mRNA_S-ischiensis_contig102.1735.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig102.1735.1
Unique NamemRNA_S-ischiensis_contig102.1735.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig102.1735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig102contigS-ischiensis_contig102:50620..51312 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size310
Cds size279
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig102.1735.1prot_S-ischiensis_contig102.1735.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig102 50649..51310 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815551.7003517-UTR-S-ischiensis_contig102:50619..506481622815551.7003517-UTR-S-ischiensis_contig102:50619..50648Schizocladia ischiensis KU_0333UTRS-ischiensis_contig102 50620..50648 -
1695739764.7593777-UTR-S-ischiensis_contig102:50619..506481695739764.7593777-UTR-S-ischiensis_contig102:50619..50648Schizocladia ischiensis KU_0333UTRS-ischiensis_contig102 50620..50648 -
1622815551.739729-UTR-S-ischiensis_contig102:51310..513121622815551.739729-UTR-S-ischiensis_contig102:51310..51312Schizocladia ischiensis KU_0333UTRS-ischiensis_contig102 51311..51312 -
1695739764.7972846-UTR-S-ischiensis_contig102:51310..513121695739764.7972846-UTR-S-ischiensis_contig102:51310..51312Schizocladia ischiensis KU_0333UTRS-ischiensis_contig102 51311..51312 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815551.7155752-CDS-S-ischiensis_contig102:50648..508041622815551.7155752-CDS-S-ischiensis_contig102:50648..50804Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 50649..50804 -
1695739764.7681384-CDS-S-ischiensis_contig102:50648..508041695739764.7681384-CDS-S-ischiensis_contig102:50648..50804Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 50649..50804 -
1622815551.7260246-CDS-S-ischiensis_contig102:51187..513101622815551.7260246-CDS-S-ischiensis_contig102:51187..51310Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 51188..51310 -
1695739764.7780259-CDS-S-ischiensis_contig102:51187..513101695739764.7780259-CDS-S-ischiensis_contig102:51187..51310Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 51188..51310 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig102.1735.1

>prot_S-ischiensis_contig102.1735.1 ID=prot_S-ischiensis_contig102.1735.1|Name=mRNA_S-ischiensis_contig102.1735.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=93bp
MIGAAVRAAVGGRGAAAAGATKTVTTTGHVMANGGTRQGMSVTERGRKTN
RPERERKRELADTWFGRPPEDNNHPTVTTLFGLIETGSGGDH*
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mRNA from alignment at S-ischiensis_contig102:50620..51312-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig102.1735.1 ID=mRNA_S-ischiensis_contig102.1735.1|Name=mRNA_S-ischiensis_contig102.1735.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=693bp|location=Sequence derived from alignment at S-ischiensis_contig102:50620..51312- (Schizocladia ischiensis KU_0333)
GGATGATCGGCGCGGCGGTGAGGGCAGCCGTGGGGGGAAGGGGCGCGGCG
GCGGCGGGCGCAACGAAGACGGTGACAACAACCGGGCACGTCATGGCGAA
CGGAGGGACTCGTCAGGGCATGTCGGTGAGTGATTTGCTGCAGTGTGCTC
GTGACTTTGGCGCAAGCCTTAGTGCTTCGAAGTAGCATATCTATGCACTG
GGTGTGCTCTTGCAGCGTGGTCCCACGACCACCACATCGTCAAGACGATC
GCTCCGGTTCTGGACCATGACGACGACTCAGGAGGCCCAGTGCACATCGC
CAGACTTGCCCATCTACGTGCCACACTGAGTGCTTCCCCACACAAAGGGA
CAAATGAGGACCCGGCTTGACCATTTTTTTCATGGCTGCTCGCAATGCGG
TTGGGGTGCGCAAGCATTTGGACGACCTCTCTGACCTCTCCCCCCGCCCC
GGGCGGCATCTTCCGTGTGAACCCCCCCCCCCCCCACGCGCACCCCCACT
GCACGCAGGTGACGGAGAGGGGGAGGAAAACTAATAGACCAGAGAGAGAG
AGAAAGAGAGAGCTCGCAGACACATGGTTCGGACGGCCTCCAGAGGACAA
CAACCATCCCACCGTGACGACCCTGTTCGGCCTCATCGAAACGGGCTCCG
GCGGGGACCACTAGCTCACTCCCCGGCTGGGCGGCCGCCGTCT
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Coding sequence (CDS) from alignment at S-ischiensis_contig102:50620..51312-

>mRNA_S-ischiensis_contig102.1735.1 ID=mRNA_S-ischiensis_contig102.1735.1|Name=mRNA_S-ischiensis_contig102.1735.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=558bp|location=Sequence derived from alignment at S-ischiensis_contig102:50620..51312- (Schizocladia ischiensis KU_0333)
ATGATCGGCGCGGCGGTGAGGGCAGCCGTGGGGGGAAGGGGCGCGGCGGC
GGCGGGCGCAACGAAGACGGTGACAACAACCGGGCACGTCATGGCGAACG
GAGGGACTCGTCAGGGCATGTCGATGATCGGCGCGGCGGTGAGGGCAGCC
GTGGGGGGAAGGGGCGCGGCGGCGGCGGGCGCAACGAAGACGGTGACAAC
AACCGGGCACGTCATGGCGAACGGAGGGACTCGTCAGGGCATGTCGGTGA
CGGAGAGGGGGAGGAAAACTAATAGACCAGAGAGAGAGAGAAAGAGAGAG
CTCGCAGACACATGGTTCGGACGGCCTCCAGAGGACAACAACCATCCCAC
CGTGACGACCCTGTTCGGCCTCATCGAAACGGGCTCCGGCGGGGACCACT
AGGTGACGGAGAGGGGGAGGAAAACTAATAGACCAGAGAGAGAGAGAAAG
AGAGAGCTCGCAGACACATGGTTCGGACGGCCTCCAGAGGACAACAACCA
TCCCACCGTGACGACCCTGTTCGGCCTCATCGAAACGGGCTCCGGCGGGG
ACCACTAG
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