mRNA_S-ischiensis_contig101.1723.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig101.1723.1
Unique NamemRNA_S-ischiensis_contig101.1723.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig101.1723.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig101contigS-ischiensis_contig101:279845..281640 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size625
Cds size624
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig101.1723.1prot_S-ischiensis_contig101.1723.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig101 279845..281640 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815548.509822-CDS-S-ischiensis_contig101:279844..2802221622815548.509822-CDS-S-ischiensis_contig101:279844..280222Schizocladia ischiensis KU_0333CDSS-ischiensis_contig101 279845..280222 +
1695739762.7825978-CDS-S-ischiensis_contig101:279844..2802221695739762.7825978-CDS-S-ischiensis_contig101:279844..280222Schizocladia ischiensis KU_0333CDSS-ischiensis_contig101 279845..280222 +
1622815548.5242023-CDS-S-ischiensis_contig101:280927..2810401622815548.5242023-CDS-S-ischiensis_contig101:280927..281040Schizocladia ischiensis KU_0333CDSS-ischiensis_contig101 280928..281040 +
1695739762.793581-CDS-S-ischiensis_contig101:280927..2810401695739762.793581-CDS-S-ischiensis_contig101:280927..281040Schizocladia ischiensis KU_0333CDSS-ischiensis_contig101 280928..281040 +
1622815548.5366807-CDS-S-ischiensis_contig101:281507..2816401622815548.5366807-CDS-S-ischiensis_contig101:281507..281640Schizocladia ischiensis KU_0333CDSS-ischiensis_contig101 281508..281640 +
1695739762.8088253-CDS-S-ischiensis_contig101:281507..2816401695739762.8088253-CDS-S-ischiensis_contig101:281507..281640Schizocladia ischiensis KU_0333CDSS-ischiensis_contig101 281508..281640 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig101.1723.1

>prot_S-ischiensis_contig101.1723.1 ID=prot_S-ischiensis_contig101.1723.1|Name=mRNA_S-ischiensis_contig101.1723.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=208bp
VSYGAAINACAKAGEWEAALSLLEEMEEEGVAPNPTVFNAALSACAKAGQ
WRRGLRLMKEMRGAGVSPDHITFGTAMDACGRAGEWRHTLLLLGQMPAAG
VARTVMSFNMAMDVCIKASGPSCDEEVWRHALAIFDEIRAVDPEEGVIQP
NEFSFGMALAACSRGGLWRRALSLLDEMWAAGLPPNRICFNRAIDACAKG
GQWEKALE
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mRNA from alignment at S-ischiensis_contig101:279845..281640+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig101.1723.1 ID=mRNA_S-ischiensis_contig101.1723.1|Name=mRNA_S-ischiensis_contig101.1723.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1796bp|location=Sequence derived from alignment at S-ischiensis_contig101:279845..281640+ (Schizocladia ischiensis KU_0333)
GTGAGCTACGGCGCAGCGATCAACGCCTGCGCCAAGGCGGGCGAGTGGGA
GGCCGCCCTCTCCCTGTTGGAGGAGATGGAAGAAGAGGGGGTGGCGCCCA
ACCCCACCGTCTTTAATGCGGCGCTCTCCGCCTGCGCCAAGGCCGGGCAG
TGGCGGCGCGGGCTCCGCCTGATGAAGGAGATGCGGGGTGCGGGGGTTTC
GCCCGATCACATCACGTTCGGGACGGCCATGGACGCATGCGGAAGGGCCG
GGGAGTGGAGGCACACCCTGCTCCTGCTGGGGCAGATGCCGGCGGCGGGG
GTGGCGCGCACCGTCATGAGCTTCAACATGGCCATGGACGTGTGCATCAA
GGCCTCGGGCCCCAGCTGCGACGAGGAGGTCTGGCATACTTGGCATAACA
GTACAATTGGCCCAAATAGTTTTATCGACGTCGAAAATTGTGATGAACTT
CAACACGGCCATGGACGCCTGCATCAAGGCCTGGGGCCCCGGCGAAGGCG
AGGAGGTCTGGCTAACCATGGCACAAAAATAGGTTTCTTTTTTGATTTTT
TTTTTTTCAGATAGTTTTTTTTCGAATTGTGTTTTGACATGCGAGTTCCG
GGCCCCGTCATATCGATATCGAAAAAAAATCGCCCAAATTGCCATCGAAC
ACCAGCCCACATATCGAAATACTTTGAAGTACATACCGAAATATGAACTT
CAACACCGCCATGGAAGCCTGCATCAAGGCCTCGGGCCGCGGCGACGACG
AGGAGGTCCGGCTATTGTAACCATGGCACAAAAACAGTGCGATAAAGATG
AACACCTGATTCGGAAAGAAGAGTTTTGCGATATCGAAAATTTTCGCCCA
GACTGCCATCCAACACCGGCCCAAGTATCGACAAGAGTACCGGAATATCG
ATGCCGAGCCGCGGGGTTTCCACACCTTGATACGGCGTTTTGGCATCGAA
GGCTAAAAAAAATACGAGGAAGTGTAAACCTTGCCCAAATATCGATGCTT
ACGAAGTATATTTAATGATTTGCTCGACTTGTGGCCCCAAACTGCCATTT
GTTTTTTGACTTTGCACTTTTGTGCATGGTTAGGTCTGGCGGCACGCCCT
GGCCATCTTCGACGAGATCCGTGCGGTCGATCCGGAGGAGGGCGTCATAC
AGCCCAACGAGTTCAGCTTCGGCATGGCCTTGGCGGCGTGCTCCAGGTAA
TTTTACCCGAAGAATGTCAATTTGCTCGACTTGTGGGCCCAAATTGCCAT
TTTTTTTAAAAGAAAGCTAAACCCGGAGGAGGGCGTCATCATGCCCAGCG
AGTTCAGCTTCGGCATGGCCTTGGTGGCGTGCTCCAGGTAACCATGTTAC
AAACATGCGATCTGTTTTGCCCAAATAGTTTTTTGCAATATTGAAAATTT
TCGCCCAAATTGCGATCGCGCACCAGCCCAAATATCGGGGGAAGAAAATA
CCGAAATATCGATGCCGAGCCGCAGGGTTCATGGGGTTTCCACACCTTGA
TACGGCATTTCGGCATCGGAGGCCCAAAAACTCGCCCAATCATTAATATT
CTCCCAAAAATATCTACCTGTTCGCTCGACTTTCGGCCCCAAATTGCCAT
TTTTTAAAAAACGATTGCCAGTTTTTTACACCTCGCACTTGTGTACCATG
GTTTTGACTCCAGGGGGGGGCTGTGGCGGCGGGCCTTGTCCCTGCTGGAC
GAGATGTGGGCCGCGGGCCTGCCGCCCAACCGCATCTGCTTCAACCGGGC
CATCGACGCCTGCGCCAAGGGGGGGCAGTGGGAGAAAGCGCTGGAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig101:279845..281640+

>mRNA_S-ischiensis_contig101.1723.1 ID=mRNA_S-ischiensis_contig101.1723.1|Name=mRNA_S-ischiensis_contig101.1723.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1248bp|location=Sequence derived from alignment at S-ischiensis_contig101:279845..281640+ (Schizocladia ischiensis KU_0333)
GTGAGCTACGGCGCAGCGATCAACGCCTGCGCCAAGGCGGGCGAGTGGGA
GGCCGCCCTCTCCCTGTTGGAGGAGATGGAAGAAGAGGGGGTGGCGCCCA
ACCCCACCGTCTTTAATGCGGCGCTCTCCGCCTGCGCCAAGGCCGGGCAG
TGGCGGCGCGGGCTCCGCCTGATGAAGGAGATGCGGGGTGCGGGGGTTTC
GCCCGATCACATCACGTTCGGGACGGCCATGGACGCATGCGGAAGGGCCG
GGGAGTGGAGGCACACCCTGCTCCTGCTGGGGCAGATGCCGGCGGCGGGG
GTGGCGCGCACCGTCATGAGCTTCAACATGGCCATGGACGTGTGCATCAA
GGCCTCGGGCCCCAGCTGCGACGAGGAGGTGAGCTACGGCGCAGCGATCA
ACGCCTGCGCCAAGGCGGGCGAGTGGGAGGCCGCCCTCTCCCTGTTGGAG
GAGATGGAAGAAGAGGGGGTGGCGCCCAACCCCACCGTCTTTAATGCGGC
GCTCTCCGCCTGCGCCAAGGCCGGGCAGTGGCGGCGCGGGCTCCGCCTGA
TGAAGGAGATGCGGGGTGCGGGGGTTTCGCCCGATCACATCACGTTCGGG
ACGGCCATGGACGCATGCGGAAGGGCCGGGGAGTGGAGGCACACCCTGCT
CCTGCTGGGGCAGATGCCGGCGGCGGGGGTGGCGCGCACCGTCATGAGCT
TCAACATGGCCATGGACGTGTGCATCAAGGCCTCGGGCCCCAGCTGCGAC
GAGGAGGTCTGGCGGCACGCCCTGGCCATCTTCGACGAGATCCGTGCGGT
CGATCCGGAGGAGGGCGTCATACAGCCCAACGAGTTCAGCTTCGGCATGG
CCTTGGCGGCGTGCTCCAGGTCTGGCGGCACGCCCTGGCCATCTTCGACG
AGATCCGTGCGGTCGATCCGGAGGAGGGCGTCATACAGCCCAACGAGTTC
AGCTTCGGCATGGCCTTGGCGGCGTGCTCCAGGGGGGGGCTGTGGCGGCG
GGCCTTGTCCCTGCTGGACGAGATGTGGGCCGCGGGCCTGCCGCCCAACC
GCATCTGCTTCAACCGGGCCATCGACGCCTGCGCCAAGGGGGGGCAGTGG
GAGAAAGCGCTGGAGGGGGGGGCTGTGGCGGCGGGCCTTGTCCCTGCTGG
ACGAGATGTGGGCCGCGGGCCTGCCGCCCAACCGCATCTGCTTCAACCGG
GCCATCGACGCCTGCGCCAAGGGGGGGCAGTGGGAGAAAGCGCTGGAG
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