mRNA_S-ischiensis_contig104.1811.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig104.1811.1 vs. uniprot
Match: A0A835YKE5_9STRA (Polymer-forming cytoskeletal-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKE5_9STRA) HSP 1 Score: 107 bits (267), Expect = 2.180e-27 Identity = 54/102 (52.94%), Postives = 71/102 (69.61%), Query Frame = 1
Query: 4 GELSFERLLRIDGSFTGQIVSAGDLIMGPWGFLRGNIDGMGDLIIDGKWWATIPFLGMFFRVGNIVAESVRLRGRAVFHGDISCKSLCIDTTAAVGGTLNVH 309
GELSF+RLLRIDG F+G+++S GDL++GP G L G++ MG++I+DGK VG+I + V LRGRA HG+I+CKSLC+D T V G LNVH
Sbjct: 43 GELSFDRLLRIDGRFSGRLLSQGDLVVGPTGVLTGDVVDMGEVIVDGK------------VVGDISVQKVSLRGRAEVHGNITCKSLCVDPTVIVVGGLNVH 132
BLAST of mRNA_S-ischiensis_contig104.1811.1 vs. uniprot
Match: D7FI98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI98_ECTSI) HSP 1 Score: 101 bits (251), Expect = 2.210e-24 Identity = 55/110 (50.00%), Postives = 75/110 (68.18%), Query Frame = 1
Query: 1 RGELSFERLLRIDGSFTGQIVSAGDLIMGPWGFLRGNIDGMGDLIIDGKWWATIPFLGMFFRVGNIVAESVRLRGRAVFHGDISCKSLCIDTTAAVGGTLNVHAEAPAPL 330
+GELSF+RLLR+DGSF GQ+VS GDL++G G +RGNID + +++ DG T+ VGNI AE VRLR A+ G+I+C SL +D ++ G LNVH +AP+ L
Sbjct: 14 QGELSFDRLLRVDGSFKGQLVSTGDLVIGATGVVRGNIDHLREVVSDG----TV--------VGNIQAERVRLRRSAIVIGNITCYSLSMDPDVSISGKLNVHIQAPSRL 111
BLAST of mRNA_S-ischiensis_contig104.1811.1 vs. uniprot
Match: A0A6H5JN16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN16_9PHAE) HSP 1 Score: 101 bits (252), Expect = 7.570e-24 Identity = 57/118 (48.31%), Postives = 78/118 (66.10%), Query Frame = 1
Query: 1 RGELSFERLLRIDGSFTGQIVSAGDLIMGPWGFLRGNIDGMGDLIIDGKWWATIPFLGMFFRVGNIVAESVRLRGRAVFHGDISCKSLCIDTTAAVGGTLNVHAEAPAPLKRERLAEA 354
+GELSF+RLLR+DGSF GQ+VS GDL++G G +RGNI+ + +++ DG T+ VGNI AE VRLR A+ G+I+C SL +D ++ G LNVH +AP+ L E EA
Sbjct: 82 KGELSFDRLLRVDGSFKGQLVSTGDLVIGATGIVRGNIEHLREVVSDG----TV--------VGNIQAERVRLRRSAIVIGNITCYSLSMDPDVSISGKLNVHIQAPSRLHLEGEEEA 187
BLAST of mRNA_S-ischiensis_contig104.1811.1 vs. uniprot
Match: F0VZS1_9STRA (Uncharacterized protein AlNc14C3G400 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0VZS1_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 4.990e-19 Identity = 50/107 (46.73%), Postives = 66/107 (61.68%), Query Frame = 1
Query: 1 RGELSFERLLRIDGSFTGQIVSAGDLIMGPWGFLRGNIDGMGDLIIDGKWWATIPFLGMFFRVGNIVAESVRLRGRAVFHGDISCKSLCIDTTAAVGGTLNVHAEAP 321
RGELSFERLLRI+G F G++VS G L++G G L G++D M ++ I G G VGNI E V LR +A G+I+ KS+ +D + GTLNVH +AP
Sbjct: 102 RGELSFERLLRIEGEFDGKLVSKGSLVVGTKGCLLGDVDSMKEVFITG---------GKI--VGNIAVEKVVLRDKASVFGNITAKSIKVDPDCVIVGTLNVHPQAP 197
BLAST of mRNA_S-ischiensis_contig104.1811.1 vs. uniprot
Match: A0A7S3ZTD0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZTD0_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 3.010e-18 Identity = 48/106 (45.28%), Postives = 65/106 (61.32%), Query Frame = 1
Query: 4 GELSFERLLRIDGSFTGQIVSAGDLIMGPWGFLRGNIDGMGDLIIDGKWWATIPFLGMFFRVGNIVAESVRLRGRAVFHGDISCKSLCIDTTAAVGGTLNVHAEAP 321
G L FERLLR+DG F G +VS GDLI+GP G L G++ M DL++ GK +GNI + + L G A +GD++CK+L +D T + GTLNV+ AP
Sbjct: 132 GTLRFERLLRLDGKFEGDLVSTGDLIVGPRGELVGDVRDMADLVVFGK------------VIGNINVDHLELCGAASIYGDVTCKTLLMDPTVVLVGTLNVNPFAP 225
BLAST of mRNA_S-ischiensis_contig104.1811.1 vs. uniprot
Match: F0Y5F7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5F7_AURAN) HSP 1 Score: 88.6 bits (218), Expect = 5.290e-18 Identity = 46/106 (43.40%), Postives = 65/106 (61.32%), Query Frame = 1
Query: 4 GELSFERLLRIDGSFTGQIVSAGDLIMGPWGFLRGNIDGMGDLIIDGKWWATIPFLGMFFRVGNIVAESVRLRGRAVFHGDISCKSLCIDTTAAVGGTLNVHAEAP 321
G+L FERLLR+DG F G+++S GDLI+GP G L G++ M D+++ GK +GNI + V L G A +GDI+CK L +D T + G LN++ AP
Sbjct: 371 GKLRFERLLRLDGKFEGELISEGDLIVGPQGELVGDVKTMSDIVVFGK------------VIGNIAVDRVELCGSASIYGDITCKVLLMDPTVVLVGNLNINPFAP 464
BLAST of mRNA_S-ischiensis_contig104.1811.1 vs. uniprot
Match: A0A6G0WCC1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WCC1_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 2.060e-16 Identity = 45/108 (41.67%), Postives = 66/108 (61.11%), Query Frame = 1
Query: 1 RGELSFERLLRIDGSFTGQIVSAGDLIMGPWGFLRGNIDGMGDLIIDGKWWATIPFLGMFFRV-GNIVAESVRLRGRAVFHGDISCKSLCIDTTAAVGGTLNVHAEAP 321
+GELSFERLLRI+G F G+++S G L++G G L GNIDGM ++++ G RV GNI + + LR + G+++ KS+ ID + GTLN++ AP
Sbjct: 88 KGELSFERLLRIEGEFEGKLISKGSLVVGHKGLLNGNIDGMKEVLVAGG------------RVLGNIQVDRLVLRDKGQIFGNVTAKSVRIDPDCILVGTLNINPHAP 183
BLAST of mRNA_S-ischiensis_contig104.1811.1 vs. uniprot
Match: A0A5D6Y579_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y579_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 1.650e-14 Identity = 45/107 (42.06%), Postives = 64/107 (59.81%), Query Frame = 1
Query: 1 RGELSFERLLRIDGSFTGQIVSAGDLIMGPWGFLRGNIDGMGDLIIDGKWWATIPFLGMFFRVGNIVAESVRLRGRAVFHGDISCKSLCIDTTAAVGGTLNVHAEAP 321
+GELSFERLLRI+G F G++VS G L++G G L G ++ M ++ + G G VGNI E + LR +A G+I+ K++ ID V G LNV+ +AP
Sbjct: 98 KGELSFERLLRIEGEFEGKLVSKGSLVVGAKGVLTGPVENMKEVHVTG---------GKI--VGNITVEKLVLRDKAQVFGNITAKTVKIDPDCVVVGRLNVNPQAP 193
BLAST of mRNA_S-ischiensis_contig104.1811.1 vs. uniprot
Match: UPI001BD0D087 (polymer-forming cytoskeletal protein n=1 Tax=Chlamydiifrater volucris TaxID=2681470 RepID=UPI001BD0D087) HSP 1 Score: 74.7 bits (182), Expect = 4.660e-14 Identity = 44/99 (44.44%), Postives = 60/99 (60.61%), Query Frame = 1
Query: 1 RGELSFERLLRIDGSFTGQIVSAGDLIMGPWGFLRGNIDGMGDLIIDGKWWATIPFLGMFFRVGNIVAES-VRLRGRAVFHGDISCKSLCIDTTAAVGG 294
+GEL FE+LLRIDG+F G++VSAG +I+GP G ++ +ID +G+ II+G GNI V RG AV GDIS SLC+D ++ G
Sbjct: 95 KGELVFEKLLRIDGTFEGKLVSAGKIIVGPTGKVKADID-LGEAIIEGV------------VEGNITTRGKVEARGEAVIIGDISASSLCVDEGVSITG 180
BLAST of mRNA_S-ischiensis_contig104.1811.1 vs. uniprot
Match: A0A6M2A6K4_9BACT (Uncharacterized protein n=1 Tax=Chlamydiae bacterium TaxID=2081524 RepID=A0A6M2A6K4_9BACT) HSP 1 Score: 73.2 bits (178), Expect = 2.080e-13 Identity = 43/107 (40.19%), Postives = 62/107 (57.94%), Query Frame = 1
Query: 1 RGELSFERLLRIDGSFTGQIVSAGDLIMGPWGFLRGNIDGMGDLIIDGKWWATIPFLGMFFRVGNI-VAESVRLRGRAVFHGDISCKSLCIDTTAAVGGTLNVHAEA 318
RGEL FERLLRIDG+F G ++S G +I+G G ++ N++ + + +I+G+ GNI V E + LRG A HGDI K LC+D + G + + EA
Sbjct: 102 RGELKFERLLRIDGTFEGDLLSQGKVIVGSKGKVKANLN-LREAVIEGE------------VEGNITVQEKLELRGEASIHGDIQAKFLCVDEGVRLNGQVLISGEA 195 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig104.1811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig104.1811.1 >prot_S-ischiensis_contig104.1811.1 ID=prot_S-ischiensis_contig104.1811.1|Name=mRNA_S-ischiensis_contig104.1811.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=124bp RGELSFERLLRIDGSFTGQIVSAGDLIMGPWGFLRGNIDGMGDLIIDGKWback to top mRNA from alignment at S-ischiensis_contig104:260825..261479- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig104.1811.1 ID=mRNA_S-ischiensis_contig104.1811.1|Name=mRNA_S-ischiensis_contig104.1811.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=655bp|location=Sequence derived from alignment at S-ischiensis_contig104:260825..261479- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig104:260825..261479- >mRNA_S-ischiensis_contig104.1811.1 ID=mRNA_S-ischiensis_contig104.1811.1|Name=mRNA_S-ischiensis_contig104.1811.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=744bp|location=Sequence derived from alignment at S-ischiensis_contig104:260825..261479- (Schizocladia ischiensis KU_0333)back to top |