mRNA_S-ischiensis_contig101.1713.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig101.1713.1
Unique NamemRNA_S-ischiensis_contig101.1713.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig101.1713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig101contigS-ischiensis_contig101:181839..182297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size459
Cds size459
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815548.9768-CDS-S-ischiensis_contig101:181838..1822971622815548.9768-CDS-S-ischiensis_contig101:181838..182297Schizocladia ischiensis KU_0333CDSS-ischiensis_contig101 181839..182297 +
1695739762.9499376-CDS-S-ischiensis_contig101:181838..1822971695739762.9499376-CDS-S-ischiensis_contig101:181838..182297Schizocladia ischiensis KU_0333CDSS-ischiensis_contig101 181839..182297 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig101.1713.1prot_S-ischiensis_contig101.1713.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig101 181839..182297 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig101.1713.1

>prot_S-ischiensis_contig101.1713.1 ID=prot_S-ischiensis_contig101.1713.1|Name=mRNA_S-ischiensis_contig101.1713.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=153bp
PAARPPPAAAPNSAAARAMAIILLHGMHPQAAAPAALDTFHGGTDGDGAA
AAVATSDGRRHTPAVAFQPALNHAYPRPTTTSFIIGPGFHATAAAAGYPR
PQGVPPGPLPPGLELRAPVPPGSWRGHDGAEMVGASTSPWPGSWVGYRNA
SHD
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mRNA from alignment at S-ischiensis_contig101:181839..182297+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig101.1713.1 ID=mRNA_S-ischiensis_contig101.1713.1|Name=mRNA_S-ischiensis_contig101.1713.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=459bp|location=Sequence derived from alignment at S-ischiensis_contig101:181839..182297+ (Schizocladia ischiensis KU_0333)
CCCGCAGCTCGCCCCCCCCCTGCTGCCGCCCCCAACTCGGCGGCGGCACG
AGCCATGGCAATCATTCTCCTGCACGGGATGCACCCCCAGGCGGCGGCGC
CGGCGGCACTCGACACCTTCCATGGAGGCACGGACGGCGACGGCGCCGCC
GCTGCCGTCGCCACCTCCGACGGCCGCCGCCACACACCAGCCGTGGCGTT
TCAACCGGCGTTGAACCACGCGTACCCCCGCCCCACCACGACGAGCTTCA
TCATCGGGCCGGGATTCCACGCCACGGCGGCGGCAGCGGGGTACCCTCGG
CCCCAGGGTGTGCCTCCGGGCCCGCTCCCCCCGGGCCTGGAGCTCCGTGC
CCCGGTGCCGCCGGGCTCGTGGCGTGGCCACGACGGTGCTGAGATGGTGG
GCGCCTCCACCTCTCCTTGGCCGGGGTCGTGGGTGGGGTATAGAAATGCA
AGTCATGAT
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Coding sequence (CDS) from alignment at S-ischiensis_contig101:181839..182297+

>mRNA_S-ischiensis_contig101.1713.1 ID=mRNA_S-ischiensis_contig101.1713.1|Name=mRNA_S-ischiensis_contig101.1713.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=918bp|location=Sequence derived from alignment at S-ischiensis_contig101:181839..182297+ (Schizocladia ischiensis KU_0333)
CCCGCAGCTCGCCCCCCCCCTGCTGCCGCCCCCAACTCGGCGGCGGCACG
AGCCATGGCAATCATTCTCCTGCACGGGATGCACCCCCAGGCGGCGGCGC
CGGCGGCACTCGACACCTTCCATGGAGGCACGGACGGCGACGGCGCCGCC
GCTGCCGTCGCCACCTCCGACGGCCGCCGCCACACACCAGCCGTGGCGTT
TCAACCGGCGTTGAACCACGCGTACCCCCGCCCCACCACGACGAGCTTCA
TCATCGGGCCGGGATTCCACGCCACGGCGGCGGCAGCGGGGTACCCTCGG
CCCCAGGGTGTGCCTCCGGGCCCGCTCCCCCCGGGCCTGGAGCTCCGTGC
CCCGGTGCCGCCGGGCTCGTGGCGTGGCCACGACGGTGCTGAGATGGTGG
GCGCCTCCACCTCTCCTTGGCCGGGGTCGTGGGTGGGGTATAGAAATGCA
AGTCATGATCCCGCAGCTCGCCCCCCCCCTGCTGCCGCCCCCAACTCGGC
GGCGGCACGAGCCATGGCAATCATTCTCCTGCACGGGATGCACCCCCAGG
CGGCGGCGCCGGCGGCACTCGACACCTTCCATGGAGGCACGGACGGCGAC
GGCGCCGCCGCTGCCGTCGCCACCTCCGACGGCCGCCGCCACACACCAGC
CGTGGCGTTTCAACCGGCGTTGAACCACGCGTACCCCCGCCCCACCACGA
CGAGCTTCATCATCGGGCCGGGATTCCACGCCACGGCGGCGGCAGCGGGG
TACCCTCGGCCCCAGGGTGTGCCTCCGGGCCCGCTCCCCCCGGGCCTGGA
GCTCCGTGCCCCGGTGCCGCCGGGCTCGTGGCGTGGCCACGACGGTGCTG
AGATGGTGGGCGCCTCCACCTCTCCTTGGCCGGGGTCGTGGGTGGGGTAT
AGAAATGCAAGTCATGAT
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