mRNA_S-ischiensis_contig104.1812.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig104.1812.1
Unique NamemRNA_S-ischiensis_contig104.1812.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig104.1812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig104contigS-ischiensis_contig104:264552..266715 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size536
Cds size519
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig104.1812.1prot_S-ischiensis_contig104.1812.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig104 264567..266715 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815560.1015158-UTR-S-ischiensis_contig104:264551..2645661622815560.1015158-UTR-S-ischiensis_contig104:264551..264566Schizocladia ischiensis KU_0333UTRS-ischiensis_contig104 264552..264566 +
1695739770.1314585-UTR-S-ischiensis_contig104:264551..2645661695739770.1314585-UTR-S-ischiensis_contig104:264551..264566Schizocladia ischiensis KU_0333UTRS-ischiensis_contig104 264552..264566 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815560.115217-CDS-S-ischiensis_contig104:264566..2647791622815560.115217-CDS-S-ischiensis_contig104:264566..264779Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 264567..264779 +
1695739770.140216-CDS-S-ischiensis_contig104:264566..2647791695739770.140216-CDS-S-ischiensis_contig104:264566..264779Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 264567..264779 +
1622815560.1263282-CDS-S-ischiensis_contig104:266409..2667151622815560.1263282-CDS-S-ischiensis_contig104:266409..266715Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 266410..266715 +
1695739770.1488655-CDS-S-ischiensis_contig104:266409..2667151695739770.1488655-CDS-S-ischiensis_contig104:266409..266715Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 266410..266715 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig104.1812.1

>prot_S-ischiensis_contig104.1812.1 ID=prot_S-ischiensis_contig104.1812.1|Name=mRNA_S-ischiensis_contig104.1812.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=173bp
MPAGEEGHGGAGNGSVEALHQLEYTEDRDLDRPDTGENTDANSAAGDHLS
FPDTLRATVADERKKSNLDMGEALEEPGQPASPRCPSAPAPAHAPPSSSP
SAASAAAAAAAATSSASSSPATSAPSSSMSAIPAPPEGLAPTPPGETLAT
HPPGVPGGRVQRGGGGGGSGAGM
back to top

mRNA from alignment at S-ischiensis_contig104:264552..266715+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig104.1812.1 ID=mRNA_S-ischiensis_contig104.1812.1|Name=mRNA_S-ischiensis_contig104.1812.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2164bp|location=Sequence derived from alignment at S-ischiensis_contig104:264552..266715+ (Schizocladia ischiensis KU_0333)
GGTAGCGCGTCCACTATGCCAGCTGGTGAAGAGGGGCATGGTGGGGCGGG
GAATGGGAGTGTGGAGGCGCTCCACCAGCTAGAATACACGGAGGATCGTG
ACTTGGACCGGCCTGACACGGGAGAGAATACGGATGCCAATTCTGCGGCG
GGTGACCATCTGTCCTTTCCTGATACCCTCAGGGCGACGGTTGCAGACGA
GCGCAAGAAATCCAACTTGGACATGGGAGTGAGTGGCCGATCCAGACGCG
CGTGGGCCGTCCTCTGTTAGCGGTTTATTGGGTTGGGATGCCACCGAGGA
CGACGCACGCGGTGGCATCCAGAGGTCATGCGAGCACCGTGGTTCTCTGC
GCGGCTGGAGAGCACTAGTAGGACGCTAGAAGGATACCAGAATTAAGGCG
GGGTCCGTCAAGGGGCGATGCACCTTGCGTGAATTTTTGTGCAGCGTTGC
AGGCATGGCCGGTCCAGTTCTCGGTCGACTGCGTAGGTCGGTCCGGCTCC
TAGCAACGAACACCCCAGTACGTCCTCCTTGTGTGCTTAATTCATTGTGG
ACATATATTTCGGGACCTGTGGCATTGTCAGGCATGGGTGCTTTCCCTGG
CGAGTACACTACGCGACAAGAAACTCTCACAGTGGGATACGCCTTATTTC
CAACCGACCCAGCCAGTCGCAGAGTGTTTCGTACGAAGGTGTTTCTTATT
GCGCGGCGCCCGAAAGCCTTGGCGCACGCCTTGCCAGACGGTCCGGAACT
TAAATTCGCAGCGAATGTGCCCCACGACAGTGCTCGGGACTCGAGGTAGG
CTGGCGTGCTGAGCAATAGGCTCTCGAGGATGTCGCACGGCCCCGACAGA
ATCCCCCCACACATTGGTCTTCAGCAAGGACTCTGGGGATTAGAATCTGC
CTCCGTAGGAAACGCATTGTGCCCTTGGGCCCGAAACTCGCCCATGGCCT
CGGCTAGGCCCTGCTCGCGACGGTCTCGAGGCTCCAGACGACCCCGGGAG
GCCTCGGCGCTGTTAATGAGCGTTTCATAAACCGCCGGCGGTTTGAAGCC
TTCGGCGTTTCTTAAGCTTGGCCCGATCCAAAGGCTTCGTTTCCTAAAGA
TTAGGTTCTTGTCAGGTGTAGTGTACTTCAAAGGTCTCAACAAGCGAAGT
GAAAAGTGACTTACATTGGTGCCGGTGTTCTGGTCTGAGCGGTTTTCCGT
TCGAGGCGTCCTCGTTCTGACACAGGATGTTGCCTTGCGGCATTGCCGTT
TCTGCCATTGTTGCCCGCGCCAGTAGCCACCGATCAGGTCAGCCTGGGTG
CGGCCAAAACACCTCCTGGCCCCGAAGCACAAATGAAAGATGTGAAATCC
GCTCCAATCCCAGCACCACCTGCAAGGCAGCAAAAACGCCTTGTTTTCAC
AGCTGCAGCGACTACAAGTAGAGTAGAGGGTAGTTAGCCACTCACAAACG
GTAGCGAACCCTCTGCGCCACTTGTACTGTACTGTAGTACTACGAGTACG
AGGTAGTGGCAGGTCTGGCTGGACTGGGTGTAAAGCTTACTTGAGTACAT
GACGGAGCTCTTTTTGATTATCACCTCCCGGTAGACCTGGCATGGCATAC
TTTGAAAGTTATGTGCTCCGTCTCGATCGAGGCGCGTGTTCAATGGTCCC
GGGACTACAGCAAGCACAACGTGAGTACGCATATTATATATATATATATA
TGTGGAACGGCACTGCATTGCACCCACGCTGGGCAGTACCTTAGGTGGTT
ACATGGCTGTAGCGGAGGCAGTTTAGCTTGCATGCCTGTTTTCTTCGCGG
CTTTTCACTCTCCCCTCCCTCCTCGCCCTCCTCCGTATCCTCCTCCTCCT
CCCCACAGGAGGCCCTTGAAGAGCCGGGCCAGCCCGCGTCTCCTCGCTGT
CCTTCCGCCCCTGCCCCTGCCCACGCTCCTCCCTCCAGTTCTCCTTCCGC
TGCTAGTGCTGCTGCTGCTGCTGCTGCTGCCACTTCTTCCGCTTCTTCTT
CTCCTGCCACTTCTGCCCCTTCTTCATCTATGTCCGCCATCCCAGCTCCC
CCGGAGGGTCTGGCGCCCACCCCCCCCGGGGAGACGCTGGCAACACACCC
CCCAGGGGTACCAGGCGGACGTGTGCAGCGTGGCGGCGGCGGCGGCGGCA
GCGGCGCGGGGATG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig104:264552..266715+

>mRNA_S-ischiensis_contig104.1812.1 ID=mRNA_S-ischiensis_contig104.1812.1|Name=mRNA_S-ischiensis_contig104.1812.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1038bp|location=Sequence derived from alignment at S-ischiensis_contig104:264552..266715+ (Schizocladia ischiensis KU_0333)
ATGCCAGCTGGTGAAGAGGGGCATGGTGGGGCGGGGAATGGGAGTGTGGA
GGCGCTCCACCAGCTAGAATACACGGAGGATCGTGACTTGGACCGGCCTG
ACACGGGAGAGAATACGGATGCCAATTCTGCGGCGGGTGACCATCTGTCC
TTTCCTGATACCCTCAGGGCGACGGTTGCAGACGAGCGCAAGAAATCCAA
CTTGGACATGGGAATGCCAGCTGGTGAAGAGGGGCATGGTGGGGCGGGGA
ATGGGAGTGTGGAGGCGCTCCACCAGCTAGAATACACGGAGGATCGTGAC
TTGGACCGGCCTGACACGGGAGAGAATACGGATGCCAATTCTGCGGCGGG
TGACCATCTGTCCTTTCCTGATACCCTCAGGGCGACGGTTGCAGACGAGC
GCAAGAAATCCAACTTGGACATGGGAGAGGCCCTTGAAGAGCCGGGCCAG
CCCGCGTCTCCTCGCTGTCCTTCCGCCCCTGCCCCTGCCCACGCTCCTCC
CTCCAGTTCTCCTTCCGCTGCTAGTGCTGCTGCTGCTGCTGCTGCTGCCA
CTTCTTCCGCTTCTTCTTCTCCTGCCACTTCTGCCCCTTCTTCATCTATG
TCCGCCATCCCAGCTCCCCCGGAGGGTCTGGCGCCCACCCCCCCCGGGGA
GACGCTGGCAACACACCCCCCAGGGGTACCAGGCGGACGTGTGCAGCGTG
GCGGCGGCGGCGGCGGCAGCGGCGCGGGGATGGAGGCCCTTGAAGAGCCG
GGCCAGCCCGCGTCTCCTCGCTGTCCTTCCGCCCCTGCCCCTGCCCACGC
TCCTCCCTCCAGTTCTCCTTCCGCTGCTAGTGCTGCTGCTGCTGCTGCTG
CTGCCACTTCTTCCGCTTCTTCTTCTCCTGCCACTTCTGCCCCTTCTTCA
TCTATGTCCGCCATCCCAGCTCCCCCGGAGGGTCTGGCGCCCACCCCCCC
CGGGGAGACGCTGGCAACACACCCCCCAGGGGTACCAGGCGGACGTGTGC
AGCGTGGCGGCGGCGGCGGCGGCAGCGGCGCGGGGATG
back to top