mRNA_S-ischiensis_contig105.1823.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig105.1823.1
Unique NamemRNA_S-ischiensis_contig105.1823.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig105.1823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig105contigS-ischiensis_contig105:61562..62119 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size558
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig105.1823.1prot_S-ischiensis_contig105.1823.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig105 61731..62045 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815563.6996675-UTR-S-ischiensis_contig105:61561..617301622815563.6996675-UTR-S-ischiensis_contig105:61561..61730Schizocladia ischiensis KU_0333UTRS-ischiensis_contig105 61562..61730 +
1695739772.603586-UTR-S-ischiensis_contig105:61561..617301695739772.603586-UTR-S-ischiensis_contig105:61561..61730Schizocladia ischiensis KU_0333UTRS-ischiensis_contig105 61562..61730 +
1622815563.7211545-UTR-S-ischiensis_contig105:62045..621191622815563.7211545-UTR-S-ischiensis_contig105:62045..62119Schizocladia ischiensis KU_0333UTRS-ischiensis_contig105 62046..62119 +
1695739772.6207757-UTR-S-ischiensis_contig105:62045..621191695739772.6207757-UTR-S-ischiensis_contig105:62045..62119Schizocladia ischiensis KU_0333UTRS-ischiensis_contig105 62046..62119 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815563.7118568-CDS-S-ischiensis_contig105:61730..620451622815563.7118568-CDS-S-ischiensis_contig105:61730..62045Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 61731..62045 +
1695739772.6122026-CDS-S-ischiensis_contig105:61730..620451695739772.6122026-CDS-S-ischiensis_contig105:61730..62045Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 61731..62045 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig105.1823.1

>prot_S-ischiensis_contig105.1823.1 ID=prot_S-ischiensis_contig105.1823.1|Name=mRNA_S-ischiensis_contig105.1823.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=105bp
MARPTGRASKYPKLPVLSASRGQVHGKTGDLPPDPWPPQGGIHFVRVMMP
HHGGGYSPLLYMQARSPPNCHYRTSEPACPGRCPLALKYSACIALLSYDS
TESG*
back to top

mRNA from alignment at S-ischiensis_contig105:61562..62119+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig105.1823.1 ID=mRNA_S-ischiensis_contig105.1823.1|Name=mRNA_S-ischiensis_contig105.1823.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=558bp|location=Sequence derived from alignment at S-ischiensis_contig105:61562..62119+ (Schizocladia ischiensis KU_0333)
GCAGAATGTGTTGGAAATTATATAGGCTGTCTTGAGATCACCCCAACATG
ACCTATAGATGCATTGCCGCGAGCCACGTGGGGGCGCTAAAAACGTACTC
GACATACGCCTCATGCTTGACCCCACTGTGTACGGCTGTATAAACAGTTG
AACTCCCCTGTGCAACCACATGGCACGCCCCACTGGCAGAGCTTCGAAGT
ATCCAAAGTTGCCAGTGCTCAGTGCAAGTCGTGGACAGGTCCACGGCAAA
ACAGGGGACCTCCCTCCGGACCCGTGGCCTCCCCAGGGCGGGATCCACTT
TGTCCGAGTCATGATGCCACACCATGGCGGTGGGTATAGCCCTCTATTGT
ACATGCAGGCCCGTTCGCCGCCAAACTGTCACTATCGTACCAGTGAGCCT
GCCTGCCCGGGGCGTTGCCCGCTGGCGTTAAAATACAGTGCGTGCATAGC
ACTGCTATCGTATGATAGCACTGAAAGTGGCTGAGCCGGTCAGTGGCCCA
CATGACCTAGCCGGCCCGGTGTGCACTGGCTCTCTCTTTCTCTCTCTATC
TCCCTCCC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig105:61562..62119+

>mRNA_S-ischiensis_contig105.1823.1 ID=mRNA_S-ischiensis_contig105.1823.1|Name=mRNA_S-ischiensis_contig105.1823.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=630bp|location=Sequence derived from alignment at S-ischiensis_contig105:61562..62119+ (Schizocladia ischiensis KU_0333)
ATGGCACGCCCCACTGGCAGAGCTTCGAAGTATCCAAAGTTGCCAGTGCT
CAGTGCAAGTCGTGGACAGGTCCACGGCAAAACAGGGGACCTCCCTCCGG
ACCCGTGGCCTCCCCAGGGCGGGATCCACTTTGTCCGAGTCATGATGCCA
CACCATGGCGGTGGGTATAGCCCTCTATTGTACATGCAGGCCCGTTCGCC
GCCAAACTGTCACTATCGTACCAGTGAGCCTGCCTGCCCGGGGCGTTGCC
CGCTGGCGTTAAAATACAGTGCGTGCATAGCACTGCTATCGTATGATAGC
ACTGAAAGTGGCTGAATGGCACGCCCCACTGGCAGAGCTTCGAAGTATCC
AAAGTTGCCAGTGCTCAGTGCAAGTCGTGGACAGGTCCACGGCAAAACAG
GGGACCTCCCTCCGGACCCGTGGCCTCCCCAGGGCGGGATCCACTTTGTC
CGAGTCATGATGCCACACCATGGCGGTGGGTATAGCCCTCTATTGTACAT
GCAGGCCCGTTCGCCGCCAAACTGTCACTATCGTACCAGTGAGCCTGCCT
GCCCGGGGCGTTGCCCGCTGGCGTTAAAATACAGTGCGTGCATAGCACTG
CTATCGTATGATAGCACTGAAAGTGGCTGA
back to top