mRNA_S-ischiensis_contig101.1720.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig101.1720.1
Unique NamemRNA_S-ischiensis_contig101.1720.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig101.1720.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig101contigS-ischiensis_contig101:265955..270919 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue6.8e-08
Seed eggNOG ortholog65071.PYU1_T010333
Preferred nameVTI1A
KEGG koko:K08493,ko:K08494,ko:K10406,ko:K18749
KEGG Pathwayko04130,ko04138,map04130,map04138
GOsGO:0000139,GO:0000149,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0000331,GO:0002576,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005767,GO:0005768,GO:0005769,GO:0005770,GO:0005773,GO:0005774,GO:0005776,GO:0005783,GO:0005789,GO:0005794,GO:0005798,GO:0005802,GO:0005829,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0006887,GO:0006888,GO:0006891,GO:0006892,GO:0006896,GO:0006904,GO:0006906,GO:0006914,GO:0006996,GO:0007030,GO:0007033,GO:0007034,GO:0008021,GO:0008104,GO:0008150,GO:0008152,GO:0008200,GO:0008283,GO:0009056,GO:0009987,GO:0010008,GO:0010256,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016247,GO:0016248,GO:0016482,GO:0017081,GO:0019869,GO:0022406,GO:0030133,GO:0030134,GO:0030135,GO:0030136,GO:0030139,GO:0030141,GO:0030173,GO:0030424,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0031090,GO:0031091,GO:0031093,GO:0031201,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031410,GO:0031901,GO:0031902,GO:0031974,GO:0031982,GO:0031983,GO:0031984,GO:0032010,GO:0032501,GO:0032588,GO:0032879,GO:0032880,GO:0032940,GO:0032991,GO:0033036,GO:0033267,GO:0033365,GO:0034613,GO:0034774,GO:0036477,GO:0042144,GO:0042147,GO:0042175,GO:0042886,GO:0042995,GO:0043005,GO:0043025,GO:0043195,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043679,GO:0044237,GO:0044248,GO:0044297,GO:0044306,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0045055,GO:0045184,GO:0045202,GO:0045324,GO:0045335,GO:0046903,GO:0046907,GO:0048193,GO:0048278,GO:0048280,GO:0048284,GO:0048471,GO:0050789,GO:0050879,GO:0050881,GO:0050882,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051649,GO:0055037,GO:0055038,GO:0060205,GO:0060341,GO:0061024,GO:0061025,GO:0061919,GO:0065007,GO:0065009,GO:0070013,GO:0070382,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0072665,GO:0072666,GO:0090161,GO:0090174,GO:0097458,GO:0097576,GO:0097708,GO:0098588,GO:0098772,GO:0098791,GO:0098793,GO:0098796,GO:0098805,GO:0098827,GO:0098852,GO:0099106,GO:0099503,GO:0120025,GO:0120038,GO:0140029,GO:0140056,GO:0150034,GO:1903076,GO:1903827,GO:1904375,GO:1905475
EggNOG free text desc.Source PGD
EggNOG OGs1MAG4@121069,KOG1666@1,KOG1666@2759
COG Functional cat.U
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04131,ko04812
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-22_000410.1
Exons4
Model size621
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig101.1720.1prot_S-ischiensis_contig101.1720.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig101 266004..270674 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815550.9684017-UTR-S-ischiensis_contig101:265954..2660031622815550.9684017-UTR-S-ischiensis_contig101:265954..266003Schizocladia ischiensis KU_0333UTRS-ischiensis_contig101 265955..266003 +
1695739764.2133455-UTR-S-ischiensis_contig101:265954..2660031695739764.2133455-UTR-S-ischiensis_contig101:265954..266003Schizocladia ischiensis KU_0333UTRS-ischiensis_contig101 265955..266003 +
1622815551.030537-UTR-S-ischiensis_contig101:270674..2709191622815551.030537-UTR-S-ischiensis_contig101:270674..270919Schizocladia ischiensis KU_0333UTRS-ischiensis_contig101 270675..270919 +
1695739764.2710865-UTR-S-ischiensis_contig101:270674..2709191695739764.2710865-UTR-S-ischiensis_contig101:270674..270919Schizocladia ischiensis KU_0333UTRS-ischiensis_contig101 270675..270919 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815550.981611-CDS-S-ischiensis_contig101:266003..2660111622815550.981611-CDS-S-ischiensis_contig101:266003..266011Schizocladia ischiensis KU_0333CDSS-ischiensis_contig101 266004..266011 +
1695739764.228304-CDS-S-ischiensis_contig101:266003..2660111695739764.228304-CDS-S-ischiensis_contig101:266003..266011Schizocladia ischiensis KU_0333CDSS-ischiensis_contig101 266004..266011 +
1622815550.9958067-CDS-S-ischiensis_contig101:266390..2664541622815550.9958067-CDS-S-ischiensis_contig101:266390..266454Schizocladia ischiensis KU_0333CDSS-ischiensis_contig101 266391..266454 +
1695739764.24045-CDS-S-ischiensis_contig101:266390..2664541695739764.24045-CDS-S-ischiensis_contig101:266390..266454Schizocladia ischiensis KU_0333CDSS-ischiensis_contig101 266391..266454 +
1622815551.0075665-CDS-S-ischiensis_contig101:268554..2686411622815551.0075665-CDS-S-ischiensis_contig101:268554..268641Schizocladia ischiensis KU_0333CDSS-ischiensis_contig101 268555..268641 +
1695739764.251689-CDS-S-ischiensis_contig101:268554..2686411695739764.251689-CDS-S-ischiensis_contig101:268554..268641Schizocladia ischiensis KU_0333CDSS-ischiensis_contig101 268555..268641 +
1622815551.017383-CDS-S-ischiensis_contig101:270506..2706741622815551.017383-CDS-S-ischiensis_contig101:270506..270674Schizocladia ischiensis KU_0333CDSS-ischiensis_contig101 270507..270674 +
1695739764.2622-CDS-S-ischiensis_contig101:270506..2706741695739764.2622-CDS-S-ischiensis_contig101:270506..270674Schizocladia ischiensis KU_0333CDSS-ischiensis_contig101 270507..270674 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig101.1720.1

>prot_S-ischiensis_contig101.1720.1 ID=prot_S-ischiensis_contig101.1720.1|Name=mRNA_S-ischiensis_contig101.1720.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=109bp
MYGTTGSTEPVAREGQRLLVDSMQVTEETRDIAGDVLGRLAEQRSALETS
HQRVGGMRDMTESARRTLKEMRQRAFWERVGLYTTIVVLVVLIALVSYRE
ITNSGKLF*
back to top

mRNA from alignment at S-ischiensis_contig101:265955..270919+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig101.1720.1 ID=mRNA_S-ischiensis_contig101.1720.1|Name=mRNA_S-ischiensis_contig101.1720.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4965bp|location=Sequence derived from alignment at S-ischiensis_contig101:265955..270919+ (Schizocladia ischiensis KU_0333)
CGGTAACCTCACGAGAAGGCGCGGTGCCAACGCCGGACCGGCCGCCAAGA
TGTACGGGTGAGCGAACATGAATAGACATGAGCGGCTGAACGCTTGCCAA
GGCACACTTTTGCTCTTTCAACGCTGTGCATCTTGAAAGTGCCGGTCCAG
CATGTGGTTCGGTTGGGCCCGGGAATTTGCCCCAAGCTTAACTTTTAGAG
CGCGAGAGGGTTTTTTGTGGTTCGGGATGAGTGTGTTACGGCACCGTCAA
GGTTGGGCGATCCCTAGAATCTGATGGCATGTGCTCCATCAATAATTTGA
AAGGAGTCACCAGATGAGTAGACGAAAATAGTGTACTACAGTAGTAGTAC
CCAGAACAACGGCAGCAGATGCAGCACCATCAACGTCAGCAACACGGATT
ATCCCACTCATGAGGCCTGGCCGATCCGTCTAACAGGACAACTGGAAGCA
CGGAGCCGGTTGCACGGGAGGGCCAAAGGCTTCTGGTGGACAGCATGCAG
GTGAATTGGTGTTTGTGTGTGTGTCAGTGATGGAATACCATCAGTACGAG
TAGATAGTTATCGGGCTCGGCTGATTTTGTGGGTGGCGTTACAAACTACT
TGGATTTAGTGTGGGTCAAACTGCTTGTTGAATATCGACCATCGATAGAT
ATATAACTCGCAGCTTATCTACCACTCCAAATAGATCAGTACTGTCGATA
GAAAAGGTTGATTTGCTTAGATATTCCGTCCCTGGTGTGTGTGTGTGTGT
GTGTTCGTGCATGCTGACGTGTGTGAAAATTGTATGTGCAGTGTGTGTTT
GCAGTATGTATGCTGTGTGCATCTGTGCCTGCGAGTGTTGTGTCCTCTCC
CTCTCCCCCCGCCCCACCCTTCCGCCCCCCTCTCCCTCTCCCTGCGCCAC
TTTATCTCTCTGTGCCTGATGGTGCAGGCGTTGCAGATTGCACCGTACAT
GTGTCCAAAGGGTCCAGCACCCACAGCACTCTTTACCCCTCCCTCCTCAT
TACCGCCAATTTTGAAGTCTGGCACGCTTTTCTTGTTCCGGGGCACGAGA
ATGTTCCGGAACTTGCTCACACCTGGTTTTCTTTCCTTCCCGAAGAGCAA
GAGGATTGGTACACATCTGCCAGCACACTCCTCTGCCCCCCAACACGCTA
CAGTTTCATTCACCATTCGTCGTCAGTTTTTCAGAATCGCGCCCGGCTGC
AAATTTGCCGTAGAGCTGCACATGCCTTGGTTTCCCATCTGCTTGCCTTG
CCTCCCTGATGTGATGTGATGTGATGTGATTTGATGCGATGTGGTGTGAT
GACATGTCCAAATTGATGGTACGAATAATGGGCTGCAGATTGCAAATCAC
ATCACATCATATCACATCACATCACAGCACATCGCGCTACCTGATGCGAT
GCGATGTGATGACATGACAACATTGATACTTCCGGGAGTAGTACGAATAG
TGGACTGCAGATTGAACATCACATCAGATCACATCGCACAAACACTAATG
AGAGCAAATCACGTCACAGCACATGCACATCCGGTAAGATACCTGATGCG
ATGGGATGTGGTGCTATGAGATGCCAAGCTACCTGCCTTTCGGAGTGCCT
CTCACGTCACATCACATCACACGAACATTGCATAGAGCGCATCAAACCAC
ATCGTACTACCTGAAGGCGATGTGATGCCCTGTCAAACTGCAGTACTGTG
CAGAACCGTTGTGAAATGGCTGCTTCAATCGACCTACGGACTGATCCGAT
TTGTGGTGCTTGCTCGATCATTTCTTGGATGGCCGATTCGATTTTTTTCT
GTTAGCCGGTTCTTCCTCGTTTTATTGCCGGTAGTGGCTGCCGCGGCCGG
GTTAAGGCTATGTAGCGCACCGGCACTGAGGGAGACGTATCGCATCACAC
TGCATCACATCACATCTCATCACATCACAGAACTGTACCTGACGCGATGT
GACGTGATGCGATGCCATGTGAAACTATTGGATTCCGGCGTGCACGTCAC
ATCACATCACATCACAGTACTCTACTGGACCTGACGCGATGTGATGTGAT
GCGATGCCATGTCCAACTATTGTACTTGGCAGTATTACGGAGTGCACATC
ACATCACAGCGTAGTAGGGCTGCGTGGCCAATGGCCGCAAGGCTACCCCG
TATTGGGACCGACCAGGGCCAGCACGGAGTATACTGGCCCGAGTCGGTGG
CAAGCACAGGGTGGGATCCCCATCCGCCATGAGTACACATGTCACATCAC
ATCACAGTACGCATGCGATTTGATGCGATGCCATGGATTTCGGAGTGCAC
ATAACATCACATCACATCACCTCACAGTACTGTACCTGACGCGATGCGAT
GTGATGCGATGCCATGTCAAACTAATGGATTTCGGAGTGCAAATCACATC
GTGCTCCGTCCCGGCCTAACTGGGACGCGAGAGTCCATGGCTAGATAGCT
ACTCCTCTCCGAGGGCAAACCCGAAGTTTTGAATTGGGGCTGTGGGCGTT
GCATGCAAGATTATGTCGCAAGACAAAAGCCAATGAGTACATACATCACA
TCACGTCACATCACATCACATGACACAGTGCCCTCCTCCTCCTCCTCCAG
GTGACGGAAGAGACGCGGGACATAGCGGGGGATGTATTGGGCCGCCTGGC
GGAGCAACGCTCTGCCCTAGAGACATCGCACCAGAGGGTGAGTCAGGCCT
CTTATTAATACCAACATAATACTGTGCTTTACTGCAGTAGTAGTAGTAGT
AGTTGCAGCGGTACTGTAGTGTATACTTCGAAGTATATATTCTGCCCTAG
AGACATCGCACCGGAGGGTGTCAAGCCTCTTGGGTACCGTACGTGCGCCG
TCAGAAATAGTGCTACTTGTACTCGTACAATACTGTTAGTACTGTGTTTA
GTGCAGCACTTCCAGAAGTAGTACAGTAGTGGCAGCACCAGCACCAGCAG
CACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGTAGTGTGTTCT
CATGGGTGGTGTGCAGCAAGGTGTAGTAGCTGTTGTAGTAGATATATTCT
GCCCTAGGGACATCGCACCAGAGGGTGAGTCAAGCATCTTGGGTACAGTA
CGTGCACCTTCAGAAATTGTGCTACTTTGCATACTGTGCTTTAGTGCAGT
ACCTCCGGAACTAGTAGTAGCAGCAGTGGGTGTACTCGTAATAGTACAGT
ACTACCAGGAACAACACAGGGCGAGGTGCTGGCCACGTCACTGAAGACCT
CAACAGTGGCCCTTCCTTATAGCTCGCCAGGGGAGGGGGTTGTGTGCGGG
GAAGGGGGAGGGGTTGGCAAAGGAAGGGGGAGGAAGAGAGGGGGGGGGGG
ATTTGCCCCCAGGGGGGTGTGGGGGGCTGAGTGGCAGGCGACGAGGCGGC
GTAGGCAGTGACAGAGTAGGCAGAATCACCACGTCGCGTACTGCAATAGG
CCCACATCATTGTAGGCCCTCCGGAGGTCAGTGATGGAAGATCTACGCAA
ATCAACATGTTTATCAACTTCTAAGTACAGTACTGATCTACTCGTACTAC
GGTAGTATATATCTATCGATGCTGATATTCGATAGTTTGACCCACACTAA
ATCCAAGTAGTTGGTAGCGCCACCCACAAAACTAGCCGAGCCCGATAACT
ATGTACTAGCCGATATTCCACCACTGGTGTGCGTGCCTGCAGGTGGGGGG
CATGCGCGACATGAGCACCCTCCCTCCCTTACATGTACCCTCTCTATATC
TCGCAGCACTCACTCTCTCCCTCCCCGCCCCCCTCTCACCCCTTGTCCCC
CTCTCCTTCTCCCTCTCCCTCCCTTCCTGTCTGTGCATGTGCCGCCCCTT
GTCCCCCTCTTTGTCTCCCTCTCCCTCTCCCTTGCTGTCTCTGCATGTCT
CCGTCTCCCTCTCCCTCTCCCTCCCTGTCTCTGCATGTGTCGCCCCTCGT
CCTCCTCTCCTTCTCTCTCTCCCTCCTCCTCCCTGTCTCTGCATATATAG
CCCCTCACTCCCCTCTCCTTCTCCGTCTCCCTCTCCTTCCTGTCTTTGCA
TGTCTCGCCCCTCACCCCCCTCTCCTTCTCCTTCTCCCACCCCCTCTCCC
TTCCTGTCTCTGCGTGTGTCGCCCCTCGTCCCCCTCTCCTTCTCCCTCTC
CCTCTCCCTCCCCGTCTCTGCATGTGTGTGTTTACGGCAGTGATGGAATA
TCTATGCAAATCAGCCTATCTAAAGTCCTGATCTACTCGTAGTAGTATAT
ATCTACCGATCGTCGATATTCGCTAGTAAGACCCACACTAAGTCCAAGTA
GTGAGTAACGCCACCCACAAAGTCAGTCGAGCCCAATGATTCCCCACTGA
TCGATATTCCATCACTGCTTGTCCCCCTCTCCTTCTCCCTCTCCCTCCCT
GTCTCTGCATGTCTCGCCCCTTGTCCCCCCCCCTCTCTCCCTCTCCCTCT
CCCTCCCTGTCTCTCCCTCCCTCCCCGCCCCCCTCTCGCCCCTCGTCCTC
CTGTCCTTCTCCCTCGCTGTCTCTGCATGTGTGCGTGTGTGCATGTCTGC
AGGTGGGGGGCATGCGGGACATGACGGAGAGTGCGCGAAGGACGCTTAAG
GAGATGCGGCAAAGGGCCTTCTGGGAACGCGTTGGCCTGTACACGACCAT
CGTCGTGCTGGTCGTCTTGATAGCGCTCGTGTCCTACAGGGAGATTACAA
ATAGCGGGAAACTCTTCTGATAACAAGATCATTATTTCTGATAGCGCTCG
TGTCCTGCAGGGAGATGACAATAGCGGGAAACTCTTCTGACCACACTCTG
TCATAATGACAAGATTCACATAGTTTTCTGCAACAAGACAGCATGATGAC
AACTACAGTAGCGGGAAACTCTTCTGAGCGCACCGCACTCTGTATCAACA
AGATGGTTGGTCTTGATAGCGCTCGTGTCCTACAGGGAGATTACAAGTAG
CGGGAAACTCTTCTG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig101:265955..270919+

>mRNA_S-ischiensis_contig101.1720.1 ID=mRNA_S-ischiensis_contig101.1720.1|Name=mRNA_S-ischiensis_contig101.1720.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=654bp|location=Sequence derived from alignment at S-ischiensis_contig101:265955..270919+ (Schizocladia ischiensis KU_0333)
ATGTACGGATGTACGGGACAACTGGAAGCACGGAGCCGGTTGCACGGGAG
GGCCAAAGGCTTCTGGTGGACAGCATGCAGGACAACTGGAAGCACGGAGC
CGGTTGCACGGGAGGGCCAAAGGCTTCTGGTGGACAGCATGCAGGTGACG
GAAGAGACGCGGGACATAGCGGGGGATGTATTGGGCCGCCTGGCGGAGCA
ACGCTCTGCCCTAGAGACATCGCACCAGAGGGTGACGGAAGAGACGCGGG
ACATAGCGGGGGATGTATTGGGCCGCCTGGCGGAGCAACGCTCTGCCCTA
GAGACATCGCACCAGAGGGTGGGGGGCATGCGGGACATGACGGAGAGTGC
GCGAAGGACGCTTAAGGAGATGCGGCAAAGGGCCTTCTGGGAACGCGTTG
GCCTGTACACGACCATCGTCGTGCTGGTCGTCTTGATAGCGCTCGTGTCC
TACAGGGAGATTACAAATAGCGGGAAACTCTTCTGAGTGGGGGGCATGCG
GGACATGACGGAGAGTGCGCGAAGGACGCTTAAGGAGATGCGGCAAAGGG
CCTTCTGGGAACGCGTTGGCCTGTACACGACCATCGTCGTGCTGGTCGTC
TTGATAGCGCTCGTGTCCTACAGGGAGATTACAAATAGCGGGAAACTCTT
CTGA
back to top