mRNA_S-ischiensis_contig104.1797.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig104.1797.1
Unique NamemRNA_S-ischiensis_contig104.1797.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig104.1797.1 vs. uniprot
Match: A0A2P6TR15_CHLSO (Sulfotransferase domain n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TR15_CHLSO)

HSP 1 Score: 53.1 bits (126), Expect = 4.300e-5
Identity = 35/94 (37.23%), Postives = 47/94 (50.00%), Query Frame = 1 
Query:  226 VHFVRDPVDIILSAYNYHKE--APEQWTMDPWAMRASYMYRPDGWFE-------GPEAEDISYAEALNALPVNMGLGVEARRCNKPINQMARAY 480
            VHFVR+P D+++SAY YH +  APE W   P + R   M       E       G E   +SY + L ALP   G+ +E  R  + +  MAR Y
Sbjct:  143 VHFVRNPWDVVVSAYWYHLQTPAPETWIDKPLSTRLGMMREAGVPPEQLAALGTGEEQAAMSYGDTLRALPDEAGVQLEFWRSAEGLYAMARQY 236
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BLAST of mRNA_S-ischiensis_contig104.1797.1 vs. uniprot
Match: A0A2P6VBQ0_9CHLO (Sulfotransferase domain n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VBQ0_9CHLO)

HSP 1 Score: 52.0 bits (123), Expect = 9.070e-5
Identity = 36/104 (34.62%), Postives = 49/104 (47.12%), Query Frame = 1 
Query:  202 PAKEGVRAVHFVRDPVDIILSAYNYH--KEAPEQWTMDPWAMRASYMYRPD---------GWFEGPEAEDISYAEALNALPVNMGLGVEARRCNKPINQMARAY 480
            P++  +  VHF+R+P DI++SAY YH  K+APE W    W      M +           G     +    SYAE L ALP   G+ +E  R    +  MAR Y
Sbjct:   69 PSRGALGVVHFLRNPWDIVVSAYWYHSQKKAPEGWLNGKWEDFFRLMGKTGVPLQRLADLGLGAVQQHAGQSYAEVLRALPDEQGVQLEFWRSAPAMYAMARQY 172
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig104.1797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2P6TR15_CHLSO4.300e-537.23Sulfotransferase domain n=1 Tax=Chlorella sorokini... [more]
A0A2P6VBQ0_9CHLO9.070e-534.62Sulfotransferase domain n=1 Tax=Micractinium condu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig104contigS-ischiensis_contig104:102549..105189 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size522
Cds size495
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig104.1797.1prot_S-ischiensis_contig104.1797.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig104 102549..105162 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815559.547611-CDS-S-ischiensis_contig104:102548..1027211622815559.547611-CDS-S-ischiensis_contig104:102548..102721Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 102549..102721 -
1695739769.8668723-CDS-S-ischiensis_contig104:102548..1027211695739769.8668723-CDS-S-ischiensis_contig104:102548..102721Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 102549..102721 -
1622815559.560972-CDS-S-ischiensis_contig104:103533..1036171622815559.560972-CDS-S-ischiensis_contig104:103533..103617Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 103534..103617 -
1695739769.876054-CDS-S-ischiensis_contig104:103533..1036171695739769.876054-CDS-S-ischiensis_contig104:103533..103617Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 103534..103617 -
1622815559.572713-CDS-S-ischiensis_contig104:104556..1046751622815559.572713-CDS-S-ischiensis_contig104:104556..104675Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 104557..104675 -
1695739769.884448-CDS-S-ischiensis_contig104:104556..1046751695739769.884448-CDS-S-ischiensis_contig104:104556..104675Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 104557..104675 -
1622815559.583972-CDS-S-ischiensis_contig104:105043..1051621622815559.583972-CDS-S-ischiensis_contig104:105043..105162Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 105044..105162 -
1695739769.8935857-CDS-S-ischiensis_contig104:105043..1051621695739769.8935857-CDS-S-ischiensis_contig104:105043..105162Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 105044..105162 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815559.598118-UTR-S-ischiensis_contig104:105162..1051891622815559.598118-UTR-S-ischiensis_contig104:105162..105189Schizocladia ischiensis KU_0333UTRS-ischiensis_contig104 105163..105189 -
1695739769.9020364-UTR-S-ischiensis_contig104:105162..1051891695739769.9020364-UTR-S-ischiensis_contig104:105162..105189Schizocladia ischiensis KU_0333UTRS-ischiensis_contig104 105163..105189 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig104.1797.1

>prot_S-ischiensis_contig104.1797.1 ID=prot_S-ischiensis_contig104.1797.1|Name=mRNA_S-ischiensis_contig104.1797.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=165bp
MANYCSTISEALGQPMEVEHDVRLFYDDEELRASLLEHTGGPASYACKKW
ASDGNTKTPAKEGVRAVHFVRDPVDIILSAYNYHKEAPEQWTMDPWAMRA
SYMYRPDGWFEGPEAEDISYAEALNALPVNMGLGVEARRCNKPINQMARA
YCSNHNDPNYIPLR*
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mRNA from alignment at S-ischiensis_contig104:102549..105189-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig104.1797.1 ID=mRNA_S-ischiensis_contig104.1797.1|Name=mRNA_S-ischiensis_contig104.1797.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2641bp|location=Sequence derived from alignment at S-ischiensis_contig104:102549..105189- (Schizocladia ischiensis KU_0333)
GTCTTCTCACACAGGTTGGTCAAGACCATGGCTAACTACTGCTCAACCAT
ATCGGAGGCCCTGGGGCAGCCTATGGAGGTGGAGCATGACGTACGGCTCT
TCTATGACGACGAGGAACTCAGGGCATCACTACTGGAGCACACGGGGTGA
GTGGGGGGTGTACAGTACAGCCTTGGGGGTTGCTACAACTTTGTCTCTTA
TCTCCTGGGCGCGCTGTACTGCCAGTAGCTACAGCCATTCGGCCACAATC
TAGAGATAGTTCGCATCCCCATTGTACTACGGTAGGGTGTGCACCGGCCA
GCCAAGACAACAAGCCAGACACGAGGGGGTTGGGGCATGCCAGACGTTGG
GGAAGCTGTGTCTAGGACTGTACTGCTGTGCAGTAGCAAGTCTAGCACTA
TGTACTGTACATACCAAGTACTGCACTTGCAGTAGGATATCCATTGCATC
TGCGTATCCCATCCTGATGCCTGACACACCAACCCCGTGTGCACTGTCAT
TGCCATGATAACAGCGGGCCCGCCAGCTATGCCTGCAAGAAGTGGGCCTC
TGATGGTAACACCAAGACCCCAGCAAAGGAGGGGGTGCGAGCGGTGCACT
TTGTCCGGGACCCAGTGGACATTATCCTTTCAGGTAATGCCATGTGCGGC
TACTTTGTTGTGTGGATACGTAAGCGGCGAGTGGGAAATAGAGGTGACCC
TACTTTTGCTGGTTCCGGCCCCCAACATGGAGGCCCGTCCTTCACCCGCC
TTCACTTGCAAGGCAAATAGGAAATGATGGGTGTGATATGTACTCGTACA
GTACTTCCACATCACATCAAAGAAGCCCTTCCTTCACCCGCCTGTACTTG
CAGGGCAAATAGAAACAGAAAACCAAGGGGAAAGGGGAAGCGGGTATCTT
GTGCCAGTAAGCGGGACACGCGGAATAGGCAACACTGACCGAAGCCGTGG
CATACTGAGAACGTTTGATAGCGAGCTCCCGCAACTACCACGTGCACGTG
GAGTGACCAGGAAAGCACGCGTCTATGGTAACCGCACGATGGTGTGGCCA
ACACCAGGAAGAATGACAATGCCCTACCCAACAGTGGTCACTGCACGTGT
ATGTTACGGGGCTTGTTCGCAAAGAGATGCGCTCCAAAGGACATGCCATG
TACAGTTGCGAAAACCATTTGCTGTACCTATACCAACATGTCAGATTTTC
CTACTGTTTTGTGCTGTACTTCCAAGTTTTTCCAAGCACCAACCTGTTGT
TGTGCACCCGGTGGAGCGCACTGCCACACCGTTGATTGGTCGCCGGCCAG
CCGAGGCCTCAGCCTGTGCCCGACCATGGCTAGCGGTTACAATTGTAGCT
CTTCTGTCTGCAGTCGCTGTTTGTCTGGCCTCTGACGGCTGGTGGCAACA
TCTCTTTTACATGTCTGGTCAATGATACAGTATCATGTGTGAGCCACGTT
AACGATATTTTGTGTGACCAGTAGAGCAATTCCAAGTATGATTATCTTAT
GTGAGCAACAATGCTATGCGGCCGCCGCCCCGCCCCACCTTGGAATGCTT
GGTGCCGATTGTCGATTGTCAGCGTACAACTACCACAAGGAGGCACCGGA
GCAGTGGACCATGGACCCCTGGGCAATGCGAGCCTCATACATGTACCGCC
CTGACGGTGAGTGTCAGTTGCATCCTCTGTACTGTAACACAGTAGTACAT
AGCATGCAGTGGACGTCAGCTGGCTTGCTGAGCTGGCATGTCTGCAGCTG
GCCGCAGCCCCGCAGCTTCAAAAAGCTTGAGGAAAGCTGCACCAGTTGAA
ATGGGATCCTCGCGGTGCCCCCGCGCTCGCGGCCCCTCATCACAACTGCA
TTCGACATCCCGAAGCCTGAAGTATGGATGCCCAGTTCCATAAGCACCAG
CAACCAGGAGGAAATGCCGCAACATGGCGCCCAGAAGGGACGACAAAAAG
CACCTGTGCTGTTGACTTGGGCTAATATAGACTTCAACCAAAGCTTTCAA
GGACAAACCGCCACTTTTGGGCCGGAAAACTGCTGTTTGCCCGGTAATTC
TGCGGCGTCAGAGTGAAAAAGGGTTTGTTGATGCCGTATTTCTGGGCCCA
ATGTGCCCCCAAAAGTTTGTGTATTCCGGCCAAAGAGATAGGTCATTTCG
GAGAGATTTTCACGGAGAACAGTTCATAGTATAACAGTGGTTACTATCTA
AACAGTAGTTGTACTTGTAGTGTACTGTAGTAGTATTTCATTGTGTTGTA
CTGTAGTGCTTGGGTACCCACATGTTTTGACAGGTGTACTACAGTAATCA
ATGGGCACAGGCAAGCCACGACTCCACCTCCCGCATGGAACACCGTTGGG
GAATCGGGAGATCCCCGAATTTTGATGTGCCCTCTATCAAACTTGATGTA
CCTCTATACTGCACTTATGCCTCCCTTTCTTGCCCTCGCGACCCCCCCCT
CCCCACCGCCTGTTGTAGGATGGTTTGAGGGGCCCGAGGCCGAGGACATT
TCTTATGCCGAGGCCCTCAATGCACTGCCCGTCAACATGGGCCTGGGGGT
GGAGGCAAGGAGGTGCAATAAACCCATTAATCAGATGGCCAGGGCCTATT
GCTCGAACCACAATGACCCCAACTATATACCCCTCAGGTGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig104:102549..105189-

>mRNA_S-ischiensis_contig104.1797.1 ID=mRNA_S-ischiensis_contig104.1797.1|Name=mRNA_S-ischiensis_contig104.1797.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=990bp|location=Sequence derived from alignment at S-ischiensis_contig104:102549..105189- (Schizocladia ischiensis KU_0333)
ATGGCTAACTACTGCTCAACCATATCGGAGGCCCTGGGGCAGCCTATGGA
GGTGGAGCATGACGTACGGCTCTTCTATGACGACGAGGAACTCAGGGCAT
CACTACTGGAGCACACGGGATGGCTAACTACTGCTCAACCATATCGGAGG
CCCTGGGGCAGCCTATGGAGGTGGAGCATGACGTACGGCTCTTCTATGAC
GACGAGGAACTCAGGGCATCACTACTGGAGCACACGGGCGGGCCCGCCAG
CTATGCCTGCAAGAAGTGGGCCTCTGATGGTAACACCAAGACCCCAGCAA
AGGAGGGGGTGCGAGCGGTGCACTTTGTCCGGGACCCAGTGGACATTATC
CTTTCAGCGGGCCCGCCAGCTATGCCTGCAAGAAGTGGGCCTCTGATGGT
AACACCAAGACCCCAGCAAAGGAGGGGGTGCGAGCGGTGCACTTTGTCCG
GGACCCAGTGGACATTATCCTTTCAGCGTACAACTACCACAAGGAGGCAC
CGGAGCAGTGGACCATGGACCCCTGGGCAATGCGAGCCTCATACATGTAC
CGCCCTGACGCGTACAACTACCACAAGGAGGCACCGGAGCAGTGGACCAT
GGACCCCTGGGCAATGCGAGCCTCATACATGTACCGCCCTGACGGATGGT
TTGAGGGGCCCGAGGCCGAGGACATTTCTTATGCCGAGGCCCTCAATGCA
CTGCCCGTCAACATGGGCCTGGGGGTGGAGGCAAGGAGGTGCAATAAACC
CATTAATCAGATGGCCAGGGCCTATTGCTCGAACCACAATGACCCCAACT
ATATACCCCTCAGGTGAGATGGTTTGAGGGGCCCGAGGCCGAGGACATTT
CTTATGCCGAGGCCCTCAATGCACTGCCCGTCAACATGGGCCTGGGGGTG
GAGGCAAGGAGGTGCAATAAACCCATTAATCAGATGGCCAGGGCCTATTG
CTCGAACCACAATGACCCCAACTATATACCCCTCAGGTGA
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