mRNA_S-ischiensis_contig103.1791.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig103.1791.1
Unique NamemRNA_S-ischiensis_contig103.1791.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig103.1791.1 vs. uniprot
Match: D7G2V4_ECTSI (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2V4_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 2.080e-23
Identity = 55/93 (59.14%), Postives = 63/93 (67.74%), Query Frame = 3
Query:   12 LPMGLRNQGNTCYMNSLLQTLYHVEGLREVVLTEGXXXXXXSTLEGLRDVFAQLRRSGGRPGTTVALTRAMEIDPRFQQDAQEFGRFLFMNIE 290
            LP GL NQGNTCY+NSLLQ LYH  GLRE V           T+  L  VF QL + GGRP +T+ +TRAM +DP  QQDAQEFGRFLFM +E
Sbjct:   96 LPNGLANQGNTCYLNSLLQALYHAPGLREAVFEALTGGGDSETVLALGTVFRQLEQ-GGRPASTLPVTRAMGVDPTVQQDAQEFGRFLFMALE 187          
BLAST of mRNA_S-ischiensis_contig103.1791.1 vs. uniprot
Match: A0A835YMK6_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMK6_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.750e-19
Identity = 53/91 (58.24%), Postives = 62/91 (68.13%), Query Frame = 3
Query:   15 PMGLRNQGNTCYMNSLLQTLYHVEGLREVVLTEGXXXXXXSTLEGLRDVFAQLRRSGGRPGTTVALTRAMEIDPRFQQDAQEFGRFLFMNI 287
            P+GL NQGNTCYMNSLLQT ++V  LR  VL+          L GL+ VF  LR   G  G+T  LT AM IDPR+QQDAQEFGRFLFM++
Sbjct:  227 PVGLENQGNTCYMNSLLQTAFNVPRLRGAVLSA---PKAGGALGGLQRVFEDLRAGYGA-GSTRPLTAAMGIDPRYQQDAQEFGRFLFMSL 313          
BLAST of mRNA_S-ischiensis_contig103.1791.1 vs. uniprot
Match: A0A7S2BF77_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BF77_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 3.360e-15
Identity = 46/104 (44.23%), Postives = 56/104 (53.85%), Query Frame = 3
Query:   15 PMGLRNQGNTCYMNSLLQTLYHVEGLREVVLTEGXXXXXXSTLEGLRDVFAQLR-RSGGRPGTTVALTRAMEIDPRFQQDAQEFGRFLFMNIEVSAAGPGVPEY 323
            P GL N GNTCYMN+LLQ LYHV+ +RE V+              L  +F  L+    GRP  T AL RA+ +D R QQD+QEF   LF  +    A PG   Y
Sbjct:  123 PNGLTNHGNTCYMNALLQGLYHVDAVREAVIDAAADSGAGGVPGALAAIFRALKLNENGRPAPTKALCRALGVDVREQQDSQEFRAALFAELTSHPAMPGEALY 226          
BLAST of mRNA_S-ischiensis_contig103.1791.1 vs. uniprot
Match: F0Y3L1_AURAN (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3L1_AURAN)

HSP 1 Score: 74.3 bits (181), Expect = 6.400e-12
Identity = 48/105 (45.71%), Postives = 56/105 (53.33%), Query Frame = 3
Query:   21 GLRNQGNTCYMNSLLQTLYHVEGLREVVLTEGXXXXXXSTLEGLRD---------VFAQLRRSGGRPGTTVALTRAMEIDPRFQQDAQEFGRFLFMNI-EVSAAG 305
            GLRNQGNTCY+NSLLQTLYHV  LR  V+ +         L  LR          VFA LR  G     T ALTR++ +    QQDAQE+ R L   + E   AG
Sbjct:   22 GLRNQGNTCYLNSLLQTLYHVPKLRSAVIDDAPAPAKRGPLARLRPKVPALALARVFATLR--GNSTARTGALTRSLRVSGMQQQDAQEYLRILVGELLEAPVAG 124          
BLAST of mRNA_S-ischiensis_contig103.1791.1 vs. uniprot
Match: A0A7S2XW18_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XW18_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 5.840e-11
Identity = 41/98 (41.84%), Postives = 54/98 (55.10%), Query Frame = 3
Query:   21 GLRNQGNTCYMNSLLQTLYHVEGLREVVL--TEGXXXXXXSTLEGLRDVFAQLR------RSGGRPGTTVALTRAMEIDPRFQQDAQEFGRFLFMNIE 290
            GL NQGNTCY+NSLLQ LYH+   R++++  +           E L  VFA L+      +  G   +T  LT  + +DPR QQDAQEF R L   +E
Sbjct:  240 GLVNQGNTCYLNSLLQLLYHLPAFRDLLIPGSSRTCVAPGPVGEALGKVFAALKERELQGQEAGGAVSTTPLTSLLGVDPRVQQDAQEFNRLLIAAME 337          
BLAST of mRNA_S-ischiensis_contig103.1791.1 vs. uniprot
Match: A0A8J2X4Q1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X4Q1_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.730e-9
Identity = 45/104 (43.27%), Postives = 56/104 (53.85%), Query Frame = 3
Query:   21 GLRNQGNTCYMNSLLQTLYHVEGLREVVLTEGXXXXXXSTLEGLR----------DVFAQLRRSGGRPGTTVALTRAMEIDPRFQQDAQEFGRFLFMNIEVSAA 302
            GLRNQGNTCY+NSLLQTL+HV  LR  VL  G        ++ LR          DVF +L ++      T  LTRA+ +    QQDAQE+ R L   +   AA
Sbjct:   24 GLRNQGNTCYLNSLLQTLFHVPALRSDVL--GRPAEPRGLMKRLRTAPRPARALADVFKRLAQNA--TAQTRGLTRALGVSGLQQQDAQEYLRLLVGELCEDAA 123          
BLAST of mRNA_S-ischiensis_contig103.1791.1 vs. uniprot
Match: A0A1J4K410_9EUKA (Ubiquitinyl hydrolase 1 n=1 Tax=Tritrichomonas foetus TaxID=1144522 RepID=A0A1J4K410_9EUKA)

HSP 1 Score: 65.1 bits (157), Expect = 1.040e-8
Identity = 42/124 (33.87%), Postives = 62/124 (50.00%), Query Frame = 3
Query:   18 MGLRNQGNTCYMNSLLQTLYHVEGLREVVL---TEGXXXXXXSTLEGLRDVFAQLRRSGGRPGTTVALTRAM---EIDPRFQQDAQEFGRFLFMNIEVSAAGPGVPEYFCRRRRRRLHGAVFCK 371
            +GL NQG TCYMNSLLQ LYH+   R +V    T G      S    L+ +F Q++    +  +TVALT++      +   Q D +EF R L  N+E+   G  + +   R  + +    + CK
Sbjct:  684 VGLNNQGATCYMNSLLQALYHLSAFRRLVYEIPTTGSEDSDTSIPLNLQRLFCQMQFCD-KSCSTVALTKSFGWGSAETFMQHDIEEFSRVLIDNLEMKMKGTPLQDAIPRLFKGKFRNYIRCK 806          
BLAST of mRNA_S-ischiensis_contig103.1791.1 vs. uniprot
Match: A0A6A4WZ86_AMPAM (Ubiquitin carboxyl-terminal hydrolase 7 n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4WZ86_AMPAM)

HSP 1 Score: 63.5 bits (153), Expect = 1.090e-8
Identity = 46/113 (40.71%), Postives = 57/113 (50.44%), Query Frame = 3
Query:   18 MGLRNQGNTCYMNSLLQTLYHVEGLREVVL---TEGXXXXXXSTLEGLRDVFAQLRRSGGRPGTTVALTRAM---EIDPRFQQDAQEFGRFLFMNIEVSAAGPG----VPEYF 326
            MGLRNQG TCY+NSLLQTLY     R+ VL   TE         L  L+ VF +L+ S  +P  T  LT +      D   QQD +EF R L   ++V   G      +PE F
Sbjct:    1 MGLRNQGATCYLNSLLQTLYFTNNFRKAVLKTPTENDDPPKPM-LRALQWVFGELQHSD-KPVGTKKLTESFVWGTTDCSMQQDVEEFLRVLLEKLQVELKGTSMERVIPELF 111          
BLAST of mRNA_S-ischiensis_contig103.1791.1 vs. uniprot
Match: A0A7J7KAD0_BUGNE (Ubiquitinyl hydrolase 1 n=2 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7KAD0_BUGNE)

HSP 1 Score: 64.7 bits (156), Expect = 1.310e-8
Identity = 38/100 (38.00%), Postives = 56/100 (56.00%), Query Frame = 3
Query:   12 LPMGLRNQGNTCYMNSLLQTLYHVEGLREVVL--TEGXXXXXXSTLEGLRDVFAQLR--RSGGRPGTTVALTRAM---EIDPRFQQDAQEFGRFLFMNIE 290
            LP GL N+ NTCY+NSL+Q L+H++  R+++   T        S LE L+ +F +L   R   +  TT  LT+A     I+   QQD  EF + LF ++E
Sbjct:   48 LPRGLYNESNTCYLNSLIQVLFHIQAFRQLIFSFTPRQSHKKLSVLESLQWLFLELEEGRDDNKVVTTNRLTKAFGWTSINRGLQQDVHEFMQMLFNSLE 147          
BLAST of mRNA_S-ischiensis_contig103.1791.1 vs. uniprot
Match: UPI000A30AD65 (ubiquitin carboxyl-terminal hydrolase 7-like n=1 Tax=Mus pahari TaxID=10093 RepID=UPI000A30AD65)

HSP 1 Score: 64.7 bits (156), Expect = 1.310e-8
Identity = 48/126 (38.10%), Postives = 65/126 (51.59%), Query Frame = 3
Query:   18 MGLRNQGNTCYMNSLLQTLYHVEGLREVVL---TEGXXXXXXSTLEGLRDVFAQLRRSGGRPGTTVALTRAM---EIDPRFQQDAQEFGRFLFMNIEVSAAGPGVPEYFCRRRRRRLHGAVFCKLL 377
            +GL+NQG TCYMNSLLQTL+     R+ V    TEGXX    S    L+ VF +L+ +  +P  T  LT++     +D   QQD QE  R L  N+E    G  V     +  R ++   + CK L
Sbjct:  213 VGLKNQGATCYMNSLLQTLFFTNQFRKAVYLMPTEGXXDSSKSIPLALQRVFYELQHNN-KPVGTKKLTKSFGWETLDSFMQQDVQELCRVLLGNVENKMKGTCVEGTIPKLFRGKMVSYIQCKKL 337          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig103.1791.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2V4_ECTSI2.080e-2359.14Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Ecto... [more]
A0A835YMK6_9STRA2.750e-1958.24Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Trib... [more]
A0A7S2BF77_9STRA3.360e-1544.23Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Flor... [more]
F0Y3L1_AURAN6.400e-1245.71Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Aure... [more]
A0A7S2XW18_9STRA5.840e-1141.84Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A8J2X4Q1_9STRA2.730e-943.27Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A1J4K410_9EUKA1.040e-833.87Ubiquitinyl hydrolase 1 n=1 Tax=Tritrichomonas foe... [more]
A0A6A4WZ86_AMPAM1.090e-840.71Ubiquitin carboxyl-terminal hydrolase 7 n=1 Tax=Am... [more]
A0A7J7KAD0_BUGNE1.310e-838.00Ubiquitinyl hydrolase 1 n=2 Tax=Bugula neritina Ta... [more]
UPI000A30AD651.310e-838.10ubiquitin carboxyl-terminal hydrolase 7-like n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig103contigS-ischiensis_contig103:313789..315497 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.8
Seed ortholog evalue1.3e-19
Seed eggNOG ortholog2880.D7G2V4
KEGG koko:K11838
KEGG Pathwayko04068,ko05168,ko05169,ko05203,map04068,map05168,map05169,map05203
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5077@1,KOG1863@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size626
Cds size420
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig103.1791.1prot_S-ischiensis_contig103.1791.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig103 313978..315480 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815559.465922-UTR-S-ischiensis_contig103:313788..3139771622815559.465922-UTR-S-ischiensis_contig103:313788..313977Schizocladia ischiensis KU_0333UTRS-ischiensis_contig103 313789..313977 -
1695739769.8158143-UTR-S-ischiensis_contig103:313788..3139771695739769.8158143-UTR-S-ischiensis_contig103:313788..313977Schizocladia ischiensis KU_0333UTRS-ischiensis_contig103 313789..313977 -
1622815559.5097368-UTR-S-ischiensis_contig103:315480..3154971622815559.5097368-UTR-S-ischiensis_contig103:315480..315497Schizocladia ischiensis KU_0333UTRS-ischiensis_contig103 315481..315497 -
1695739769.853342-UTR-S-ischiensis_contig103:315480..3154971695739769.853342-UTR-S-ischiensis_contig103:315480..315497Schizocladia ischiensis KU_0333UTRS-ischiensis_contig103 315481..315497 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815559.481833-CDS-S-ischiensis_contig103:313977..3142241622815559.481833-CDS-S-ischiensis_contig103:313977..314224Schizocladia ischiensis KU_0333CDSS-ischiensis_contig103 313978..314224 -
1695739769.8292537-CDS-S-ischiensis_contig103:313977..3142241695739769.8292537-CDS-S-ischiensis_contig103:313977..314224Schizocladia ischiensis KU_0333CDSS-ischiensis_contig103 313978..314224 -
1622815559.4932468-CDS-S-ischiensis_contig103:315307..3154801622815559.4932468-CDS-S-ischiensis_contig103:315307..315480Schizocladia ischiensis KU_0333CDSS-ischiensis_contig103 315308..315480 -
1695739769.839119-CDS-S-ischiensis_contig103:315307..3154801695739769.839119-CDS-S-ischiensis_contig103:315307..315480Schizocladia ischiensis KU_0333CDSS-ischiensis_contig103 315308..315480 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig103.1791.1

>prot_S-ischiensis_contig103.1791.1 ID=prot_S-ischiensis_contig103.1791.1|Name=mRNA_S-ischiensis_contig103.1791.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=140bp
MGLRNQGNTCYMNSLLQTLYHVEGLREVVLTEGGGGGGGSTLEGLRDVFA
QLRRSGGRPGTTVALTRAMEIDPRFQQDAQEFGRFLFMNIEVSAAGPGVP
EYFCRRRRRRLHGAVFCKLLVQVLAKKIKFRPIFIGGRP*
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mRNA from alignment at S-ischiensis_contig103:313789..315497-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig103.1791.1 ID=mRNA_S-ischiensis_contig103.1791.1|Name=mRNA_S-ischiensis_contig103.1791.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1709bp|location=Sequence derived from alignment at S-ischiensis_contig103:313789..315497- (Schizocladia ischiensis KU_0333)
CTGCGGGTGTTCTGCCCATGGGCCTGCGCAACCAGGGCAACACGTGCTAT ATGAACTCCTTGCTGCAGACTCTGTACCACGTGGAGGGTCTTCGGGAGGT GGTGCTGACCGAAGGTGGAGGCGGGGGAGGGGGGTCCACCCTAGAGGGCT TGCGCGATGTGTTTGCGCAGCTGCGGCGGTCTGGCGGCAGGCGAGTTGAT GTCCTTCCGCGAACGTTTCCTTTGGGGGGATTTTTGCTTAGTGTTTCGTG TTTCGGTGTTGGTGTGTGGGTGTGTTGGGGGGGGGGGTGGGGGTGATGCT GGGGGGGGGCAGTGTGGGTGTGTTGGAGTTATTGTCTTTGCTTGTTTTTT TGGCAACAAGAACGGGCTGTGTTGAGGGCGGTTTAGTCGTGCCCGATGTG TACTCGGGGCCATTTCCCGTATCTACTCTAGCTCTACAGTGTCACGTTGC TTACGCACACTTACGCGGTCTCGGTCTCGGCTCATGGCAAATGGTTGCAG GACTGCAGGAAGCACAACGTGAGTACATACTGCGTAGTACAAGTGTACAT ATACTGTGCACTCACACGCCTGGCAGCTTTCCCACGCTTGACAATTCCAA GTGCATTGTTTTGTCTGTATGTAGTCAATGGTCTCCAGAACAGTAGTCTG TATGGCAAGCACAAGGTGAGCACCTACAGTACAGTACTTACATGCAGTGA ATGAGGTCTGTTGGCAAGAAACGACCTTGAGGTTTCCTCCGTTCGGGGGG CGTTTTCTTGGCCTCCCTAACACTGGTGGGGCTTTTTTTCTTGTGCATAT ATTCTCGGGCCCCCAAGTCGCATGCAGCGGCAAAAATGAATGAATTGCTT CGCGTCAGATGTGATGCGGACGTGAAAGTACCTTTGATTGTAATTTTTCA GGGAGTGGATGATATTTCTCTCTCATGCCAACTATCGGAGAGCATTTCTC GCCGAACGAACGTTCATCGGACTCTCCCGTTGGAAAGTACTCTACCCCGT TAAACAAACTGTGTTTTCGTTGTCCTAGAAAGTCCATTTCGGGCCCCGCT CGGCGGCAAATATTCCCCTGAAAAGCACGCTGCGGGGGGCAAAACATCTC CACCGTGCGCGGTACTTTAGCTCCTCCTCCTCACCTCCCCCACTTCCTCG CCCTCTGATTTGCCTCCTGCTTTGCGTGAAAGGATGTCCCACATTATAAC TGTAGTGACGCGGACCGCATCTCATTTTGGTTTTTTGTTCTCTACCGCTT GGTGTGCCGCTTCGTGCCCGCAGGCCTGGGACCACCGTGGCTCTGACGAG GGCAATGGAAATCGACCCACGCTTCCAGCAAGACGCCCAGGAGTTTGGGC GCTTCCTCTTCATGAACATTGAGGTGAGCGCTGCCGGGCCGGGTGTGCCC GAATATTTCTGCCGCCGCCGGCGGCGGCGGCTGCATGGAGCTGTATTTTG CAAGCTACTCGTACAAGTATTGGCGAAAAAAATTAAGTTCAGGCCAATCT TCATCGGGGGCAGGCCCTGATTGGGGCTATTTCTCGCGGCGGCGGAGCCA CAGCGGTCGGCGGCCCGCCACCGAGAATGGGGCCGTAGGAAACATGGTGC CGGACGTTCGTAGTGACGTGTACTTACCTCCAAGTATATGCCAGCGGGTG CAGAGCTGAGCTCAAGCTACTAGTTACTTCGAAGTACAGTGGATACGAGG TCAATGGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig103:313789..315497-

>mRNA_S-ischiensis_contig103.1791.1 ID=mRNA_S-ischiensis_contig103.1791.1|Name=mRNA_S-ischiensis_contig103.1791.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=840bp|location=Sequence derived from alignment at S-ischiensis_contig103:313789..315497- (Schizocladia ischiensis KU_0333)
ATGGGCCTGCGCAACCAGGGCAACACGTGCTATATGAACTCCTTGCTGCA
GACTCTGTACCACGTGGAGGGTCTTCGGGAGGTGGTGCTGACCGAAGGTG
GAGGCGGGGGAGGGGGGTCCACCCTAGAGGGCTTGCGCGATGTGTTTGCG
CAGCTGCGGCGGTCTGGCGGCAGATGGGCCTGCGCAACCAGGGCAACACG
TGCTATATGAACTCCTTGCTGCAGACTCTGTACCACGTGGAGGGTCTTCG
GGAGGTGGTGCTGACCGAAGGTGGAGGCGGGGGAGGGGGGTCCACCCTAG
AGGGCTTGCGCGATGTGTTTGCGCAGCTGCGGCGGTCTGGCGGCAGGCCT
GGGACCACCGTGGCTCTGACGAGGGCAATGGAAATCGACCCACGCTTCCA
GCAAGACGCCCAGGAGTTTGGGCGCTTCCTCTTCATGAACATTGAGGTGA
GCGCTGCCGGGCCGGGTGTGCCCGAATATTTCTGCCGCCGCCGGCGGCGG
CGGCTGCATGGAGCTGTATTTTGCAAGCTACTCGTACAAGTATTGGCGAA
AAAAATTAAGTTCAGGCCAATCTTCATCGGGGGCAGGCCCTGAGCCTGGG
ACCACCGTGGCTCTGACGAGGGCAATGGAAATCGACCCACGCTTCCAGCA
AGACGCCCAGGAGTTTGGGCGCTTCCTCTTCATGAACATTGAGGTGAGCG
CTGCCGGGCCGGGTGTGCCCGAATATTTCTGCCGCCGCCGGCGGCGGCGG
CTGCATGGAGCTGTATTTTGCAAGCTACTCGTACAAGTATTGGCGAAAAA
AATTAAGTTCAGGCCAATCTTCATCGGGGGCAGGCCCTGA
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