mRNA_S-ischiensis_contig103.1777.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig103.1777.1
Unique NamemRNA_S-ischiensis_contig103.1777.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig103.1777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig103contigS-ischiensis_contig103:97619..97982 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size364
Cds size324
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815556.5395744-CDS-S-ischiensis_contig103:97618..979421622815556.5395744-CDS-S-ischiensis_contig103:97618..97942Schizocladia ischiensis KU_0333CDSS-ischiensis_contig103 97619..97942 +
1695739767.7456121-CDS-S-ischiensis_contig103:97618..979421695739767.7456121-CDS-S-ischiensis_contig103:97618..97942Schizocladia ischiensis KU_0333CDSS-ischiensis_contig103 97619..97942 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815556.55287-UTR-S-ischiensis_contig103:97942..979821622815556.55287-UTR-S-ischiensis_contig103:97942..97982Schizocladia ischiensis KU_0333UTRS-ischiensis_contig103 97943..97982 +
1695739767.756505-UTR-S-ischiensis_contig103:97942..979821695739767.756505-UTR-S-ischiensis_contig103:97942..97982Schizocladia ischiensis KU_0333UTRS-ischiensis_contig103 97943..97982 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig103.1777.1prot_S-ischiensis_contig103.1777.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig103 97619..97942 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig103.1777.1

>prot_S-ischiensis_contig103.1777.1 ID=prot_S-ischiensis_contig103.1777.1|Name=mRNA_S-ischiensis_contig103.1777.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=108bp
SRGASWKPPAPPAEEPPPARPPVVKPPPLSWLVAWCSGASDAREPPRTPP
PPPWPPPSPPPPPGPSALVRWRGALASVVPRPGPLYGPGQPARRPLQPRV
MVSPPQP*
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mRNA from alignment at S-ischiensis_contig103:97619..97982+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig103.1777.1 ID=mRNA_S-ischiensis_contig103.1777.1|Name=mRNA_S-ischiensis_contig103.1777.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=364bp|location=Sequence derived from alignment at S-ischiensis_contig103:97619..97982+ (Schizocladia ischiensis KU_0333)
AGCCGCGGCGCTTCTTGGAAGCCACCCGCTCCGCCGGCGGAGGAGCCTCC
GCCGGCCCGGCCGCCGGTGGTGAAGCCGCCGCCACTCTCATGGCTCGTTG
CCTGGTGCTCTGGCGCGTCCGATGCCCGTGAGCCTCCGAGGACGCCCCCT
CCGCCACCGTGGCCGCCGCCGTCACCCCCGCCACCACCGGGGCCGTCTGC
GCTAGTGAGATGGCGGGGGGCTCTGGCTTCTGTCGTGCCACGCCCCGGTC
CCCTTTACGGCCCGGGTCAGCCCGCGAGGCGTCCGCTGCAGCCCCGGGTG
ATGGTGTCCCCCCCCCAGCCCTAGCCGGCGTACGGTCAGCTTCCATTGGC
TTGAAACCCAGCAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig103:97619..97982+

>mRNA_S-ischiensis_contig103.1777.1 ID=mRNA_S-ischiensis_contig103.1777.1|Name=mRNA_S-ischiensis_contig103.1777.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=648bp|location=Sequence derived from alignment at S-ischiensis_contig103:97619..97982+ (Schizocladia ischiensis KU_0333)
AGCCGCGGCGCTTCTTGGAAGCCACCCGCTCCGCCGGCGGAGGAGCCTCC
GCCGGCCCGGCCGCCGGTGGTGAAGCCGCCGCCACTCTCATGGCTCGTTG
CCTGGTGCTCTGGCGCGTCCGATGCCCGTGAGCCTCCGAGGACGCCCCCT
CCGCCACCGTGGCCGCCGCCGTCACCCCCGCCACCACCGGGGCCGTCTGC
GCTAGTGAGATGGCGGGGGGCTCTGGCTTCTGTCGTGCCACGCCCCGGTC
CCCTTTACGGCCCGGGTCAGCCCGCGAGGCGTCCGCTGCAGCCCCGGGTG
ATGGTGTCCCCCCCCCAGCCCTAGAGCCGCGGCGCTTCTTGGAAGCCACC
CGCTCCGCCGGCGGAGGAGCCTCCGCCGGCCCGGCCGCCGGTGGTGAAGC
CGCCGCCACTCTCATGGCTCGTTGCCTGGTGCTCTGGCGCGTCCGATGCC
CGTGAGCCTCCGAGGACGCCCCCTCCGCCACCGTGGCCGCCGCCGTCACC
CCCGCCACCACCGGGGCCGTCTGCGCTAGTGAGATGGCGGGGGGCTCTGG
CTTCTGTCGTGCCACGCCCCGGTCCCCTTTACGGCCCGGGTCAGCCCGCG
AGGCGTCCGCTGCAGCCCCGGGTGATGGTGTCCCCCCCCCAGCCCTAG
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