mRNA_S-ischiensis_contig104.1811.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig104.1811.1
Unique NamemRNA_S-ischiensis_contig104.1811.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig104.1811.1 vs. uniprot
Match: A0A835YKE5_9STRA (Polymer-forming cytoskeletal-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKE5_9STRA)

HSP 1 Score: 107 bits (267), Expect = 2.180e-27
Identity = 54/102 (52.94%), Postives = 71/102 (69.61%), Query Frame = 1
Query:    4 GELSFERLLRIDGSFTGQIVSAGDLIMGPWGFLRGNIDGMGDLIIDGKWWATIPFLGMFFRVGNIVAESVRLRGRAVFHGDISCKSLCIDTTAAVGGTLNVH 309
            GELSF+RLLRIDG F+G+++S GDL++GP G L G++  MG++I+DGK             VG+I  + V LRGRA  HG+I+CKSLC+D T  V G LNVH
Sbjct:   43 GELSFDRLLRIDGRFSGRLLSQGDLVVGPTGVLTGDVVDMGEVIVDGK------------VVGDISVQKVSLRGRAEVHGNITCKSLCVDPTVIVVGGLNVH 132          
BLAST of mRNA_S-ischiensis_contig104.1811.1 vs. uniprot
Match: D7FI98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI98_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 2.210e-24
Identity = 55/110 (50.00%), Postives = 75/110 (68.18%), Query Frame = 1
Query:    1 RGELSFERLLRIDGSFTGQIVSAGDLIMGPWGFLRGNIDGMGDLIIDGKWWATIPFLGMFFRVGNIVAESVRLRGRAVFHGDISCKSLCIDTTAAVGGTLNVHAEAPAPL 330
            +GELSF+RLLR+DGSF GQ+VS GDL++G  G +RGNID + +++ DG    T+        VGNI AE VRLR  A+  G+I+C SL +D   ++ G LNVH +AP+ L
Sbjct:   14 QGELSFDRLLRVDGSFKGQLVSTGDLVIGATGVVRGNIDHLREVVSDG----TV--------VGNIQAERVRLRRSAIVIGNITCYSLSMDPDVSISGKLNVHIQAPSRL 111          
BLAST of mRNA_S-ischiensis_contig104.1811.1 vs. uniprot
Match: A0A6H5JN16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN16_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 7.570e-24
Identity = 57/118 (48.31%), Postives = 78/118 (66.10%), Query Frame = 1
Query:    1 RGELSFERLLRIDGSFTGQIVSAGDLIMGPWGFLRGNIDGMGDLIIDGKWWATIPFLGMFFRVGNIVAESVRLRGRAVFHGDISCKSLCIDTTAAVGGTLNVHAEAPAPLKRERLAEA 354
            +GELSF+RLLR+DGSF GQ+VS GDL++G  G +RGNI+ + +++ DG    T+        VGNI AE VRLR  A+  G+I+C SL +D   ++ G LNVH +AP+ L  E   EA
Sbjct:   82 KGELSFDRLLRVDGSFKGQLVSTGDLVIGATGIVRGNIEHLREVVSDG----TV--------VGNIQAERVRLRRSAIVIGNITCYSLSMDPDVSISGKLNVHIQAPSRLHLEGEEEA 187          
BLAST of mRNA_S-ischiensis_contig104.1811.1 vs. uniprot
Match: F0VZS1_9STRA (Uncharacterized protein AlNc14C3G400 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0VZS1_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 4.990e-19
Identity = 50/107 (46.73%), Postives = 66/107 (61.68%), Query Frame = 1
Query:    1 RGELSFERLLRIDGSFTGQIVSAGDLIMGPWGFLRGNIDGMGDLIIDGKWWATIPFLGMFFRVGNIVAESVRLRGRAVFHGDISCKSLCIDTTAAVGGTLNVHAEAP 321
            RGELSFERLLRI+G F G++VS G L++G  G L G++D M ++ I G         G    VGNI  E V LR +A   G+I+ KS+ +D    + GTLNVH +AP
Sbjct:  102 RGELSFERLLRIEGEFDGKLVSKGSLVVGTKGCLLGDVDSMKEVFITG---------GKI--VGNIAVEKVVLRDKASVFGNITAKSIKVDPDCVIVGTLNVHPQAP 197          
BLAST of mRNA_S-ischiensis_contig104.1811.1 vs. uniprot
Match: A0A7S3ZTD0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZTD0_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 3.010e-18
Identity = 48/106 (45.28%), Postives = 65/106 (61.32%), Query Frame = 1
Query:    4 GELSFERLLRIDGSFTGQIVSAGDLIMGPWGFLRGNIDGMGDLIIDGKWWATIPFLGMFFRVGNIVAESVRLRGRAVFHGDISCKSLCIDTTAAVGGTLNVHAEAP 321
            G L FERLLR+DG F G +VS GDLI+GP G L G++  M DL++ GK             +GNI  + + L G A  +GD++CK+L +D T  + GTLNV+  AP
Sbjct:  132 GTLRFERLLRLDGKFEGDLVSTGDLIVGPRGELVGDVRDMADLVVFGK------------VIGNINVDHLELCGAASIYGDVTCKTLLMDPTVVLVGTLNVNPFAP 225          
BLAST of mRNA_S-ischiensis_contig104.1811.1 vs. uniprot
Match: F0Y5F7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5F7_AURAN)

HSP 1 Score: 88.6 bits (218), Expect = 5.290e-18
Identity = 46/106 (43.40%), Postives = 65/106 (61.32%), Query Frame = 1
Query:    4 GELSFERLLRIDGSFTGQIVSAGDLIMGPWGFLRGNIDGMGDLIIDGKWWATIPFLGMFFRVGNIVAESVRLRGRAVFHGDISCKSLCIDTTAAVGGTLNVHAEAP 321
            G+L FERLLR+DG F G+++S GDLI+GP G L G++  M D+++ GK             +GNI  + V L G A  +GDI+CK L +D T  + G LN++  AP
Sbjct:  371 GKLRFERLLRLDGKFEGELISEGDLIVGPQGELVGDVKTMSDIVVFGK------------VIGNIAVDRVELCGSASIYGDITCKVLLMDPTVVLVGNLNINPFAP 464          
BLAST of mRNA_S-ischiensis_contig104.1811.1 vs. uniprot
Match: A0A6G0WCC1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WCC1_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 2.060e-16
Identity = 45/108 (41.67%), Postives = 66/108 (61.11%), Query Frame = 1
Query:    1 RGELSFERLLRIDGSFTGQIVSAGDLIMGPWGFLRGNIDGMGDLIIDGKWWATIPFLGMFFRV-GNIVAESVRLRGRAVFHGDISCKSLCIDTTAAVGGTLNVHAEAP 321
            +GELSFERLLRI+G F G+++S G L++G  G L GNIDGM ++++ G             RV GNI  + + LR +    G+++ KS+ ID    + GTLN++  AP
Sbjct:   88 KGELSFERLLRIEGEFEGKLISKGSLVVGHKGLLNGNIDGMKEVLVAGG------------RVLGNIQVDRLVLRDKGQIFGNVTAKSVRIDPDCILVGTLNINPHAP 183          
BLAST of mRNA_S-ischiensis_contig104.1811.1 vs. uniprot
Match: A0A5D6Y579_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y579_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.650e-14
Identity = 45/107 (42.06%), Postives = 64/107 (59.81%), Query Frame = 1
Query:    1 RGELSFERLLRIDGSFTGQIVSAGDLIMGPWGFLRGNIDGMGDLIIDGKWWATIPFLGMFFRVGNIVAESVRLRGRAVFHGDISCKSLCIDTTAAVGGTLNVHAEAP 321
            +GELSFERLLRI+G F G++VS G L++G  G L G ++ M ++ + G         G    VGNI  E + LR +A   G+I+ K++ ID    V G LNV+ +AP
Sbjct:   98 KGELSFERLLRIEGEFEGKLVSKGSLVVGAKGVLTGPVENMKEVHVTG---------GKI--VGNITVEKLVLRDKAQVFGNITAKTVKIDPDCVVVGRLNVNPQAP 193          
BLAST of mRNA_S-ischiensis_contig104.1811.1 vs. uniprot
Match: UPI001BD0D087 (polymer-forming cytoskeletal protein n=1 Tax=Chlamydiifrater volucris TaxID=2681470 RepID=UPI001BD0D087)

HSP 1 Score: 74.7 bits (182), Expect = 4.660e-14
Identity = 44/99 (44.44%), Postives = 60/99 (60.61%), Query Frame = 1
Query:    1 RGELSFERLLRIDGSFTGQIVSAGDLIMGPWGFLRGNIDGMGDLIIDGKWWATIPFLGMFFRVGNIVAES-VRLRGRAVFHGDISCKSLCIDTTAAVGG 294
            +GEL FE+LLRIDG+F G++VSAG +I+GP G ++ +ID +G+ II+G               GNI     V  RG AV  GDIS  SLC+D   ++ G
Sbjct:   95 KGELVFEKLLRIDGTFEGKLVSAGKIIVGPTGKVKADID-LGEAIIEGV------------VEGNITTRGKVEARGEAVIIGDISASSLCVDEGVSITG 180          
BLAST of mRNA_S-ischiensis_contig104.1811.1 vs. uniprot
Match: A0A6M2A6K4_9BACT (Uncharacterized protein n=1 Tax=Chlamydiae bacterium TaxID=2081524 RepID=A0A6M2A6K4_9BACT)

HSP 1 Score: 73.2 bits (178), Expect = 2.080e-13
Identity = 43/107 (40.19%), Postives = 62/107 (57.94%), Query Frame = 1
Query:    1 RGELSFERLLRIDGSFTGQIVSAGDLIMGPWGFLRGNIDGMGDLIIDGKWWATIPFLGMFFRVGNI-VAESVRLRGRAVFHGDISCKSLCIDTTAAVGGTLNVHAEA 318
            RGEL FERLLRIDG+F G ++S G +I+G  G ++ N++ + + +I+G+              GNI V E + LRG A  HGDI  K LC+D    + G + +  EA
Sbjct:  102 RGELKFERLLRIDGTFEGDLLSQGKVIVGSKGKVKANLN-LREAVIEGE------------VEGNITVQEKLELRGEASIHGDIQAKFLCVDEGVRLNGQVLISGEA 195          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig104.1811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YKE5_9STRA2.180e-2752.94Polymer-forming cytoskeletal-domain-containing pro... [more]
D7FI98_ECTSI2.210e-2450.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JN16_9PHAE7.570e-2448.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
F0VZS1_9STRA4.990e-1946.73Uncharacterized protein AlNc14C3G400 n=1 Tax=Albug... [more]
A0A7S3ZTD0_9STRA3.010e-1845.28Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0Y5F7_AURAN5.290e-1843.40Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A6G0WCC1_9STRA2.060e-1641.67Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A5D6Y579_9STRA1.650e-1442.06Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
UPI001BD0D0874.660e-1444.44polymer-forming cytoskeletal protein n=1 Tax=Chlam... [more]
A0A6M2A6K4_9BACT2.080e-1340.19Uncharacterized protein n=1 Tax=Chlamydiae bacteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig104contigS-ischiensis_contig104:260825..261479 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.4
Seed ortholog evalue4e-20
Seed eggNOG ortholog2880.D7FI98
EggNOG free text desc.Polymer-forming cytoskeletal
EggNOG OGs2RXV0@2759,COG1664@1
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF583
Ec32 orthologEc-11_001120.1
Exons2
Model size372
Cds size372
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815562.2016287-CDS-S-ischiensis_contig104:260824..2610101622815562.2016287-CDS-S-ischiensis_contig104:260824..261010Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 260825..261010 -
1695739771.5847926-CDS-S-ischiensis_contig104:260824..2610101695739771.5847926-CDS-S-ischiensis_contig104:260824..261010Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 260825..261010 -
1622815562.2160594-CDS-S-ischiensis_contig104:261293..2614791622815562.2160594-CDS-S-ischiensis_contig104:261293..261479Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 261294..261479 -
1695739771.5986269-CDS-S-ischiensis_contig104:261293..2614791695739771.5986269-CDS-S-ischiensis_contig104:261293..261479Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 261294..261479 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig104.1811.1prot_S-ischiensis_contig104.1811.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig104 260825..261479 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig104.1811.1

>prot_S-ischiensis_contig104.1811.1 ID=prot_S-ischiensis_contig104.1811.1|Name=mRNA_S-ischiensis_contig104.1811.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=124bp
RGELSFERLLRIDGSFTGQIVSAGDLIMGPWGFLRGNIDGMGDLIIDGKW
WATIPFLGMFFRVGNIVAESVRLRGRAVFHGDISCKSLCIDTTAAVGGTL
NVHAEAPAPLKRERLAEAAATAAP
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mRNA from alignment at S-ischiensis_contig104:260825..261479-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig104.1811.1 ID=mRNA_S-ischiensis_contig104.1811.1|Name=mRNA_S-ischiensis_contig104.1811.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=655bp|location=Sequence derived from alignment at S-ischiensis_contig104:260825..261479- (Schizocladia ischiensis KU_0333)
CGGGGCGAATTGTCATTCGAGAGGCTGCTGCGGATCGACGGGTCCTTCAC AGGACAAATTGTATCTGCAGGAGATCTCATCATGGGGCCGTGGGGGTTCC TCCGCGGAAACATAGACGGCATGGGAGACCTCATCATCGACGGCAAGTGG TGGGCAACAATCCCTTTTCTTGGAATGTTTTTCCGCGTTGCTCAAAGCAA GCATTTACAGTAGTCTTAAACTTCTCCTCGCACGCTTGGCCCTTGTCAAC TCTGCGCCTTGCTCGACGGTCGCTCTAGTGTATCCTTGCCTGCTCGATTT CTTTGTGTACCAACACAGAGACTGCGCACACCACACACAGTGTGTACACA CACGCGCAGACATAGGTACACGCACATACACTAACATAGCTCATCGAATA TGCACCGCACGTGCACACACACACACACATGCACGGCACCCACGCACGCA CGCAACCACCCACCCGCAGGTGGGAAACATTGTCGCTGAGAGCGTGCGGC TCCGGGGGCGGGCCGTTTTCCATGGCGACATCAGCTGCAAGTCACTGTGC ATAGACACCACCGCCGCAGTCGGGGGCACATTAAATGTCCACGCCGAGGC CCCCGCGCCGTTGAAACGCGAGCGCTTGGCCGAGGCAGCGGCCACCGCGG CGCCA
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Coding sequence (CDS) from alignment at S-ischiensis_contig104:260825..261479-

>mRNA_S-ischiensis_contig104.1811.1 ID=mRNA_S-ischiensis_contig104.1811.1|Name=mRNA_S-ischiensis_contig104.1811.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=744bp|location=Sequence derived from alignment at S-ischiensis_contig104:260825..261479- (Schizocladia ischiensis KU_0333)
CGGGGCGAATTGTCATTCGAGAGGCTGCTGCGGATCGACGGGTCCTTCAC
AGGACAAATTGTATCTGCAGGAGATCTCATCATGGGGCCGTGGGGGTTCC
TCCGCGGAAACATAGACGGCATGGGAGACCTCATCATCGACGGCAAGTGG
TGGGCAACAATCCCTTTTCTTGGAATGTTTTTCCGCCGGGGCGAATTGTC
ATTCGAGAGGCTGCTGCGGATCGACGGGTCCTTCACAGGACAAATTGTAT
CTGCAGGAGATCTCATCATGGGGCCGTGGGGGTTCCTCCGCGGAAACATA
GACGGCATGGGAGACCTCATCATCGACGGCAAGTGGTGGGCAACAATCCC
TTTTCTTGGAATGTTTTTCCGCGTGGGAAACATTGTCGCTGAGAGCGTGC
GGCTCCGGGGGCGGGCCGTTTTCCATGGCGACATCAGCTGCAAGTCACTG
TGCATAGACACCACCGCCGCAGTCGGGGGCACATTAAATGTCCACGCCGA
GGCCCCCGCGCCGTTGAAACGCGAGCGCTTGGCCGAGGCAGCGGCCACCG
CGGCGCCAGTGGGAAACATTGTCGCTGAGAGCGTGCGGCTCCGGGGGCGG
GCCGTTTTCCATGGCGACATCAGCTGCAAGTCACTGTGCATAGACACCAC
CGCCGCAGTCGGGGGCACATTAAATGTCCACGCCGAGGCCCCCGCGCCGT
TGAAACGCGAGCGCTTGGCCGAGGCAGCGGCCACCGCGGCGCCA
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