mRNA_S-ischiensis_contig103.1776.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig103.1776.1
Unique NamemRNA_S-ischiensis_contig103.1776.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig103.1776.1 vs. uniprot
Match: D8LSJ5_ECTSI (Erf4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSJ5_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 1.280e-40
Identity = 65/120 (54.17%), Postives = 90/120 (75.00%), Query Frame = 3 
Query:  117 VIRLEAVGLPILCTGLSSCYEDTYPPEMDGVLNELEWHECVGRINKAMADRFPCVMCQVQTYMCCLCTLGLTLVAQRKQALEMERGVQEVIGHINRGLETRGRPVRFALRRTNCNSWLEV 476
            VIRLE +G+ +  TG+SS Y+D YPPE+DG +   EW EC+GRIN+A+ DRFPC +C++Q Y  C CTLGL+L++ RK+A E+ERGV EV+  +N+ LE R R VRF   RT C++W++V
Sbjct:   14 VIRLEPIGIKLGATGISSAYDDQYPPELDGWMTTEEWFECIGRINRALMDRFPCGLCRLQAYCFCPCTLGLSLLSMRKEAKEIERGVGEVVKTVNQNLEARRRSVRFGFHRTFCSAWVQV 133
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BLAST of mRNA_S-ischiensis_contig103.1776.1 vs. uniprot
Match: A0A835YUQ2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUQ2_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 3.430e-18
Identity = 47/118 (39.83%), Postives = 67/118 (56.78%), Query Frame = 3 
Query:  126 LEAVGLPILCTGLSSCYEDTYPPEMDGVLNELEWHECVGRINKAMADRFPCVMCQ-VQTYMCCLCTLGLTLVAQRKQALEMERGVQEVIGHINRGLETRGRP--VRFALRRTNCNSWL 470
            LEA G  +  TGLSS Y+D  PPE+   + + +W   + RIN+        +  Q    ++CC CTLGL+L   R ++L+MERG + VIG++N  L  +G    VRF LRR  C + L
Sbjct:   16 LEATGTTLALTGLSSSYDDAMPPELGDYIGQEQWDTAMDRINRQATTVLDSLWNQKANAWLCCPCTLGLSLCIYRSESLDMERGAKVVIGYVNESLAAKGAAAAVRFELRRRCCTTRL 133
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BLAST of mRNA_S-ischiensis_contig103.1776.1 vs. uniprot
Match: A0A067CI05_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CI05_SAPPC)

HSP 1 Score: 82.8 bits (203), Expect = 1.790e-16
Identity = 45/131 (34.35%), Postives = 74/131 (56.49%), Query Frame = 3 
Query:  102 EHGVEVIRLEAVGLPILCTGLSSCYEDTYPPEMDGVLNELEWHECVGRINKAMADRFPCVMCQVQTYMCCLCTLGLTLVAQRKQALEMERGVQEVIGHINRGLET---RGRPVRFALRRTNCNSWLEVAQL 485
            E  + + RL AV  P+   G  S Y  TYP  + G++   E++ C+  IN+A++D +PC+ C    Y+CCL TLGL+L+ ++    E+E+ V+ V+  +N+  ET   RG   +    R    SW+E+ Q+
Sbjct:   11 EDDIVLARLMAVA-PMTVDGWPSAYASTYPMALKGIVPSAEFNTCIEAINQAVSDYYPCIPCYSCGYLCCLSTLGLSLLVRQPCTTELEQAVEMVLKRVNKR-ETFLFRGLVWKLKRPRHTYTSWIEICQV 139
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BLAST of mRNA_S-ischiensis_contig103.1776.1 vs. uniprot
Match: A0A1V9YAM6_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YAM6_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 5.480e-14
Identity = 42/133 (31.58%), Postives = 71/133 (53.38%), Query Frame = 3 
Query:   93 PQAEHGVEVIRLEAVGLPILCTGLSSCYEDTYPPEMDGVLNELEWHECVGRINKAMADRFPCVMCQVQTYMCCLCTLGLTLVAQRKQALEMERGVQEVIGHINRGLETRGRPVRFALRRTN--CNSWLEVAQL 485
            P+ E  + + RL AVGL  +  G  S Y   +P  + G++   E+H C+  IN+ + D +PC+ C    Y+CC+ TLGL+L+ ++    E+E  +  V+  IN       R + + L+R      SW+E+ Q+
Sbjct:    8 PEDEDDIVLARLMAVGLATV-DGWPSAYAANFPLSLKGIVPPTEFHTCIEAINQVVNDYYPCLPCYGCGYLCCISTLGLSLLMRQPCTKELENAIDIVLKRINSREPFLYRGLVWKLKRPRHTYTSWIEICQV 139
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BLAST of mRNA_S-ischiensis_contig103.1776.1 vs. uniprot
Match: A0A1V9Z5W3_9STRA (Erf4 domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z5W3_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.370e-10
Identity = 32/107 (29.91%), Postives = 59/107 (55.14%), Query Frame = 3 
Query:  159 GLSSCYEDTYPPEMDGVLNELEWHECVGRINKAMADRFPCVMCQVQTYMCCLCTLGLTLVAQRKQALEMERGVQEVIGHINRGLETRGRPVRFALRRTNCNSWLEVA 479
            G+S  Y+D +PPE+ G ++E ++   + +IN  + D +PC+ C    Y CC+CT GL+L+       + E+  + +I  IN+        V++ L +    S++EV+
Sbjct:   19 GISRAYDDEFPPELQGRVDETQFTHAINQINNTLTDYWPCLFCVCYGYACCICTGGLSLLCPHMCISDAEQYARTLIDRINQRPCFEDAGVQWKLVKRCGRSYIEVS 125
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BLAST of mRNA_S-ischiensis_contig103.1776.1 vs. uniprot
Match: A0A0V0QBG3_PSEPJ (Uncharacterized protein n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0QBG3_PSEPJ)

HSP 1 Score: 53.1 bits (126), Expect = 2.820e-5
Identity = 27/99 (27.27%), Postives = 50/99 (50.51%), Query Frame = 3 
Query:  105 HGVEVIRLEAVGLPILCTGLSSCYEDTYPPEMDGVLNELEWHECVGRINKAMADRFPCVMCQVQTYMCCLCTLGLTLVAQRKQALEMERGVQEVIGHIN 401
            H    I+L A G  +   G SS Y+DTYP ++ G+LN+ ++ + +  +N  +   + C +C    ++C + T+GL+ +  +    + E    E I   N
Sbjct:    5 HLQSSIKLNANG-KLYINGFSSSYDDTYPQQLKGILNQRQFQKIMDELNSVIQSYWSCGLCHYFGWLCSVPTVGLSFLCPKLCQQQAEEMAVEKISEFN 102
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig103.1776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LSJ5_ECTSI1.280e-4054.17Erf4 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835YUQ2_9STRA3.430e-1839.83Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A067CI05_SAPPC1.790e-1634.35Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1V9YAM6_9STRA5.480e-1431.58Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A1V9Z5W3_9STRA1.370e-1029.91Erf4 domain-containing protein n=1 Tax=Achlya hypo... [more]
A0A0V0QBG3_PSEPJ2.820e-527.27Uncharacterized protein n=1 Tax=Pseudocohnilembus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig103contigS-ischiensis_contig103:91641..94682 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.7
Seed ortholog evalue1.5e-12
Seed eggNOG ortholog112098.XP_008614484.1
EggNOG OGs2CY4G@1,2S1Z6@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size691
Cds size546
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig103.1776.1prot_S-ischiensis_contig103.1776.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig103 91715..94611 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815557.4137394-UTR-S-ischiensis_contig103:91640..917141622815557.4137394-UTR-S-ischiensis_contig103:91640..91714Schizocladia ischiensis KU_0333UTRS-ischiensis_contig103 91641..91714 +
1695739768.3259747-UTR-S-ischiensis_contig103:91640..917141695739768.3259747-UTR-S-ischiensis_contig103:91640..91714Schizocladia ischiensis KU_0333UTRS-ischiensis_contig103 91641..91714 +
1622815557.482801-UTR-S-ischiensis_contig103:94611..946821622815557.482801-UTR-S-ischiensis_contig103:94611..94682Schizocladia ischiensis KU_0333UTRS-ischiensis_contig103 94612..94682 +
1695739768.3864446-UTR-S-ischiensis_contig103:94611..946821695739768.3864446-UTR-S-ischiensis_contig103:94611..94682Schizocladia ischiensis KU_0333UTRS-ischiensis_contig103 94612..94682 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815557.4249682-CDS-S-ischiensis_contig103:91714..917991622815557.4249682-CDS-S-ischiensis_contig103:91714..91799Schizocladia ischiensis KU_0333CDSS-ischiensis_contig103 91715..91799 +
1695739768.3376205-CDS-S-ischiensis_contig103:91714..917991695739768.3376205-CDS-S-ischiensis_contig103:91714..91799Schizocladia ischiensis KU_0333CDSS-ischiensis_contig103 91715..91799 +
1622815557.4367106-CDS-S-ischiensis_contig103:91914..920081622815557.4367106-CDS-S-ischiensis_contig103:91914..92008Schizocladia ischiensis KU_0333CDSS-ischiensis_contig103 91915..92008 +
1695739768.3525977-CDS-S-ischiensis_contig103:91914..920081695739768.3525977-CDS-S-ischiensis_contig103:91914..92008Schizocladia ischiensis KU_0333CDSS-ischiensis_contig103 91915..92008 +
1622815557.4504507-CDS-S-ischiensis_contig103:92700..928191622815557.4504507-CDS-S-ischiensis_contig103:92700..92819Schizocladia ischiensis KU_0333CDSS-ischiensis_contig103 92701..92819 +
1695739768.3666775-CDS-S-ischiensis_contig103:92700..928191695739768.3666775-CDS-S-ischiensis_contig103:92700..92819Schizocladia ischiensis KU_0333CDSS-ischiensis_contig103 92701..92819 +
1622815557.4669144-CDS-S-ischiensis_contig103:94363..946111622815557.4669144-CDS-S-ischiensis_contig103:94363..94611Schizocladia ischiensis KU_0333CDSS-ischiensis_contig103 94364..94611 +
1695739768.3759916-CDS-S-ischiensis_contig103:94363..946111695739768.3759916-CDS-S-ischiensis_contig103:94363..94611Schizocladia ischiensis KU_0333CDSS-ischiensis_contig103 94364..94611 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig103.1776.1

>prot_S-ischiensis_contig103.1776.1 ID=prot_S-ischiensis_contig103.1776.1|Name=mRNA_S-ischiensis_contig103.1776.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=182bp
MATANSPQAEHGVEVIRLEAVGLPILCTGLSSCYEDTYPPEMDGVLNELE
WHECVGRINKAMADRFPCVMCQVQTYMCCLCTLGLTLVAQRKQALEMERG
VQEVIGHINRGLETRGRPVRFALRRTNCNSWLEVAQLPVTPALPPDSGSP
CLANACSGYAGPPERAGATAAIQESKQIQHP*
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mRNA from alignment at S-ischiensis_contig103:91641..94682+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig103.1776.1 ID=mRNA_S-ischiensis_contig103.1776.1|Name=mRNA_S-ischiensis_contig103.1776.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3042bp|location=Sequence derived from alignment at S-ischiensis_contig103:91641..94682+ (Schizocladia ischiensis KU_0333)
CTCTACTTGAGTACAGACCTGTGACTGCTTTTCCTTAGCAGCTGCTGCAG
CTGCGTGGTAGGCTGGGAACTGGGATGGCGACCGCCAACAGTCCACAAGC
AGAGCACGGGGTGGAAGTGATACGCCTGGAAGCTGTTGGCCTGCCCATAT
TGTGCACAGGCAAGGCAGTGCTGCCGGCGCAGCTGCTGGTCATGTGAAAA
TGCGGCTCGTGTCAACTTCGTGTGGCATGCAACACAATGCAAATCTGACA
CCCGTCGTGCTGCGCGATGCACAGGCCTGTCGAGCTGCTACGAGGATACC
TACCCGCCCGAGATGGATGGGGTGCTGAATGAGCTCGAATGGCATGAGTG
CGTGGGGAGGATAAACAAGTGAGTGGGTTTAGCCCTGGGTTGGTGGAGGG
CTTGATGAGAGCCCTTTGCTCACAGCAAGTATGGCTGCCTTCTGGTGCTC
TCAGTGGCTCGTACTTCCACGGTCCGTGGAGGAATATCCCAATGTCACTC
CGCCCCCTGCACGCACAGCGCGGGGAAGTACGAGTACCGGTTCTACTACA
CTAGGAGTACTTTGTACATACTTGTATAGTGTTTTTCGTACACGGCAGGT
CGTGCAGAGCGCAATGGACACTACTAGTACTGTACAGTACAAGTATTGGC
TAACCCTGAAGCGCAAGTGTGTATAGTCACATGAACTTGAGCTAGTCTCA
CTTGGCCCGCCAGTGTGAGCTTGTAGCACGCACTATCATGCAGGCAGAAA
TCCTAAACCACTACACAATGGTGCAATGATGCATGTACTGTACTACTACA
GCAGTATACTACTACTACGTACTGTACTACAGTACAGTACATACAGTGCC
CAACTGAGGCTAATGAAATACTTCGAAGTACCTACAGTACCTCGTATCGC
CTGGTAAGCCGACCCTCGGCCACCAATTGTCCGTGTCCTCTGCTGCTGCC
GCTGCCGCCGCCGCCGCCGCCGCCACCGCCGCCGCCGCCGCCGCTACCGC
CACCGCCACGACCGCTCCTACGGCCGCCCCCGCCACTACTACGCCCAAAC
TGCGCCGCAGGGCGATGGCAGACCGTTTTCCATGTGTCATGTGCCAGGTG
CAGACGTACATGTGCTGCCTGTGCACCCTGGGGCTGACACTGGTGGCGCA
AAGGAAACAAGCCCTGGAGATGGAGCGAGGTGCGACAAGACGCGTAGAGT
ACTTCCAAGTAGTTTATTATTGTATACGAAGTGCTTCAAAGTACTATTAT
TGCAAGTACGTGTAGTTTCTGTGACTTGTCGGAAGCAGCACTTGCTGTTC
AGTCACGGGTACGAGACGAAGATGTCAGACAATAGCGTGCTGATAGTACT
ACAGTACATTAGTACTACTGTAGTAGTGACACATCTATGTGCTCTAGTAC
TGTAGTACTTGTACTCACATGTATGCTATTCCAAGTACATGTTGGGTTAT
TGCATGCCACAGCCCCAAGAGATCATACAGTTGACTACTGTACAGTATAC
CGCATGCCGTCATGGCATCATCCGAGTGCAGCGCAAGTACTGTACTGTAT
TTGGAATTACTGGAGTACTCTACAGTATTAGACTAAATACTGGCATGGTG
CCATCCAGGCTACGTGGCAGTACTTGAAAGTACTGTACCACTTCCGAGTA
CTTCCGGAAGTAGCAGTACTGTACTAGTAGTACTGTATTGTACAGTTGTT
GGTACTTCCAAGTGGTTGACGAGCATGCATGAGTACAGTGGGGTACCTAC
CTTTCCCTACCTAGAGCTCCACTACTGTACAGTGGAAGTACTACTGTAGT
ACGGCTTCCTTCCCCTATAGAGTGCATCTCCTGCGATGTGCCTGCTGCTT
GTGATGTACAGTGGAAGTACTACTGTATTACGGCTTCCTTCCCTTATAGA
GTATTCGTATATCTCCTGTGATTTGCCTGCTGCTTGGCGAGAAAGGGCGG
TATTGCCAAGAAGTTACGTGTGAAGTGGCGTGGACCACACCTTGCCTTGG
TATGTGTTGTACAGTACGTAGAGTAGTAGAGTACGGTACAGTACAGTACA
GTACAGTACATGAGTACGGGTACTAGAGTGCAGTAGTGCTGCAATGCTCG
AGCGCAAGTACTTGGGAAGTATGCCAAAGTCCATGCTCTACTGGAAGTAT
GGCCAAGAATTCATCTGCTGCAGTGCTTGGAAGTGCCATGCGACAAGTGC
TACTGTATACCTCAAAGTACATACTGTGAAGTTCAAGTATTTGTCGCGCA
TGCAGTAGCCTGAAGAGTGCAGCATTGGTCACCGGTCCCTCGGCTACAAT
TGCACTTCCGGAAGTACGGCAAACCTACCAAGTAATGTACTAGGAAGTAG
TCACATACTACAGTATGTAGCATCTATGTACATAGCGTGCTTCCGGAAGT
AAGAGAGTGCAGTACTATGTAATGTGTGCTTCAAATATTCAAGCACTTTC
AAGTACCCGTCCTTCGCCTCGCCCTGTGTTGTTCCTGTGACTACTCTCCC
GTTGCAAGCTATAAGGAAGGGCCACTGCTGAGGTCTTTAGTGACGTGGCC
CGCACTTCACCCCGTATTGCTCTTGTTAATGCTCGCCCTGAAGGCGAGAG
AGGAGACGGGCTTCCGGGGATTGGGTCCTCTCAAGTACAGTAGGAACATC
TCCTCTGTCCCACTCGCTTTAATCTTCTTGCAAAAAAAAAAACAAACAAA
ACAAAAAAAATCTCCCATTGCAGGCGTCCAGGAGGTGATTGGCCACATCA
ATCGAGGACTGGAGACCAGGGGCCGCCCTGTACGTTTCGCCTTGAGACGC
ACAAATTGCAACTCCTGGCTGGAGGTTGCACAGTTGCCAGTCACTCCAGC
ACTGCCACCAGACTCCGGGTCACCATGTTTGGCCAATGCCTGTTCAGGGT
ACGCTGGGCCGCCCGAGCGGGCCGGTGCGACGGCAGCCATACAAGAATCA
AAACAGATACAACATCCATGAGAATAATTTTGCAGCAGAGATAACACGAT
CAGACAAGAGAGTCAGAGCGACTGGCCCGTTTTTTTGCAAGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig103:91641..94682+

>mRNA_S-ischiensis_contig103.1776.1 ID=mRNA_S-ischiensis_contig103.1776.1|Name=mRNA_S-ischiensis_contig103.1776.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1092bp|location=Sequence derived from alignment at S-ischiensis_contig103:91641..94682+ (Schizocladia ischiensis KU_0333)
ATGGCGACCGCCAACAGTCCACAAGCAGAGCACGGGGTGGAAGTGATACG
CCTGGAAGCTGTTGGCCTGCCCATATTGTGCACAGATGGCGACCGCCAAC
AGTCCACAAGCAGAGCACGGGGTGGAAGTGATACGCCTGGAAGCTGTTGG
CCTGCCCATATTGTGCACAGGCCTGTCGAGCTGCTACGAGGATACCTACC
CGCCCGAGATGGATGGGGTGCTGAATGAGCTCGAATGGCATGAGTGCGTG
GGGAGGATAAACAAGCCTGTCGAGCTGCTACGAGGATACCTACCCGCCCG
AGATGGATGGGGTGCTGAATGAGCTCGAATGGCATGAGTGCGTGGGGAGG
ATAAACAAGGCGATGGCAGACCGTTTTCCATGTGTCATGTGCCAGGTGCA
GACGTACATGTGCTGCCTGTGCACCCTGGGGCTGACACTGGTGGCGCAAA
GGAAACAAGCCCTGGAGATGGAGCGAGGGCGATGGCAGACCGTTTTCCAT
GTGTCATGTGCCAGGTGCAGACGTACATGTGCTGCCTGTGCACCCTGGGG
CTGACACTGGTGGCGCAAAGGAAACAAGCCCTGGAGATGGAGCGAGGCGT
CCAGGAGGTGATTGGCCACATCAATCGAGGACTGGAGACCAGGGGCCGCC
CTGTACGTTTCGCCTTGAGACGCACAAATTGCAACTCCTGGCTGGAGGTT
GCACAGTTGCCAGTCACTCCAGCACTGCCACCAGACTCCGGGTCACCATG
TTTGGCCAATGCCTGTTCAGGGTACGCTGGGCCGCCCGAGCGGGCCGGTG
CGACGGCAGCCATACAAGAATCAAAACAGATACAACATCCATGAGCGTCC
AGGAGGTGATTGGCCACATCAATCGAGGACTGGAGACCAGGGGCCGCCCT
GTACGTTTCGCCTTGAGACGCACAAATTGCAACTCCTGGCTGGAGGTTGC
ACAGTTGCCAGTCACTCCAGCACTGCCACCAGACTCCGGGTCACCATGTT
TGGCCAATGCCTGTTCAGGGTACGCTGGGCCGCCCGAGCGGGCCGGTGCG
ACGGCAGCCATACAAGAATCAAAACAGATACAACATCCATGA
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