mRNA_S-ischiensis_contig104.1802.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig104.1802.1 vs. uniprot
Match: A0A6H5KJA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA8_9PHAE) HSP 1 Score: 197 bits (500), Expect = 2.840e-53 Identity = 103/246 (41.87%), Postives = 143/246 (58.13%), Query Frame = 1
Query: 1339 FGRMAYIYPVYPIGNMRTVTPKAT-AGEKR-------------------------------------------VFIVQGSIEAKRRRYDELLVCLADMCERGKDDFHLLTAGARGNLPDDLPT--CLQDKITMKKHLPFEEFYGEIKKGHFIVTAVARDVYHWSQATSSVPAALLLERPLVASETLLNVYPECLRDAPIHKMVANDDLCRNVEAAYDLTPEQYDQMELEIRDCKIHLWEESRSTLS 1938
F R +YP++P G++R PK AG+++ VF+VQG++++ RR Y EL CL MC G+D++ L+ GARG+LPDD+ C++ + T +HL + EFY I HF+VTA A Y + +ATS+VP ALLLERPLV S TLL+ YP CLR + +H MVANDDLC N++ AYDLT E+YD+MELE RDCK+ +W +R T++
Sbjct: 12 FRRPGVVYPIHPTGHLRLPRPKRPFAGQQQRWRRHLSGREXXXXXXXXXXXXXXXXXXXXXXXXXXXXREEDVVFVVQGNMQSHRRNYPELTRCLEAMCSTGRDNYQLVAVGARGDLPDDVRRMQCVEQRTTEWRHLEYPEFYANISAAHFVVTAAAGHDYEYDKATSTVPTALLLERPLVISSTLLDAYP-CLRKSRVHSMVANDDLCLNLQTAYDLTTEEYDEMELEARDCKLEMWRHARETVA 256
BLAST of mRNA_S-ischiensis_contig104.1802.1 vs. uniprot
Match: D8LSI3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI3_ECTSI) HSP 1 Score: 187 bits (475), Expect = 4.270e-51 Identity = 88/166 (53.01%), Postives = 118/166 (71.08%), Query Frame = 1
Query: 1447 IEAKRRRYDELLVCLADMCERGKDDFHLLTAGARGNLPDDLPT--CLQDKITMKKHLPFEEFYGEIKKGHFIVTAVARDVYHWSQATSSVPAALLLERPLVASETLLNVYPECLRDAPIHKMVANDDLCRNVEAAYDLTPEQYDQMELEIRDCKIHLWEESRSTLS 1938
+++ RR Y EL CL MC G+D++ L+ GARG+LPDD+ C++ + T +HL + EFY I GHF+VTA A Y + +ATS+VP ALLLERPLV S TLL+ YP CLR + +H MVANDDLC N++ AYDLT E+YD+MELE RDCK+ +W +R T++
Sbjct: 1 MQSHRRNYPELTRCLEAMCSTGRDNYQLVAVGARGDLPDDVSAMQCVEQRTTEWRHLEYPEFYANISAGHFVVTAAAGHGYEYDKATSTVPTALLLERPLVMSSTLLDAYP-CLRKSRVHSMVANDDLCVNLQTAYDLTREEYDEMELEARDCKLEMWRHARETVA 165
BLAST of mRNA_S-ischiensis_contig104.1802.1 vs. uniprot
Match: D8LSI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI2_ECTSI) HSP 1 Score: 189 bits (479), Expect = 3.540e-46 Identity = 123/332 (37.05%), Postives = 175/332 (52.71%), Query Frame = 1
Query: 166 ANGGMAYTAVQLITTTESPILYVDLHAR----GTSGHGGIPWFPGFT-TDGVHALMISGPLHRMMSLLEEHGIDVEEGMQAW----GDSASAATNYRQGYQLLDNYMVRVLGGEDAWNAPHGELAAQHLAVARQRLAKFDVVLRMECFDVDANLLTPHLN---PNSPLTDLLRTGRLELYHSEPYTTRLPAGEVGEAMLLQNEYDQDLFEFASRLIHSRNPSRKSYTCGRLGVQNLAQGLPFQGRTALVYNPQHYHMEVTAAYGCMLASLGFNTTTILSKPGGGYEELFACSDTVVVAEDPAALANMMPGARFDMSAVT--SFPDDAPAFME 1119
A GG A T LI T+S I ++DL + ++ PWF GF DGV A+ + P+ R++ L G+ +EEGM +W G A A+++YRQGYQ LDNY+VRVL G+ AW+ P G + L AR L KF+V+LR +C VD LL P+L P + + D R L E + L G+ G +L N +D L++FA +L+ SR+ + + Y CG Q +P GR A+VYN +H+ A + C+L SLGF+ T ++ +PG G+E L C D VV + +PG D AV S P+ A E
Sbjct: 33 AAGGAART---LIDGTDSNIYHLDLLVQQPYDASTTTAQPPWFDGFGGRDGVAAVTVGHPIQRILLHLRAEGVGLEEGM-SWPERGGKRADASSSYRQGYQQLDNYLVRVLAGKSAWDLPPGRVGKSELQAARIALGKFEVLLRADCLAVDLPLLQPYLAKAVPAAQVADAARETEDLLESGEAHY--LVFGKEGGKLLRDNRWDLQLWDFAHKLVESRSTTAEGYLCGS-SASARRQRMPGDGRRAVVYNSPSFHITGVAMFSCVLMSLGFDVTAVVKEPGAGFEHLLPCPDRVVALSEH--YLRDLPGEILDEEAVAALSLPESLTAEQE 355
BLAST of mRNA_S-ischiensis_contig104.1802.1 vs. uniprot
Match: A0A6H5KKJ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ1_9PHAE) HSP 1 Score: 185 bits (469), Expect = 3.380e-45 Identity = 129/353 (36.54%), Postives = 182/353 (51.56%), Query Frame = 1
Query: 166 ANGGMAYTAVQLITTTESPILYVDL------HARGTSGHGGIPWFPGFT-TDGVHALMISGPLHRMMSLLEEHGIDVEEGMQAW----GDSASAATNYRQGYQLLDNYMVRVLGGEDAWNAPHGELAAQHLAV----ARQRLAKFDVVLRMECFDVDANLLTPHLN---PNSPLTDLLRTGRLELYHSEPYTTRLPAGEVGEAMLLQNEYDQDLFEFASRLIHSRNPSRKSYTCGRLGVQNLAQGLPFQGRTALVYNPQHYHMEVTAAYGCMLASLGFNTTTILSKPGGGYEELFACSDTVVVAEDPAALANMMPGARFD--MSAVTSFPDDAPAFMEPKNWYLTKMMLEDVK 1164
A GG A T LI T+S I ++DL A T+ PWF GF DGV A+ I P+ R++ L G+ +EEGM +W G A A+++YRQGYQ LDNY+VRVL G+ AW+ P G + L V AR L KF+V+LR +C VD LL P+L P + + D R L E Y L G+ G +L N +D L++FA +L+ SR+ + + Y CG Q +P GR A+VYN +H+ A + C+L SLGF+ T ++ +PG G+E L C D VV + +PG D +A S P+ A E + + LE ++
Sbjct: 33 AVGGAART---LIDGTDSSIHHLDLLVQQPYDASPTTAQP--PWFDGFGGRDGVAAVTIGHPIQRILLHLRAEGVGLEEGM-SWPERGGKRADASSSYRQGYQQLDNYLVRVLAGKSAWDLPPGRVGKTELQVGIPAARIALGKFEVLLRADCLAVDLPLLQPYLAKAVPAAQVADAARETEDLLESGEAYY--LVFGKEGGKLLRDNRWDLQLWDFAHKLVESRSTTAEGYLCGS-STSARRQRMPGDGRRAVVYNSPSFHVTGVAMFSCVLMSLGFDVTAVVKEPGAGFEHLLPCPDRVVALSEH--YLRDLPGEILDEEAAAALSLPESLTAEQEEERLRQQALHLERLR 374 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig104.1802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig104.1802.1 >prot_S-ischiensis_contig104.1802.1 ID=prot_S-ischiensis_contig104.1802.1|Name=mRNA_S-ischiensis_contig104.1802.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=659bp MNAAEASARPCDEPRLRRRTRGSAAAAVGLGVVAACCVMRGAHAKANGGMback to top mRNA from alignment at S-ischiensis_contig104:151619..164093- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig104.1802.1 ID=mRNA_S-ischiensis_contig104.1802.1|Name=mRNA_S-ischiensis_contig104.1802.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=12475bp|location=Sequence derived from alignment at S-ischiensis_contig104:151619..164093- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig104:151619..164093- >mRNA_S-ischiensis_contig104.1802.1 ID=mRNA_S-ischiensis_contig104.1802.1|Name=mRNA_S-ischiensis_contig104.1802.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=3954bp|location=Sequence derived from alignment at S-ischiensis_contig104:151619..164093- (Schizocladia ischiensis KU_0333)back to top |