mRNA_S-ischiensis_contig102.1734.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig102.1734.1
Unique NamemRNA_S-ischiensis_contig102.1734.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig102.1734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig102contigS-ischiensis_contig102:46855..47311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size458
Cds size429
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815552.3782258-UTR-S-ischiensis_contig102:46854..468821622815552.3782258-UTR-S-ischiensis_contig102:46854..46882Schizocladia ischiensis KU_0333UTRS-ischiensis_contig102 46855..46882 +
1695739765.1358278-UTR-S-ischiensis_contig102:46854..468821695739765.1358278-UTR-S-ischiensis_contig102:46854..46882Schizocladia ischiensis KU_0333UTRS-ischiensis_contig102 46855..46882 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815552.392205-CDS-S-ischiensis_contig102:46882..473111622815552.392205-CDS-S-ischiensis_contig102:46882..47311Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 46883..47311 +
1695739765.144636-CDS-S-ischiensis_contig102:46882..473111695739765.144636-CDS-S-ischiensis_contig102:46882..47311Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 46883..47311 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig102.1734.1prot_S-ischiensis_contig102.1734.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig102 46883..47311 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig102.1734.1

>prot_S-ischiensis_contig102.1734.1 ID=prot_S-ischiensis_contig102.1734.1|Name=mRNA_S-ischiensis_contig102.1734.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=143bp
MGGQAVLGPSNLERWRGTRGRALQYLCFTTVSRRWHCKITFAGTAKWAVA
INGAAASGPSRHQATRGSIFWQQDKYKREGKRRCSYLRRFRAPSPGSPSF
HPPSLAGHTKQTNKEDKGGRERQFFFLSFSFAAAFCCPSPEAV
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mRNA from alignment at S-ischiensis_contig102:46855..47311+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig102.1734.1 ID=mRNA_S-ischiensis_contig102.1734.1|Name=mRNA_S-ischiensis_contig102.1734.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=457bp|location=Sequence derived from alignment at S-ischiensis_contig102:46855..47311+ (Schizocladia ischiensis KU_0333)
GGGGAGGGGAGAGCCTGGTGTAAAAAGAATGGGCGGGCAGGCAGTGTTGG
GGCCCAGTAACCTTGAACGGTGGCGGGGAACGCGGGGTAGAGCTCTACAG
TACTTGTGCTTTACTACTGTATCGCGGCGGTGGCACTGTAAGATCACCTT
TGCCGGGACGGCAAAATGGGCCGTGGCAATCAACGGGGCGGCTGCCAGTG
GTCCATCCCGCCACCAGGCGACTCGTGGCAGTATTTTTTGGCAACAAGAT
AAATATAAGCGAGAGGGAAAGAGGAGGTGTTCCTACTTACGCAGGTTCAG
GGCCCCATCCCCGGGAAGCCCTTCCTTTCACCCGCCCTCGCTCGCAGGGC
ATACAAAGCAGACAAACAAAGAAGACAAAGGAGGAAGGGAGCGGCAGTTT
TTTTTTCTTTCTTTCAGTTTCGCGGCTGCATTCTGCTGTCCGAGTCCTGA
GGCTGTT
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Coding sequence (CDS) from alignment at S-ischiensis_contig102:46855..47311+

>mRNA_S-ischiensis_contig102.1734.1 ID=mRNA_S-ischiensis_contig102.1734.1|Name=mRNA_S-ischiensis_contig102.1734.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=858bp|location=Sequence derived from alignment at S-ischiensis_contig102:46855..47311+ (Schizocladia ischiensis KU_0333)
ATGGGCGGGCAGGCAGTGTTGGGGCCCAGTAACCTTGAACGGTGGCGGGG
AACGCGGGGTAGAGCTCTACAGTACTTGTGCTTTACTACTGTATCGCGGC
GGTGGCACTGTAAGATCACCTTTGCCGGGACGGCAAAATGGGCCGTGGCA
ATCAACGGGGCGGCTGCCAGTGGTCCATCCCGCCACCAGGCGACTCGTGG
CAGTATTTTTTGGCAACAAGATAAATATAAGCGAGAGGGAAAGAGGAGGT
GTTCCTACTTACGCAGGTTCAGGGCCCCATCCCCGGGAAGCCCTTCCTTT
CACCCGCCCTCGCTCGCAGGGCATACAAAGCAGACAAACAAAGAAGACAA
AGGAGGAAGGGAGCGGCAGTTTTTTTTTCTTTCTTTCAGTTTCGCGGCTG
CATTCTGCTGTCCGAGTCCTGAGGCTGTTATGGGCGGGCAGGCAGTGTTG
GGGCCCAGTAACCTTGAACGGTGGCGGGGAACGCGGGGTAGAGCTCTACA
GTACTTGTGCTTTACTACTGTATCGCGGCGGTGGCACTGTAAGATCACCT
TTGCCGGGACGGCAAAATGGGCCGTGGCAATCAACGGGGCGGCTGCCAGT
GGTCCATCCCGCCACCAGGCGACTCGTGGCAGTATTTTTTGGCAACAAGA
TAAATATAAGCGAGAGGGAAAGAGGAGGTGTTCCTACTTACGCAGGTTCA
GGGCCCCATCCCCGGGAAGCCCTTCCTTTCACCCGCCCTCGCTCGCAGGG
CATACAAAGCAGACAAACAAAGAAGACAAAGGAGGAAGGGAGCGGCAGTT
TTTTTTTCTTTCTTTCAGTTTCGCGGCTGCATTCTGCTGTCCGAGTCCTG
AGGCTGTT
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