mRNA_S-ischiensis_contig104.1809.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig104.1809.1
Unique NamemRNA_S-ischiensis_contig104.1809.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig104.1809.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig104contigS-ischiensis_contig104:245309..246152 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size552
Cds size381
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig104.1809.1prot_S-ischiensis_contig104.1809.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig104 245309..245983 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815560.0362952-CDS-S-ischiensis_contig104:245308..2453941622815560.0362952-CDS-S-ischiensis_contig104:245308..245394Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 245309..245394 +
1695739770.101296-CDS-S-ischiensis_contig104:245308..2453941695739770.101296-CDS-S-ischiensis_contig104:245308..245394Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 245309..245394 +
1622815560.0521727-CDS-S-ischiensis_contig104:245688..2459831622815560.0521727-CDS-S-ischiensis_contig104:245688..245983Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 245689..245983 +
1695739770.1112669-CDS-S-ischiensis_contig104:245688..2459831695739770.1112669-CDS-S-ischiensis_contig104:245688..245983Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 245689..245983 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815560.0644736-UTR-S-ischiensis_contig104:245983..2461521622815560.0644736-UTR-S-ischiensis_contig104:245983..246152Schizocladia ischiensis KU_0333UTRS-ischiensis_contig104 245984..246152 +
1695739770.120796-UTR-S-ischiensis_contig104:245983..2461521695739770.120796-UTR-S-ischiensis_contig104:245983..246152Schizocladia ischiensis KU_0333UTRS-ischiensis_contig104 245984..246152 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig104.1809.1

>prot_S-ischiensis_contig104.1809.1 ID=prot_S-ischiensis_contig104.1809.1|Name=mRNA_S-ischiensis_contig104.1809.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=127bp
RVSSENQRSCAPRSFGRVRCLSCQAKLASPSRRGGNAAGTRCLADQASAA
LVSAALPVPGLETADQVGCFPALPSPSRGPWVSRTRGAPSQRAAAFASPL
IGTPDRSPPCAAVPPVARWPGQSQPC*
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mRNA from alignment at S-ischiensis_contig104:245309..246152+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig104.1809.1 ID=mRNA_S-ischiensis_contig104.1809.1|Name=mRNA_S-ischiensis_contig104.1809.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=844bp|location=Sequence derived from alignment at S-ischiensis_contig104:245309..246152+ (Schizocladia ischiensis KU_0333)
AGGGTCTCATCAGAAAATCAGAGGAGCTGCGCCCCGAGGTCTTTCGGAAG
GGTTCGTTGCCTTTCCTGCCAAGCAAAGCTTGCGAGGTCCGTCTCCGCTC
GCTCGATATGCTGTTGTGCCTGCTGAAGTTGTCGTCGAGGTTGCTGATGG
GAAATTGCGGGAGGCATAAGAGCGTCCGTTTGGCTCATTTGTGGGGGCGG
CGGCAGCAGCTCCTTGGGGCCTGTCGCTGCAAGAGCACCTCATCCTCGCC
GAACCGGCAGTATCTCTGACAACCGCGCGGCCTACTTCATACACGAAGCC
GGCCTTGAAACAAACAACTCTTGCCTGGCTGTTGCCTGGCCCGCTCGCTT
GCCCGCCGCCCCTTTCCACCGATCGTGCAGCCCCTCGCGAAGGGGTGGAA
ATGCCGCAGGAACCAGGTGTTTGGCAGACCAGGCAAGTGCTGCTCTGGTG
AGTGCAGCATTGCCCGTGCCGGGCCTTGAAACAGCAGACCAGGTGGGCTG
CTTCCCCGCCTTGCCATCCCCCTCGCGAGGTCCGTGGGTGTCCCGCACCC
GGGGCGCCCCATCCCAAAGAGCGGCAGCATTTGCTTCCCCCCTTATCGGC
ACCCCTGATCGCTCACCACCATGCGCCGCAGTGCCCCCCGTGGCCCGTTG
GCCTGGGCAGTCGCAGCCTTGCTAGCCGCACCGGCCGCGGGGTTTGCGGG
GGTCGGGGGGCATCAGGGGAAAGCGAGCCTCCCCGGGGCCCCCGGGGAAT
GTAGGACGCCACTGTGCCACACAGTGGCTGATACCTCCTCGAGGCTGGGC
CCCAACCCGGGCGTGGGGAGCCGATGGCGCGTCGAAATGGGCCT
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Coding sequence (CDS) from alignment at S-ischiensis_contig104:245309..246152+

>mRNA_S-ischiensis_contig104.1809.1 ID=mRNA_S-ischiensis_contig104.1809.1|Name=mRNA_S-ischiensis_contig104.1809.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=762bp|location=Sequence derived from alignment at S-ischiensis_contig104:245309..246152+ (Schizocladia ischiensis KU_0333)
AGGGTCTCATCAGAAAATCAGAGGAGCTGCGCCCCGAGGTCTTTCGGAAG
GGTTCGTTGCCTTTCCTGCCAAGCAAAGCTTGCGAGAGGGTCTCATCAGA
AAATCAGAGGAGCTGCGCCCCGAGGTCTTTCGGAAGGGTTCGTTGCCTTT
CCTGCCAAGCAAAGCTTGCGAGCCCCTCGCGAAGGGGTGGAAATGCCGCA
GGAACCAGGTGTTTGGCAGACCAGGCAAGTGCTGCTCTGGTGAGTGCAGC
ATTGCCCGTGCCGGGCCTTGAAACAGCAGACCAGGTGGGCTGCTTCCCCG
CCTTGCCATCCCCCTCGCGAGGTCCGTGGGTGTCCCGCACCCGGGGCGCC
CCATCCCAAAGAGCGGCAGCATTTGCTTCCCCCCTTATCGGCACCCCTGA
TCGCTCACCACCATGCGCCGCAGTGCCCCCCGTGGCCCGTTGGCCTGGGC
AGTCGCAGCCTTGCTAGCCCCTCGCGAAGGGGTGGAAATGCCGCAGGAAC
CAGGTGTTTGGCAGACCAGGCAAGTGCTGCTCTGGTGAGTGCAGCATTGC
CCGTGCCGGGCCTTGAAACAGCAGACCAGGTGGGCTGCTTCCCCGCCTTG
CCATCCCCCTCGCGAGGTCCGTGGGTGTCCCGCACCCGGGGCGCCCCATC
CCAAAGAGCGGCAGCATTTGCTTCCCCCCTTATCGGCACCCCTGATCGCT
CACCACCATGCGCCGCAGTGCCCCCCGTGGCCCGTTGGCCTGGGCAGTCG
CAGCCTTGCTAG
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