (69.62%), Query Frame = 1 
Query:  100 WTGREDDMLADALSQCKGKSWADVARVMGSGFTEQQVVSRWNKLAKVLAHKEPWSPEEDQRIIQMVSHLGPMKWGAISYHLPGRVGKQCRERWHNHLNPDISRGPWTEDEDRTIIMAQARFGNKWAEMAKLLPGRTDNAIKNRWNSSIKKKLQVYLET 573
            WT  ED+ L +A++  KGKSW  +A       TE Q + RW K+      K PW+ EED++I++MV+  GP KW  I+  LPGR+GKQCRERWHNHLNP+I +  W+ +E+ T++ A    GNKWAE+AKLLPGRTDNAIKN WNSS+KKKL  YL T
Sbjct:   68 WTPDEDETLKNAVAAHKGKSWKKIAEFFPCR-TEVQCLHRWQKVLNPELIKGPWTLEEDEKIVEMVAKHGPTKWSVIAKSLPGRIGKQCRERWHNHLNPEIKKDAWSLEEELTLLNAHRVHGNKWAELAKLLPGRTDNAIKNHWNSSLKKKLDFYLVT 224
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BLAST of mRNA_S-ischiensis_contig105.1826.1 vs. uniprot
Match: A0A6P5G2P3_ANACO (myb-related protein 3R-1-like isoform X2 n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5G2P3_ANACO)

HSP 1 Score: 186 bits (473), Expect = 4.840e-54
Identity = 84/160 (52.50%), Postives = 109/160 (68.12%), Query Frame = 1 
Query:  100 WTGREDDMLADALSQCKGKSWADVARVMGSGFTEQQVVSRWNKLAKVLAHKEPWSPEEDQRIIQMVSHLGPMKWGAISYHLPGRVGKQCRERWHNHLNPDISRGPWTEDEDRTIIMAQARFGNKWAEMAKLLPGRTDNAIKNRWNSSIKKKLQVYLETKY 579
            WT +ED+ L  A+   KG+ W  +A       TE Q + RW K+      K PW+PEED+ II++V   GP KW  I+  LPGR+GKQCRERWHNHLNP I +  WT DE+ ++I A    GNKWAE+AK+LPGRTDN+IKN WNSS+KKKL+ Y +T++
Sbjct:   65 WTPQEDETLRKAVEAYKGRCWKKIAEFFPDR-TEVQCLHRWQKVLNPELIKGPWTPEEDEIIIELVKKYGPAKWSVIARSLPGRIGKQCRERWHNHLNPKIKKDAWTADEEISLINAHRVHGNKWAEIAKVLPGRTDNSIKNHWNSSLKKKLEFYSQTEF 223
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BLAST of mRNA_S-ischiensis_contig105.1826.1 vs. uniprot
Match: A0A6H5KYM4_9PHAE (MYB protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYM4_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 6.640e-54
Identity = 108/251 (43.03%), Postives = 145/251 (57.77%), Query Frame = 1 
Query:   97 KWTGREDDMLADALSQCKGKS--WADVARVMGSGFTEQQVVSRWNKLAKVLAHKEPWSPE-EDQRIIQMVSHLGPMKWGAISYHLPGRVGKQCRERW------HNHLNPDISRGPWTEDEDRTIIMAQARFGNKWAEMAKLLPGRTDNAIKNRWNSSIKKKLQVYLETKYGSSFATT--KGKPXXXXXXXXXXXXKDDDCGG----------------AHCPADARFDLRGDVDAAVAAVRDNRSFRAVAK 768
            KWT  ED  L   +    G    W ++++V+ +G T  Q  SRW K+      K  W+PE EDQ+++++V   GP +W AIS   PGR+GKQCRERW      +NHL+P +S+ PW+E+EDR II  QA  GNKWAEM++LLPGRTDN IKN WNSS+K++LQVYLE  YGS++     +G+P               + GG                   P   RFDLRGDVD+A+ AVR  ++  AV +
Sbjct:    3 KWTKDEDSQLEQLVVAASGAEIDWDNISQVLDNGRTGAQCCSRWQKVLHPQTIKGAWTPEVEDQKMVELVGLFGPKRWSAISQRFPGRIGKQCRERWVSATSWNNHLDPALSKAPWSEEEDRIIIETQAIHGNKWAEMSRLLPGRTDNHIKNHWNSSMKRRLQVYLEKTYGSAYGDVPEQGQPSGKAEATPSPLLIGGESGGKGKKRRAAKHKLNKSATFVPEGGRFDLRGDVDSALRAVRSGKAAGAVGR 253
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BLAST of mRNA_S-ischiensis_contig105.1826.1 vs. uniprot
Match: A0A1E7FEX6_9STRA (Ternary protein-Dna Complex1 (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEX6_9STRA)

HSP 1 Score: 183 bits (465), Expect = 1.220e-53
Identity = 79/155 (50.97%), Postives = 112/155 (72.26%), Query Frame = 1 
Query:   94 MKWTGREDDMLADALSQCKGKSWADVARVMGSGFTEQQVVSRWNKLAKVLAHKEPWSPEEDQRIIQMVSHLGPMKWGAISYHLPGRVGKQCRERWHNHLNPDISRGPWTEDEDRTIIMAQARFGNKWAEMAKLLPGRTDNAIKNRWNSSIKKKLQ 558
            +KWT  ED+ L +A+ +   K+W  ++  +  G +E Q + RW K+ K    K PW+ EED++++++V   G  KW  I+ +LPGR+GKQCRERWHNHLNPDIS+  W EDEDRTI+ +    GN+WAE+AK+LPGRTDNAIKN WNSS+++K++
Sbjct:   25 IKWTKHEDETLKEAVEEHGAKNWKLISSRL-PGRSEVQCLHRWQKVLKPSLVKGPWTAEEDRKVVELVKKHGAKKWSLIATNLPGRIGKQCRERWHNHLNPDISKEAWKEDEDRTILESHITLGNRWAEIAKMLPGRTDNAIKNHWNSSMRRKIE 178
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig105.1826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YVM5_9STRA1.700e-6146.22Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
A0A7S3CAI6_9CHLO2.210e-5651.50Hypothetical protein (Fragment) n=1 Tax=Chloropico... [more]
B8CFV0_THAPS2.880e-5553.21MYB DNA binding protein/ transcription factor-like... [more]
A5BPA2_VITVI6.210e-5552.87Uncharacterized protein n=1 Tax=Vitis vinifera Tax... [more]
Q5QT30_ORYSA1.810e-5453.16Transcription factor (Fragment) n=1 Tax=Oryza sati... [more]
UPI0020092A073.190e-5448.81transcription factor MYB3R-1-like n=1 Tax=Salvia h... [more]
S8CXI4_9LAMI3.390e-5454.43Uncharacterized protein (Fragment) n=1 Tax=Genlise... [more]
A0A6P5G2P3_ANACO4.840e-5452.50myb-related protein 3R-1-like isoform X2 n=1 Tax=A... [more]
A0A6H5KYM4_9PHAE6.640e-5443.03MYB protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP... [more]
A0A1E7FEX6_9STRA1.220e-5350.97Ternary protein-Dna Complex1 (Fragment) n=1 Tax=Fr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig105contigS-ischiensis_contig105:75327..78459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score195.3
Seed ortholog evalue4.8e-47
Seed eggNOG ortholog4155.Migut.E01513.1.p
KEGG koko:K09420,ko:K21769
KEGG Pathwayko04151,ko04218,ko05166,map04151,map04218,map05166
GOsGO:0000981,GO:0000988,GO:0000989,GO:0001067,GO:0001076,GO:0001101,GO:0001134,GO:0001135,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0003712,GO:0003713,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006275,GO:0006355,GO:0006357,GO:0008150,GO:0008285,GO:0009605,GO:0009607,GO:0009608,GO:0009610,GO:0009620,GO:0009623,GO:0009719,GO:0009725,GO:0009751,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0014070,GO:0019219,GO:0019222,GO:0030154,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0032465,GO:0032502,GO:0032875,GO:0042127,GO:0042221,GO:0042493,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0044212,GO:0044424,GO:0044464,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0046677,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051302,GO:0051704,GO:0051707,GO:0051726,GO:0060255,GO:0065007,GO:0080090,GO:0090329,GO:0097159,GO:0140110,GO:1901181,GO:1901363,GO:1901700,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2001023,GO:2001024,GO:2001038,GO:2001039,GO:2001141
EggNOG free text desc.Myb-like DNA-binding domain
EggNOG OGs37PMK@33090,3G7Z4@35493,44IKK@71274,COG5147@1,KOG0048@2759
COG Functional cat.K
Best tax levelasterids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03000
Hectar predicted targeting categoryother localisation
Exons7
Model size1045
Cds size1044
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815564.1773815-CDS-S-ischiensis_contig105:75326..754401622815564.1773815-CDS-S-ischiensis_contig105:75326..75440Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 75327..75440 +
1695739772.8566766-CDS-S-ischiensis_contig105:75326..754401695739772.8566766-CDS-S-ischiensis_contig105:75326..75440Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 75327..75440 +
1622815564.2176235-CDS-S-ischiensis_contig105:75542..756981622815564.2176235-CDS-S-ischiensis_contig105:75542..75698Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 75543..75698 +
1695739772.8674726-CDS-S-ischiensis_contig105:75542..756981695739772.8674726-CDS-S-ischiensis_contig105:75542..75698Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 75543..75698 +
1622815564.2355325-CDS-S-ischiensis_contig105:75914..760181622815564.2355325-CDS-S-ischiensis_contig105:75914..76018Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 75915..76018 +
1695739772.8755715-CDS-S-ischiensis_contig105:75914..760181695739772.8755715-CDS-S-ischiensis_contig105:75914..76018Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 75915..76018 +
1622815564.2484148-CDS-S-ischiensis_contig105:76542..765971622815564.2484148-CDS-S-ischiensis_contig105:76542..76597Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 76543..76597 +
1695739772.883727-CDS-S-ischiensis_contig105:76542..765971695739772.883727-CDS-S-ischiensis_contig105:76542..76597Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 76543..76597 +
1622815564.2608907-CDS-S-ischiensis_contig105:76921..769951622815564.2608907-CDS-S-ischiensis_contig105:76921..76995Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 76922..76995 +
1695739772.891749-CDS-S-ischiensis_contig105:76921..769951695739772.891749-CDS-S-ischiensis_contig105:76921..76995Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 76922..76995 +
1622815564.2704883-CDS-S-ischiensis_contig105:77499..777001622815564.2704883-CDS-S-ischiensis_contig105:77499..77700Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 77500..77700 +
1695739772.9001026-CDS-S-ischiensis_contig105:77499..777001695739772.9001026-CDS-S-ischiensis_contig105:77499..77700Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 77500..77700 +
1622815564.280068-CDS-S-ischiensis_contig105:78119..784591622815564.280068-CDS-S-ischiensis_contig105:78119..78459Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 78120..78459 +
1695739772.908411-CDS-S-ischiensis_contig105:78119..784591695739772.908411-CDS-S-ischiensis_contig105:78119..78459Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 78120..78459 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig105.1826.1prot_S-ischiensis_contig105.1826.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig105 75327..78459 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig105.1826.1

>prot_S-ischiensis_contig105.1826.1 ID=prot_S-ischiensis_contig105.1826.1|Name=mRNA_S-ischiensis_contig105.1826.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=348bp
MSNDSNQRAGGIAAGLRGGGRARPPRPPPSPMKWTGREDDMLADALSQCK
GKSWADVARVMGSGFTEQQVVSRWNKLAKVLAHKEPWSPEEDQRIIQMVS
HLGPMKWGAISYHLPGRVGKQCRERWHNHLNPDISRGPWTEDEDRTIIMA
QARFGNKWAEMAKLLPGRTDNAIKNRWNSSIKKKLQVYLETKYGSSFATT
KGKPKGRGSGGGRGGGKDDDCGGAHCPADARFDLRGDVDAAVAAVRDNRS
FRAVAKAQLAAPLPTARDAGPRPAGSSSRGGAGVARLRAAAAVTNAAAAP
ASTAWKLRGRPPPQPYDLPPALGQPPPPPPPRPQGVVKMQRASTTAAA
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mRNA from alignment at S-ischiensis_contig105:75327..78459+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig105.1826.1 ID=mRNA_S-ischiensis_contig105.1826.1|Name=mRNA_S-ischiensis_contig105.1826.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3133bp|location=Sequence derived from alignment at S-ischiensis_contig105:75327..78459+ (Schizocladia ischiensis KU_0333)
ATGTCCAACGATTCAAATCAGCGAGCGGGCGGGATCGCAGCGGGGCTGCG
GGGAGGGGGAAGAGCGCGGCCACCGCGGCCGCCGCCATCGCCAATGAAGT
GGACTGGGCGTGAGGTGAGAAGAAAGGAATTTCAGATGTGGCGCACTCGC
CAAAAGGAGGGTTGACCTCGATTTTGCGGCGGCTGACGATTTCCGCTCCC
CGTGCCCGCCGTACAGGATGACATGCTTGCCGACGCCCTTAGTCAGTGCA
AGGGGAAGAGTTGGGCGGACGTGGCACGAGTGATGGGCTCGGGGTTCACG
GAGCAGCAAGTTGTGAGCCGCTGGAACAAGCTGGCCAAGGTGCTGGCGCA
TAAGGAACCCTGGAGCCCGGAGGTAGGCATCCCCTGGCCTCACGCCACGC
CCCGGGCGCCCTGCATTATGCTCTAGACGCACGTGTGGGACTGTGGGAGG
AAAACTACCCGCTGGAAGCTGCCTGGGATGCCGTCAAATCCCCCTGCTGT
GCTGTTGCTTCACCCCCCGTGCAACCCCTGTGCGCCGGCGCCAACCGCCC
CCCCCTCCGCGCCTGTTGCACCTCTCCCCGGCCCGCAGGAGGACCAGCGG
ATCATACAGATGGTAAGCCATTTGGGTCCTATGAAGTGGGGCGCCATCTC
TTACCACCTTCCCGGGCGCGTCGGCAAGCAGTGCCGGGAAAGGTGGGTGC
CCGCCCCCTGTCATGGCATAAGAGTATATGCGCCCGGGGCGCCAAGGGCC
TGGGCCGCTCCGGAGTTGTGGACGGCACAGCGTGGTTGCAGGGAGCGATG
TGACTGTTCCCCCCCCCCTGTCAGCCATGGTTCTCCTTGGTCTCAACCCG
TCCAAGCACGTTGGGGATAGTCCCTCAGTCCCGTCCGGGTCGCAGCACAA
ATCCGTTTCGTGACACTGCTACTGCTACTTTGAGCTACGGTAGTACTCGT
CGTACACATGCATTCCCGTAGTGCTTCAAACAGCAGTAGCACTTGGTCCC
CCAGGAGTCTTGCATAGCACCCGTCAAGGGCGGTCCATGGCGGTGCTTCG
CATGCACACGGCCCCGACAGCGGAGGCTTGCTGGCTGAGGGGCCATCCCA
GATCGGGGGTACGCATGCATCCAAACGTATCTCCGGTTTGTCGTTTCCGT
CCTCACTGTCGGTCTGCCCCCCTTGCGGTCTTGTGTTCCTCCCGCTTCCC
GCGACGCCTTCTGCAGGTGGCACAACCACCTCAACCCCGACATATCAAGG
GGGCCTTGGACCGAAGATGAGGTAAGAAGCCCAGGACTGACAATGCATGA
TCCCCTCTTCTGGTTGTGAAGGGGGACGGGGACGACAAAGCAGATTCTGG
GCATCATTGTCAGGCCCTGGCACTCCCAGCCGGGAGAACGGGCTTTGCAG
AAGGACCTGTTGGCAATCCACAAGATCTGGTTCTGGCATTGCACCATGGC
CATGGCCAGCTTGCAATGGAACTACTCCACTCGTACTGGTCCGCTTCGCA
CCCCCTCCTTTGCACGCCTGCTACTTACTGCAGTGCAACCTACTAGTAAG
TTGCCTCCTATTCAACTCGCGCACATTTGTTTGTCGTCTTGCCAGGACCG
CACCATCATCATGGCACAGGCCCGGTTCGGCAACAAGTGGGCCGAGATGG
CCAAACTGCTGCCGGGGAGGTGAGTCCGGCTGTACTGTAGGGGTGTGCTC
GAGTGCACTACTCAGAGCAGCGCTCCACCATCCTCCACTGACTACTACAG
CAGCGTGTACTCACGTTCGGACGAGGTTTCTCGTCTCTGTGCATGCCCTG
GACCCGAACGATCCTTGTCTTTGCTCCTTCTCGTGGATCGCTGGCCAGCT
GTAGCTTTCGCCATTGGCCACGCGTCCTACAGTAGTACGGGTATTATTTT
ATCCTGCCGCTGTCTGCGGGGGATTGTCGGCTTTTGGCCATGACAGACCC
ACTACAGCACAAGTATCCCTGGAGCTCCGCCCGGGGTGGCCCGGAAATAC
CGAGTCATGCGTGGGCTCCATTGGCCTCGCTGTGGACGAGGGAGAGTGCG
GCGCTGGGATGGACGAGATGCTCCTGCTGGCTGGCCACACCATCCACTAA
AACACACTACCTCACATGCACACACGCCATATGCACACCTGTGTTTTTCC
TGGCCCCTGGGGGGCTTTTGCAGGACGGACAACGCCATCAAGAACCGGTG
GAACTCCAGCATCAAGAAGAAGCTGCAGGTGTACCTGGAGACGAAATATG
GGTCCTCATTTGCCACCACCAAGGGCAAACCCAAAGGCAGGGGCAGCGGC
GGCGGCCGCGGTGGCGGCAAGGACGACGACTGTGGCGGGGCGCATTGCCC
GGCAGACGCCCGTTTCGATCTACGGTGCGTATCCTAGGTTTGGGAGGCGT
TGGTTGACCCTGCCAGTGTCAACTGGGCCCGAACCTCTGGCTGCTCACCC
TCTCACCCCTTGAGACGGGGTACCTTATTTTTGTGCGCACATGTCTCAAT
AGGTGTCTGCCTCATGTGTGGGGGCCACCACCCCTGGAGGTGGCAGTGCC
ACCGCGACTGCCTTGGAACCTCTGCTCTCCCCGCCTTGGCTATCTGTGTG
CTCCCTCCCCTCCTACCTCAACGCAGTTGTTCTGCGCTCCTCCGTAGCCA
CCTTCCTCCTGCTGCCTTCGAACCTCTGCTCTCCCCGCCTTGGCTACTCT
ATCTGTGTGCCCCCTCCCCTCCTCACCGCAGTTGTTCCGCATTCCTCCGT
AGCCACCCCCTCCCTCGGGCTCCTCTTCGCCGTCCTCCCGCAGGGGCGAT
GTCGACGCTGCAGTCGCTGCCGTCAGGGACAACCGCTCCTTCCGTGCCGT
CGCCAAGGCTCAGCTTGCGGCGCCTCTACCCACGGCCAGAGACGCCGGGC
CACGCCCCGCGGGGTCATCCTCGCGGGGGGGAGCGGGAGTGGCACGGCTA
CGAGCAGCAGCAGCAGTGACCAATGCAGCCGCCGCCCCCGCCTCAACCGC
GTGGAAGCTGCGGGGACGGCCACCCCCCCAACCGTATGACCTGCCTCCGG
CACTGGGTCAGCCGCCGCCGCCGCCGCCGCCGCGACCACAGGGTGTCGTA
AAGATGCAGAGGGCGTCTACCACAGCTGCTGCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig105:75327..78459+

>mRNA_S-ischiensis_contig105.1826.1 ID=mRNA_S-ischiensis_contig105.1826.1|Name=mRNA_S-ischiensis_contig105.1826.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2088bp|location=Sequence derived from alignment at S-ischiensis_contig105:75327..78459+ (Schizocladia ischiensis KU_0333)
ATGTCCAACGATTCAAATCAGCGAGCGGGCGGGATCGCAGCGGGGCTGCG
GGGAGGGGGAAGAGCGCGGCCACCGCGGCCGCCGCCATCGCCAATGAAGT
GGACTGGGCGTGAGATGTCCAACGATTCAAATCAGCGAGCGGGCGGGATC
GCAGCGGGGCTGCGGGGAGGGGGAAGAGCGCGGCCACCGCGGCCGCCGCC
ATCGCCAATGAAGTGGACTGGGCGTGAGGATGACATGCTTGCCGACGCCC
TTAGTCAGTGCAAGGGGAAGAGTTGGGCGGACGTGGCACGAGTGATGGGC
TCGGGGTTCACGGAGCAGCAAGTTGTGAGCCGCTGGAACAAGCTGGCCAA
GGTGCTGGCGCATAAGGAACCCTGGAGCCCGGAGGATGACATGCTTGCCG
ACGCCCTTAGTCAGTGCAAGGGGAAGAGTTGGGCGGACGTGGCACGAGTG
ATGGGCTCGGGGTTCACGGAGCAGCAAGTTGTGAGCCGCTGGAACAAGCT
GGCCAAGGTGCTGGCGCATAAGGAACCCTGGAGCCCGGAGGAGGACCAGC
GGATCATACAGATGGTAAGCCATTTGGGTCCTATGAAGTGGGGCGCCATC
TCTTACCACCTTCCCGGGCGCGTCGGCAAGCAGTGCCGGGAAAGGAGGAC
CAGCGGATCATACAGATGGTAAGCCATTTGGGTCCTATGAAGTGGGGCGC
CATCTCTTACCACCTTCCCGGGCGCGTCGGCAAGCAGTGCCGGGAAAGGT
GGCACAACCACCTCAACCCCGACATATCAAGGGGGCCTTGGACCGAAGAT
GAGGTGGCACAACCACCTCAACCCCGACATATCAAGGGGGCCTTGGACCG
AAGATGAGGACCGCACCATCATCATGGCACAGGCCCGGTTCGGCAACAAG
TGGGCCGAGATGGCCAAACTGCTGCCGGGGAGGACCGCACCATCATCATG
GCACAGGCCCGGTTCGGCAACAAGTGGGCCGAGATGGCCAAACTGCTGCC
GGGGAGGACGGACAACGCCATCAAGAACCGGTGGAACTCCAGCATCAAGA
AGAAGCTGCAGGTGTACCTGGAGACGAAATATGGGTCCTCATTTGCCACC
ACCAAGGGCAAACCCAAAGGCAGGGGCAGCGGCGGCGGCCGCGGTGGCGG
CAAGGACGACGACTGTGGCGGGGCGCATTGCCCGGCAGACGCCCGTTTCG
ATCTACGGACGGACAACGCCATCAAGAACCGGTGGAACTCCAGCATCAAG
AAGAAGCTGCAGGTGTACCTGGAGACGAAATATGGGTCCTCATTTGCCAC
CACCAAGGGCAAACCCAAAGGCAGGGGCAGCGGCGGCGGCCGCGGTGGCG
GCAAGGACGACGACTGTGGCGGGGCGCATTGCCCGGCAGACGCCCGTTTC
GATCTACGGGGCGATGTCGACGCTGCAGTCGCTGCCGTCAGGGACAACCG
CTCCTTCCGTGCCGTCGCCAAGGCTCAGCTTGCGGCGCCTCTACCCACGG
CCAGAGACGCCGGGCCACGCCCCGCGGGGTCATCCTCGCGGGGGGGAGCG
GGAGTGGCACGGCTACGAGCAGCAGCAGCAGTGACCAATGCAGCCGCCGC
CCCCGCCTCAACCGCGTGGAAGCTGCGGGGACGGCCACCCCCCCAACCGT
ATGACCTGCCTCCGGCACTGGGTCAGCCGCCGCCGCCGCCGCCGCCGCGA
CCACAGGGTGTCGTAAAGATGCAGAGGGCGTCTACCACAGCTGCTGCGGG
GCGATGTCGACGCTGCAGTCGCTGCCGTCAGGGACAACCGCTCCTTCCGT
GCCGTCGCCAAGGCTCAGCTTGCGGCGCCTCTACCCACGGCCAGAGACGC
CGGGCCACGCCCCGCGGGGTCATCCTCGCGGGGGGGAGCGGGAGTGGCAC
GGCTACGAGCAGCAGCAGCAGTGACCAATGCAGCCGCCGCCCCCGCCTCA
ACCGCGTGGAAGCTGCGGGGACGGCCACCCCCCCAACCGTATGACCTGCC
TCCGGCACTGGGTCAGCCGCCGCCGCCGCCGCCGCCGCGACCACAGGGTG
TCGTAAAGATGCAGAGGGCGTCTACCACAGCTGCTGCG
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